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This repository has been archived by the owner on Sep 24, 2019. It is now read-only.
The phase3 gene scaffolding algorithm is inaccurate. The algorithm expands the g(A) transcribedTo r(A) translatedTo p(A) chain based on a BEL document using EntrezGene ids. The algorithm should infer this chain using the compilation unit's declared namespace.
For example if the compilation unit contains p(HGNC:A) then add
If these statements already exist (even using equivalent terms) then skip. The BEL author may have already provided the scaffolding in which case the inference is redundant.
The benefits to this enhancement are:
Expansion using the declared namespace
Namespace decision left to the BEL author
One less document to manage
Faster algorithm
The text was updated successfully, but these errors were encountered:
The phase3 gene scaffolding algorithm is inaccurate. The algorithm expands the g(A) transcribedTo r(A) translatedTo p(A) chain based on a BEL document using EntrezGene ids. The algorithm should infer this chain using the compilation unit's declared namespace.
For example if the compilation unit contains p(HGNC:A) then add
If these statements already exist (even using equivalent terms) then skip. The BEL author may have already provided the scaffolding in which case the inference is redundant.
The benefits to this enhancement are:
The text was updated successfully, but these errors were encountered: