From 1810d987bce8328986bfd091c12f797f346d608f Mon Sep 17 00:00:00 2001
From: skchronicles <kuhnsa3@gmail.com>
Date: Mon, 1 Apr 2024 12:25:52 -0400
Subject: [PATCH] Adding pipeline dependencies

---
 workflow/envs/mpox.yaml | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/workflow/envs/mpox.yaml b/workflow/envs/mpox.yaml
index afeeaa0..f253672 100644
--- a/workflow/envs/mpox.yaml
+++ b/workflow/envs/mpox.yaml
@@ -6,6 +6,8 @@ channels:
   - r
 dependencies:
  - nanofilt=2.8.0
- - nanoplot=1.38.1
- - minimap2=2.24
- - krona=2.8.1
+ - porechop=0.2.4
+ - medaka=1.10.0
+ - veryfasttree=4.0.3
+ - fasttree=2.1.11
+ - mafft=7.475