Seperate ends #57
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Seperate ends #57
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…into seperate_ends
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Waiting for test data sets to finish running before review, all data stored at |
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Using the command tree -I 'logfiles|resources|workflow|bin|config|config.json|failed_jobs_*|job_information_*|*.R*.fastq.gz|*.krona.html.files|*.sh|COMPLETED' $DIRONE > $DIRONE.tree
tree -I 'logfiles|resources|workflow|bin|config|config.json|failed_jobs_*|job_information_*|*.R*.fastq.gz|*.krona.html.files|*.sh|COMPLETED' $DIRTWO > $DIRTWO.tree
diff $DIRONE.tree $DIRTWO.treeI identified that some insert size files are missing in the 1c1
< wo_blocking
---
> wo_blocking_PREV
237a238,239
> │ ├── 27_IFN0h_1_Sp100_S15.Q5DD.insert_size_histogram.pdf
> │ ├── 27_IFN0h_1_Sp100_S15.Q5DD.insert_size_metrics.txt
242a245,246
> │ ├── 35_IFN24h_1_Sp100_S6.Q5DD.insert_size_histogram.pdf
> │ ├── 35_IFN24h_1_Sp100_S6.Q5DD.insert_size_metrics.txt
247a252,253
> │ ├── 39_IFN0h_2_Sp100_S46.Q5DD.insert_size_histogram.pdf
> │ ├── 39_IFN0h_2_Sp100_S46.Q5DD.insert_size_metrics.txt
252a259,260
> │ ├── 47_IFN24h_2_Sp100_S43.Q5DD.insert_size_histogram.pdf
> │ ├── 47_IFN24h_2_Sp100_S43.Q5DD.insert_size_metrics.txt
417c425< w_blocking
---
> w_blocking_PREV
245a246,247
> │ ├── 27_IFN0h_1_Sp100_S15.Q5DD.insert_size_histogram.pdf
> │ ├── 27_IFN0h_1_Sp100_S15.Q5DD.insert_size_metrics.txt
250a253,254
> │ ├── 35_IFN24h_1_Sp100_S6.Q5DD.insert_size_histogram.pdf
> │ ├── 35_IFN24h_1_Sp100_S6.Q5DD.insert_size_metrics.txt
255a260,261
> │ ├── 39_IFN0h_2_Sp100_S46.Q5DD.insert_size_histogram.pdf
> │ ├── 39_IFN0h_2_Sp100_S46.Q5DD.insert_size_metrics.txt
260a267,268
> │ ├── 47_IFN24h_2_Sp100_S43.Q5DD.insert_size_histogram.pdf
> │ ├── 47_IFN24h_2_Sp100_S43.Q5DD.insert_size_metrics.txt
425c433 |
Commit 27709bd fixes insert size metric diff problem 1c1
< w_blocking
---
> w_blocking_PREV |
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Separate rule hierarchy for paired and single end, incorporating cfCHiP in as another hierarchical import in
Snakemake