Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add json files to create the examples in the book #150

Open
nadavrap opened this issue Aug 16, 2023 · 0 comments
Open

Add json files to create the examples in the book #150

nadavrap opened this issue Aug 16, 2023 · 0 comments

Comments

@nadavrap
Copy link

I suggest to add json files (or link to json files) to help with the ATLAS examples (cohorts, characterization, pathways, incidence and more).
In the current status, if I want to reproduce the pathway analysis examples of first line treatment for hypertension that is given in the book (Chapter 11.9), I need to define many concept sets and cohorts. Or I need to look for one that was created in the ATLAS-demo and make sure that it corresponds the description which is not a trivial task.

I would like to contribute, but I'm not sure what would be the best option. I thought of severals:

  1. Link to (or give the id of) the example in ATLAS-demo. The limitation - If someone change the example on the web if it is not locked.
  2. Create a json file and add as plain text to the book of OHDSI
  3. Create a json file and put a link in the Book. Q: Where to store the link? Under books's files (e.g. extras folder) or external location (personal repo?).
  4. Create a script that load a json file to the ATLAS using WebAPI. Limitation - I'm not sure if it's fully implemented for characterization, PLP etc., or it is only support cohort and concept sets upload.

Any suggestions?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant