Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Plan to effectively push COB forward #214

Open
3 tasks
cmungall opened this issue Oct 6, 2022 · 1 comment
Open
3 tasks

Plan to effectively push COB forward #214

cmungall opened this issue Oct 6, 2022 · 1 comment

Comments

@cmungall
Copy link
Contributor

cmungall commented Oct 6, 2022

from slack discussion

could you formulate a battle plan on how we could most effectively push COB forward? Maybe an inside out strategy where we COBbify 10-20 core OBO ontologies and then provide instructions to the community to follow suit? I am looking for something like this:

  • Import COB (keep BFO import? Remove?).
  • Check that none of your ontology classes fall outside of COB
  • If they do, request a new (root) term and push push push until it gets in COB

As I see it there is work that needs to happen on 3 largely independent aspects

  1. Technical-logical-release-management
  2. Increasing coverage across OBO
  3. Solving intractable upper ontology modeling issues

Help is appreciated on all these aspects

1. Technical-logical-release-management

For 1, let us keep our efforts focused on the end goal of enabling individual ontologies to completely use COB as the sole upper ontology, as currently documented here:

https://obofoundry.org/COB/using-cob/

This page highlights some of the challenges, some of which are described in GitHub issues here, e.g. #213 (we could do with some organization of our issues, so that it's easy to see all technical blockers)

2. Increasing coverage across OBO

For 2, @cthoyt suggests doing this in concert with http://purl.obolibrary.org/obo/IAO_0000700 which is a great idea (I think we should actually make this a dashboard requirement - and this makes the ontology much more friendly in OLS even without COB). Note that 2 may depend somewhat on 3:

3. Solving intractable upper ontology modeling issues

We all know which ones these are. Let's keep discussing these - but keep them on the relevant issue, which should be easy to find (again, some organization would help here).

If we want to discuss a general strategy for addressing these issues - e.g. Schulzian conflation - then let's make a separate issue for these.

Let's use this issue here for discussing high level strategy, and formal criteria for what success or a series of small wins looks like.

@StroemPhi
Copy link

StroemPhi commented Oct 6, 2022

What I'm currently missing in COB are textual definitions. This violates OBO principle 6.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants