{2023.06}[gompi/2023a] bio-packages - set1 #416

TopRichard · 2024-07-02T15:02:50Z

Bio packages found on Saga.

missing packages :

BWA-0.7.18-GCCcore-12.3.0.eb       Lic--> GPL3 
CapnProto-1.0.1-GCCcore-12.3.0.eb Lic --> MIT
DendroPy-4.6.1-GCCcore-12.3.0.eb Lic--> MIT/BSD
DIAMOND-2.1.8-GCC-12.3.0.eb Lic --> GPL3 
FastME-2.1.6.3-GCC-12.3.0.eb Lic --> MIT/GPL
fastp-0.23.4-GCC-12.3.0.eb  Lic --> MIT
HMMER-3.4-gompi-2023a.eb Lic --> MIT/GPL
IQ-TREE-2.3.5-gompi-2023a.eb  Lic --> GPL2
KronaTools-2.8.1-GCCcore-12.3.0.eb Lic --> FREE(https://raw.githubusercontent.com/marbl/Krona/master/KronaTools/LICENSE.txt)
LSD2-2.4.1-GCCcore-12.3.0.eb Lic--> GPL2
MAFFT-7.520-GCC-12.3.0-with-extensions.eb Lic --> BSD
MMseqs2-14-7e284-gompi-2023a.eb --> GPL3
ncbi-vdb-3.0.10-gompi-2023a.eb Lic --> Public Domain

nessi-bot · 2024-07-02T15:02:54Z

Instance AWS-MC-NESSI is configured to build for:

architectures: x86_64/generic, x86_64/intel/skylake_avx512, x86_64/amd/zen2, aarch64/generic
repositories: nessi-2023.06-swl-deb11, nessi-2023.06-swl-deb10, nessi-2023.06-cl

nessi-bot · 2024-07-02T15:02:54Z

Instance eX3-NESSI is configured to build for:

architectures: x86_64/amd/zen2, aarch64/generic
repositories: nessi-2023.06-swl-deb10, nessi-2023.06-swl-deb11, nessi-2023.06-cl

nessi-bot · 2024-07-02T15:02:54Z

Instance Fram-NESSI is configured to build for:

architectures: x86_64/generic, x86_64/intel/broadwell
repositories: nessi-2023.06-swl-deb11, nessi-2023.06-cl, nessi-2023.06-swl-deb10

nessi-bot · 2024-07-02T15:02:55Z

Instance Saga-NESSI is configured to build for:

architectures: x86_64/intel/skylake_avx512, x86_64/intel/broadwell, x86_64/generic
repositories: nessi-2023.06-cl, nessi-2023.06-swl-deb11, nessi-2023.06-swl-deb10

TopRichard · 2024-07-02T15:03:16Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2024-07-02T15:03:20Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T15:03:20Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 222256, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-02T15:03:21Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 11899873, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 11899875, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T15:03:21Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 13709, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 13710, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T15:03:27Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.07/pr_416/222256

date	job status	comment
Jul 02 03:03:26 PM UTC 2024	submitted	job id `222256` awaits release by job manager
Jul 02 03:03:37 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 03:04:39 PM UTC 2024	running	job `222256` is running
Jul 02 03:23:00 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-222256.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 02 03:23:00 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-222256.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-02T15:03:29Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13709

date	job status	comment
Jul 02 15:03:28 UTC 2024	submitted	job id `13709` awaits release by job manager
Jul 02 15:04:10 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 15:10:14 UTC 2024	running	job `13709` is running
Jul 02 15:53:34 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13709.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1719935149.tar.gz` size: 60 MiB (63726490 bytes) entries: 1684 modules under 2023.06/software/linux/x86_64/generic/modules/all `BWA/0.7.17-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.2.2.7-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MEGAHIT/1.2.9-GCCcore-12.3.0.lua` `minimap2/2.26-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` `STAR/2.7.11a-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `BWA/0.7.17-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.2.2.7-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MEGAHIT/1.2.9-GCCcore-12.3.0` `minimap2/2.26-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` `STAR/2.7.11a-GCC-12.3.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Jul 02 15:53:34 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13709.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-02T15:03:34Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13710

date	job status	comment
Jul 02 15:03:33 UTC 2024	submitted	job id `13710` awaits release by job manager
Jul 02 15:04:08 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 15:10:12 UTC 2024	running	job `13710` is running
Jul 02 15:56:38 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13710.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1719935208.tar.gz` size: 62 MiB (65062575 bytes) entries: 1684 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BWA/0.7.17-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.2.2.7-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MEGAHIT/1.2.9-GCCcore-12.3.0.lua` `minimap2/2.26-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` `STAR/2.7.11a-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BWA/0.7.17-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.2.2.7-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MEGAHIT/1.2.9-GCCcore-12.3.0` `minimap2/2.26-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` `STAR/2.7.11a-GCC-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Jul 02 15:56:38 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13710.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-02T15:03:50Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_416/11899873

date	job status	comment
Jul 02 03:03:49 PM UTC 2024	submitted	job id `11899873` awaits release by job manager
Jul 02 03:04:38 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 03:05:43 PM UTC 2024	running	job `11899873` is running
Jul 02 04:32:39 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11899873.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1719937235.tar.gz` size: 62 MiB (65221483 bytes) entries: 1684 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `BWA/0.7.17-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.2.2.7-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MEGAHIT/1.2.9-GCCcore-12.3.0.lua` `minimap2/2.26-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` `STAR/2.7.11a-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `BWA/0.7.17-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.2.2.7-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MEGAHIT/1.2.9-GCCcore-12.3.0` `minimap2/2.26-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` `STAR/2.7.11a-GCC-12.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell no other files in tarball
Jul 02 04:32:39 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11899873.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-02T15:04:15Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_416/11899875

date	job status	comment
Jul 02 03:04:14 PM UTC 2024	submitted	job id `11899875` awaits release by job manager
Jul 02 03:04:40 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 03:05:44 PM UTC 2024	running	job `11899875` is running
Jul 02 04:13:15 PM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11899875.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1719935971.tar.gz` size: 61 MiB (64933297 bytes) entries: 1684 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `BWA/0.7.17-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.2.2.7-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MEGAHIT/1.2.9-GCCcore-12.3.0.lua` `minimap2/2.26-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` `STAR/2.7.11a-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `BWA/0.7.17-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.2.2.7-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MEGAHIT/1.2.9-GCCcore-12.3.0` `minimap2/2.26-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` `STAR/2.7.11a-GCC-12.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Jul 02 04:13:15 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11899875.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

TopRichard · 2024-07-02T16:53:10Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic
bot: build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic

nessi-bot · 2024-07-02T16:53:34Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 222258, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-02T16:53:34Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 13711, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T16:53:34Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T16:53:35Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T16:53:38Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13711

date	job status	comment
Jul 02 16:53:37 UTC 2024	submitted	job id `13711` awaits release by job manager
Jul 02 16:53:45 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 17:00:48 UTC 2024	running	job `13711` is running
Jul 02 17:44:33 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13711.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1719941738.tar.gz` size: 60 MiB (63723827 bytes) entries: 1684 modules under 2023.06/software/linux/x86_64/generic/modules/all `BWA/0.7.17-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.2.2.7-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MEGAHIT/1.2.9-GCCcore-12.3.0.lua` `minimap2/2.26-GCCcore-12.3.0.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` `STAR/2.7.11a-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `BWA/0.7.17-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.2.2.7-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MEGAHIT/1.2.9-GCCcore-12.3.0` `minimap2/2.26-GCCcore-12.3.0` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` `STAR/2.7.11a-GCC-12.3.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Jul 02 17:44:33 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13711.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-02T16:53:39Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.07/pr_416/222258

date	job status	comment
Jul 02 04:53:38 PM UTC 2024	submitted	job id `222258` awaits release by job manager
Jul 02 04:54:10 PM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 04:55:13 PM UTC 2024	running	job `222258` is running
Jul 02 05:12:32 PM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-222258.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 02 05:12:32 PM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-222258.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

TopRichard · 2024-07-02T18:56:01Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2024-07-02T18:56:04Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 13712, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-02T18:56:04Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T18:56:05Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T18:56:05Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-02T18:56:08Z

New job on instance AWS-MC-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13712

date	job status	comment
Jul 02 18:56:07 UTC 2024	submitted	job id `13712` awaits release by job manager
Jul 02 18:56:41 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 02 19:01:44 UTC 2024	running	job `13712` is running
Jul 02 19:19:02 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13712.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 02 19:19:02 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13712.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-05T07:34:01Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 224924, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-05T07:34:01Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 13870, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 13871, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T07:34:02Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T07:34:02Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 11914009, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 11914010, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T07:34:06Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13870

date	job status	comment
Jul 05 07:34:05 UTC 2024	submitted	job id `13870` awaits release by job manager
Jul 05 07:34:37 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 07:39:43 UTC 2024	running	job `13870` is running
Jul 05 08:20:50 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13870.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1720167151.tar.gz` size: 55 MiB (58068535 bytes) entries: 1548 modules under 2023.06/software/linux/x86_64/generic/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Jul 05 08:20:50 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13870.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 05 10:10:59 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1720167151.tar.gz` to S3 bucket succeeded
Jul 05 10:15:47 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1720167151.tar.gz` downloaded to Stratum-0
Jul 05 10:16:12 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/514 to approve ingest
Jul 05 10:34:42 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1720167151.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/514
Jul 05 10:45:17 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1720167151.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2024-07-05T07:34:09Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.07/pr_416/224924

date	job status	comment
Jul 05 07:34:08 AM UTC 2024	submitted	job id `224924` awaits release by job manager
Jul 05 07:34:56 AM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 07:36:00 AM UTC 2024	running	job `224924` is running
Jul 05 08:19:25 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-224924.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1720166964.tar.gz` size: 52 MiB (54570001 bytes) entries: 1548 modules under 2023.06/software/linux/aarch64/generic/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Jul 05 08:19:25 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-224924.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 05 10:10:55 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1720166964.tar.gz` to S3 bucket succeeded
Jul 05 10:15:36 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1720166964.tar.gz` downloaded to Stratum-0
Jul 05 10:16:01 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/512 to approve ingest
Jul 05 10:34:34 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1720166964.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/512
Jul 05 10:37:59 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1720166964.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2024-07-05T07:34:12Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13871

date	job status	comment
Jul 05 07:34:11 UTC 2024	submitted	job id `13871` awaits release by job manager
Jul 05 07:34:35 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 07:39:40 UTC 2024	running	job `13871` is running
Jul 05 08:16:42 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13871.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1720166776.tar.gz` size: 24 MiB (25959265 bytes) entries: 699 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `LSD2/2.4.1-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Jul 05 08:16:42 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13871.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-07-05T07:34:20Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_416/11914009

date	job status	comment
Jul 05 07:34:19 AM UTC 2024	submitted	job id `11914009` awaits release by job manager
Jul 05 07:35:05 AM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 07:36:12 AM UTC 2024	running	job `11914009` is running
Jul 05 08:54:32 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11914009.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1720168945.tar.gz` size: 56 MiB (59327565 bytes) entries: 1548 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/broadwell no other files in tarball
Jul 05 08:54:32 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11914009.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 05 10:11:37 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1720168945.tar.gz` to S3 bucket succeeded
Jul 05 10:15:51 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1720168945.tar.gz` downloaded to Stratum-0
Jul 05 10:16:23 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/515 to approve ingest
Jul 05 10:34:46 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1720168945.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/515
Jul 05 10:47:40 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1720168945.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2024-07-05T07:34:32Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.07/pr_416/11914010

