Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Extract specific information from feature_map and matched to ConsensusMap #438

Open
chulexuexibiedebushihewo opened this issue Jun 26, 2024 · 1 comment

Comments

@chulexuexibiedebushihewo

Hi! OpenMS is a good tool. I have a quetion, but I don't know how to resolve it, could you give me some advice?

I have six featuremaps and a consensusMap have been produced as well.
But now I want to extract some features in consensusMap. These features achieved some caterra, such as RT and mz which I have set.

The features in consensusMap seems cannot get the information (RT, mz, intensiity) of each featuremaps.

Such as :
image
How can I know the mz, RT and quality values of feature 0 in "2012_02_03_PStd_050_1", "2012_02_03_PStd_050_2", "2012_02_03_PStd_050_3" sample, respectively.

Could you give me some advice! Thank you very much !

@jpfeuffer
Copy link
Contributor

jpfeuffer commented Jun 27, 2024

Hi!

AFAIK This is currently not exposed to python.
You need to iterate over the ConsensusMap and get the information from the feature handles.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants