From 40174e076e18c861cc9c8bcf96480f6a9e682f3c Mon Sep 17 00:00:00 2001 From: Ali Ramadhan Date: Mon, 28 Oct 2024 11:15:14 -0600 Subject: [PATCH 1/3] Update Project.toml to support Oceananigans 0.93 --- Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Project.toml b/Project.toml index f8e8c5481..13ca0a923 100644 --- a/Project.toml +++ b/Project.toml @@ -24,7 +24,7 @@ EnsembleKalmanProcesses = "1" GibbsSeaWater = "0.1" JLD2 = "0.4, 0.5" KernelAbstractions = "0.9" -Oceananigans = "^0.92.1" +Oceananigans = "^0.92.1, ^0.93.0" OffsetArrays = "1.14" Roots = "2" SeawaterPolynomials = "0.3" From cb69f80a89a21c004c2874e3c8838812c651a8d6 Mon Sep 17 00:00:00 2001 From: ali-ramadhan Date: Tue, 29 Oct 2024 11:07:03 -0600 Subject: [PATCH 2/3] Update Manifest.toml --- Manifest.toml | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 68efbbf0e..ce037c528 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "12da5d1eabe1dd5798ee1a29e23ad2e10e287ad8" +project_hash = "b7b68895e3965b7930805d42785ca0f68052cac9" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -417,9 +417,9 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "b464b9b461ee989b435a689a4f7d870b68d467ed" +git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.5.6" +version = "0.5.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -435,9 +435,9 @@ version = "0.2.1+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8" +git-tree-sha1 = "e73a077abc7fe798fe940deabe30ef6c66bdde52" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.28" +version = "0.9.29" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -523,9 +523,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" +version = "1.17.0+1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -648,9 +648,9 @@ version = "1.2.0" [[deps.Oceananigans]] deps = ["Adapt", "CUDA", "Crayons", "CubedSphere", "Dates", "Distances", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "d32e4de90d49d0613c589dfa8d423b5c4f2248ca" +git-tree-sha1 = "cddb567fbab1c40b22914e24ad2fe917ff00d8c9" uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" -version = "0.92.1" +version = "0.93.1" [deps.Oceananigans.extensions] OceananigansEnzymeExt = "Enzyme" @@ -833,9 +833,9 @@ version = "0.3.5" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" +git-tree-sha1 = "305becf8af67eae1dbc912ee9097f00aeeabb8d5" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.5" +version = "1.4.6" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -979,15 +979,15 @@ version = "0.2.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" +git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.3+0" +version = "2.13.4+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.6+0" +version = "5.6.3+0" [[deps.Zlib_jll]] deps = ["Libdl"] From 14dfae01be57384f93eef90a1fbe5cf0868f8d84 Mon Sep 17 00:00:00 2001 From: ali-ramadhan Date: Tue, 29 Oct 2024 11:07:24 -0600 Subject: [PATCH 3/3] Bump version 0.13.2 --- Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Project.toml b/Project.toml index 13ca0a923..56cb17ddf 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "OceanBioME" uuid = "a49af516-9db8-4be4-be45-1dad61c5a376" authors = ["Jago Strong-Wright and contributors"] -version = "0.13.1" +version = "0.13.2" [deps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"