date	job status	comment
Jul 05 07:34:31 AM UTC 2024	submitted	job id `11914010` awaits release by job manager
Jul 05 07:35:08 AM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 07:36:15 AM UTC 2024	running	job `11914010` is running
Jul 05 08:29:39 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11914010.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720167491.tar.gz` size: 56 MiB (58962579 bytes) entries: 1548 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Jul 05 08:29:39 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11914010.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 05 10:11:13 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720167491.tar.gz` to S3 bucket succeeded
Jul 05 10:15:54 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720167491.tar.gz` downloaded to Stratum-0
Jul 05 10:16:29 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/516 to approve ingest
Jul 05 10:34:51 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720167491.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/516
Jul 05 10:50:27 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720167491.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

TopRichard · 2024-07-05T08:23:49Z

bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2

nessi-bot · 2024-07-05T08:23:52Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T08:23:52Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 224999, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-05T08:23:52Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T08:23:53Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T08:23:56Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.07/pr_416/224999

date	job status	comment
Jul 05 08:23:55 AM UTC 2024	submitted	job id `224999` awaits release by job manager
Jul 05 08:24:29 AM UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 08:27:32 AM UTC 2024	running	job `224999` is running
Jul 05 08:28:33 AM UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-224999.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 08:28:33 AM UTC 2024	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-224999.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

TopRichard · 2024-07-05T09:02:58Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2

nessi-bot · 2024-07-05T09:03:02Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 13874, for details & status see {2023.06}[gompi/2023a] bio-packages - set1 #416 (comment)

nessi-bot · 2024-07-05T09:03:02Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T09:03:02Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T09:03:02Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-07-05T09:03:06Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.07/pr_416/13874

date	job status	comment
Jul 05 09:03:05 UTC 2024	submitted	job id `13874` awaits release by job manager
Jul 05 09:03:56 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 09:04:59 UTC 2024	running	job `13874` is running
Jul 05 09:47:11 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13874.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1720172210.tar.gz` size: 56 MiB (59275400 bytes) entries: 1548 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `MMseqs2/14-7e284-gompi-2023a.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `MMseqs2/14-7e284-gompi-2023a` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Jul 05 09:47:11 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13874.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 05 10:11:21 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1720172210.tar.gz` to S3 bucket succeeded
Jul 05 10:15:43 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1720172210.tar.gz` downloaded to Stratum-0
Jul 05 10:16:07 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/513 to approve ingest
Jul 05 10:34:38 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1720172210.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/513
Jul 05 10:40:52 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1720172210.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

TopRichard · 2024-07-05T10:10:56Z

Checklist before starting deployment (setting bot:deploy label):

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

TopRichard · 2024-07-05T13:05:39Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

Check if the SPDX license identifier is provided
at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI for the ingested tarballs have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; for software_name in BWA/0.7.17-20220923-GCCcore-12.3.0 CapnProto/1.0.1-GCCcore-12.3.0 DendroPy/4.6.1-GCCcore-12.3.0 DIAMOND/
2.1.8-GCC-12.3.0 FastME/2.1.6.3-GCC-12.3.0 fastp/0.23.4-GCC-12.3.0 HMMER/3.4-gompi-2023a IQ-TREE/2.3.5-gompi-2023a KronaTools/2.8.1-GCCcore-12.3.0 LSD2/2.4.1-GCCcore-12.3.0 MAFFT/7.520-GCC-12.3.0-with-extensions
MMseqs2/14-7e284-gompi-2023a ncbi-vdb/3.0.10-gompi-2023a; do ls -l x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/$software_name* aarch64/generic/{software,modules/all}/$software_name* ; done

log (note, output includes -bare modules)

