From 0997c987ae073a4b7dbf57f72542bfbe9568933a Mon Sep 17 00:00:00 2001 From: Jago Strong-Wright Date: Thu, 22 Aug 2024 17:50:41 +0100 Subject: [PATCH] updated Oceananigans --- Manifest.toml | 110 +++++++++++++++++++++++--------------------------- 1 file changed, 51 insertions(+), 59 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 94cc85832..8b45b3531 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.2" manifest_format = "2.0" -project_hash = "37e11a3bdd396c973917441db34ded05b97faa85" +project_hash = "bd1de93833dafc8fa6de30ae101c862f7fa5877e" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -93,9 +93,9 @@ version = "0.1.3" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "6e945e876652f2003e6ca74e19a3c45017d3e9f6" +git-tree-sha1 = "fdd9dfb67dfefd548f51000cc400bb51003de247" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.4.2" +version = "5.4.3" [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" @@ -108,10 +108,10 @@ version = "5.4.2" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "325058b426c2b421e3d2df3d5fa646d72d2e3e7e" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.1+1" +version = "0.9.2+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -160,9 +160,9 @@ version = "0.2.4" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -184,9 +184,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" +git-tree-sha1 = "a33b7ced222c6165f624a3f2b55945fac5a598d9" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.6" +version = "1.5.7" [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" @@ -324,10 +324,10 @@ uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "518ebd058c9895de468a8c255797b0c53fdb44dd" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "ab29216184312f99ff957b32cd63c2fe9c928b91" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.5" +version = "0.26.7" [[deps.GibbsSeaWater]] deps = ["GibbsSeaWater_jll", "Libdl", "Test"] @@ -394,14 +394,14 @@ deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.16" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -425,10 +425,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "bdbe8222d2f5703ad6a7019277d149ec6d78c301" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.48" +version = "0.4.51" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -443,22 +443,26 @@ uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "35ceea58aa34ad08b1ae00a52622c62d1cfb8ce2" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" +version = "0.9.24" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [deps.KernelAbstractions.weakdeps] EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "389aea28d882a40b5e1747069af71bdbd47a1cae" +git-tree-sha1 = "2470e69781ddd70b8878491233cd09bc1bd7fc96" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "7.2.1" +version = "8.1.0" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -466,9 +470,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +git-tree-sha1 = "597d1c758c9ae5d985ba4202386a607c675ee700" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" +version = "0.0.31+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -477,9 +481,9 @@ version = "1.0.0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "17.0.6+0" [[deps.LRUCache]] git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" @@ -557,9 +561,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" -version = "1.9.4+0" +version = "1.10.0+0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -669,11 +673,9 @@ version = "1.2.0" [[deps.Oceananigans]] deps = ["Adapt", "CUDA", "Crayons", "CubedSphere", "Dates", "Distances", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "1cb25d6ecc6647485a2c10da78fdae7dcce74262" -repo-rev = "main" -repo-url = "https://github.com/Clima/Oceananigans.jl" +git-tree-sha1 = "12cdd648cc342e52686515811c69bc4bc452a94c" uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" -version = "0.91.8" +version = "0.91.9" [deps.Oceananigans.extensions] OceananigansEnzymeExt = "Enzyme" @@ -704,9 +706,9 @@ version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "2f0a1d8c79bc385ec3fcda12830c9d0e72b30e71" +git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.4+0" +version = "5.0.5+0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -731,12 +733,6 @@ git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf" uuid = "c2071276-7c44-58a7-b746-946036e04d0a" version = "0.24.1+0" -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" @@ -803,10 +799,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -833,9 +829,9 @@ version = "1.3.0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] -git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +git-tree-sha1 = "3484138c9fa4296a0cf46a74ca3f97b59d12b1d0" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.1.5" +version = "2.1.6" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1003,13 +999,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "d73336d81cafdc277ff45558bb7eaa2b04a8e472" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.10" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -1025,15 +1017,15 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" +git-tree-sha1 = "4073c836c2befcb041e5fe306cb6abf621eb3140" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" +version = "0.2.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" +git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.1+0" +version = "2.13.3+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"]