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Seperate ends#57

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rroutsong wants to merge 18 commits intomainOpenOmics/chrom-seek:mainfrom seperate_endsOpenOmics/chrom-seek:seperate_endsCopy head branch name to clipboard

+1,388-926

Commits

Commits on Dec 10, 2024

• feat: vscode ignore stashes

  rroutsong

  committed
  010d9d1

• fix: seperate paired and single end rules, conditional import

  rroutsong

  committed
  ef9f39c

• Merge branch 'seperate_ends' of http://github.com/OpenOmics/chrom-seek into seperate_ends

  rroutsong

  committed
  01bd7d5

• fix: add back trim-align-dedup ended rules

  rroutsong

  committed
  11bd817

• fix: changeset from testing with blocked toy dataset

  rroutsong

  committed
  c3a12ca

• fix: testing fixes with the 3 toy datasets

  rroutsong

  committed
  9735b6e

• fix: add missing import to single end qc rules

  rroutsong

  committed
  05d7fa0

Commits on Dec 11, 2024

• fix: correct ci dry run failures

  rroutsong

  committed
  e3da83c

• fix: remove file_stems

  rroutsong

  committed
  8ea4e6c

• fix: add conditional when no inputs

  rroutsong

  committed
  ef4a33c

• fix: null output on just paired end

  rroutsong

  committed
  83bb23c

• fix: prettify rule put option arg at end with no line break

  rroutsong

  committed
  b515b64

Commits on Dec 23, 2024

• fix: lint

  rroutsong

  committed
  5d9cd55

• fix: lint

  rroutsong

  committed
  63489b2

Commits on Dec 27, 2024

• fix: correctly route insert size metric files at rule all level

  rroutsong

  committed
  27709bd

• fix: reroute insert size metrics and RPGC bigwigs

  rroutsong

  committed
  4b32239

Commits on Dec 30, 2024

• fix: review suggestions

  rroutsong

  committed
  c8e2b06

• fix: update bam2bw paired end execution

  rroutsong

  committed
  f3bf548