-rw-r--r--. 1 cvmfs cvmfs 1360 Apr 14 11:16 aarch64/generic/modules/all/BWA/0.7.17-20220923-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1360 Apr 14 11:23 x86_64/amd/zen2/modules/all/BWA/0.7.17-20220923-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1359 Apr 14 11:23 x86_64/generic/modules/all/BWA/0.7.17-20220923-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1367 Apr 14 11:32 x86_64/intel/broadwell/modules/all/BWA/0.7.17-20220923-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1372 Apr 14 11:17 x86_64/intel/skylake_avx512/modules/all/BWA/0.7.17-20220923-GCCcore-12.3.0.lua

aarch64/generic/software/BWA/0.7.17-20220923-GCCcore-12.3.0:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:16 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:16 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:16 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:16 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 14 11:16 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:16 man

x86_64/amd/zen2/software/BWA/0.7.17-20220923-GCCcore-12.3.0:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:23 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:23 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 14 11:23 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 man

x86_64/generic/software/BWA/0.7.17-20220923-GCCcore-12.3.0:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:23 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:23 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 14 11:23 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:23 man

x86_64/intel/broadwell/software/BWA/0.7.17-20220923-GCCcore-12.3.0:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:32 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:32 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:32 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:32 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 14 11:32 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:32 man

x86_64/intel/skylake_avx512/software/BWA/0.7.17-20220923-GCCcore-12.3.0:
total 23
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:17 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:17 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:17 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 14 11:17 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 14 11:17 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 14 11:17 man

-rw-r--r--. 1 cvmfs cvmfs 1102 Jul  5 07:46 aarch64/generic/modules/all/CapnProto/1.0.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1102 Jul  5 09:16 x86_64/amd/zen2/modules/all/CapnProto/1.0.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1101 Jul  5 07:53 x86_64/generic/modules/all/CapnProto/1.0.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1109 Jul  5 07:56 x86_64/intel/broadwell/modules/all/CapnProto/1.0.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1114 Jul  5 07:52 x86_64/intel/skylake_avx512/modules/all/CapnProto/1.0.1-GCCcore-12.3.0.lua

aarch64/generic/software/CapnProto/1.0.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:46 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:46 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:46 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:46 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:46 lib64 -> lib

x86_64/amd/zen2/software/CapnProto/1.0.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:16 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:16 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 09:16 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 09:16 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 09:16 lib64 -> lib

x86_64/generic/software/CapnProto/1.0.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:53 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:53 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:53 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:53 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:53 lib64 -> lib

x86_64/intel/broadwell/software/CapnProto/1.0.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:56 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:56 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:56 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:56 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:56 lib64 -> lib

x86_64/intel/skylake_avx512/software/CapnProto/1.0.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:52 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:52 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:52 include
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Jul  5 07:52 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:52 lib64 -> lib

-rw-r--r--. 1 cvmfs cvmfs 1276 Jul  5 07:46 aarch64/generic/modules/all/DendroPy/4.6.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1276 Jul  5 09:17 x86_64/amd/zen2/modules/all/DendroPy/4.6.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1275 Jul  5 07:55 x86_64/generic/modules/all/DendroPy/4.6.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1283 Jul  5 07:57 x86_64/intel/broadwell/modules/all/DendroPy/4.6.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1288 Jul  5 07:53 x86_64/intel/skylake_avx512/modules/all/DendroPy/4.6.1-GCCcore-12.3.0.lua

aarch64/generic/software/DendroPy/4.6.1-GCCcore-12.3.0:
total 14
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:46 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:46 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:46 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:46 lib64 -> lib

x86_64/amd/zen2/software/DendroPy/4.6.1-GCCcore-12.3.0:
total 14
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:17 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:17 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:17 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 09:17 lib64 -> lib

x86_64/generic/software/DendroPy/4.6.1-GCCcore-12.3.0:
total 14
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:54 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:55 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:54 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:54 lib64 -> lib

x86_64/intel/broadwell/software/DendroPy/4.6.1-GCCcore-12.3.0:
total 14
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:56 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:57 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:56 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:56 lib64 -> lib

x86_64/intel/skylake_avx512/software/DendroPy/4.6.1-GCCcore-12.3.0:
total 14
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:53 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:53 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:53 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:53 lib64 -> lib

-rw-r--r--. 1 cvmfs cvmfs  875 Jul  5 07:48 aarch64/generic/modules/all/DIAMOND/2.1.8-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  875 Jul  5 09:20 x86_64/amd/zen2/modules/all/DIAMOND/2.1.8-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  874 Jul  5 07:57 x86_64/generic/modules/all/DIAMOND/2.1.8-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  882 Jul  5 08:04 x86_64/intel/broadwell/modules/all/DIAMOND/2.1.8-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  887 Jul  5 07:56 x86_64/intel/skylake_avx512/modules/all/DIAMOND/2.1.8-GCC-12.3.0.lua

aarch64/generic/software/DIAMOND/2.1.8-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:48 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:48 easybuild

x86_64/amd/zen2/software/DIAMOND/2.1.8-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:20 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:20 easybuild

x86_64/generic/software/DIAMOND/2.1.8-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:57 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:57 easybuild

x86_64/intel/broadwell/software/DIAMOND/2.1.8-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:04 easybuild

x86_64/intel/skylake_avx512/software/DIAMOND/2.1.8-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:56 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:56 easybuild

-rw-r--r--. 1 cvmfs cvmfs  951 Jul  5 07:48 aarch64/generic/modules/all/FastME/2.1.6.3-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  951 Jul  5 09:20 x86_64/amd/zen2/modules/all/FastME/2.1.6.3-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  950 Jul  5 07:58 x86_64/generic/modules/all/FastME/2.1.6.3-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  958 Jul  5 08:05 x86_64/intel/broadwell/modules/all/FastME/2.1.6.3-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  963 Jul  5 07:56 x86_64/intel/skylake_avx512/modules/all/FastME/2.1.6.3-GCC-12.3.0.lua

aarch64/generic/software/FastME/2.1.6.3-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:48 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:48 easybuild

x86_64/amd/zen2/software/FastME/2.1.6.3-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:20 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:20 easybuild

x86_64/generic/software/FastME/2.1.6.3-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:58 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:58 easybuild

x86_64/intel/broadwell/software/FastME/2.1.6.3-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:05 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:05 easybuild

x86_64/intel/skylake_avx512/software/FastME/2.1.6.3-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:56 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:56 easybuild

-rw-r--r--. 1 cvmfs cvmfs 1287 Jul  5 07:48 aarch64/generic/modules/all/fastp/0.23.4-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1287 Jul  5 09:21 x86_64/amd/zen2/modules/all/fastp/0.23.4-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1286 Jul  5 07:58 x86_64/generic/modules/all/fastp/0.23.4-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1294 Jul  5 08:05 x86_64/intel/broadwell/modules/all/fastp/0.23.4-GCC-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1299 Jul  5 07:57 x86_64/intel/skylake_avx512/modules/all/fastp/0.23.4-GCC-12.3.0.lua

aarch64/generic/software/fastp/0.23.4-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:48 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:48 easybuild

x86_64/amd/zen2/software/fastp/0.23.4-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:21 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:21 easybuild

x86_64/generic/software/fastp/0.23.4-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:58 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:58 easybuild

x86_64/intel/broadwell/software/fastp/0.23.4-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:05 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:05 easybuild

x86_64/intel/skylake_avx512/software/fastp/0.23.4-GCC-12.3.0:
total 9
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:57 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:57 easybuild

-rw-r--r--. 1 cvmfs cvmfs 2098 Jul  5 07:52 aarch64/generic/modules/all/HMMER/3.4-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 2098 Jul  5 09:24 x86_64/amd/zen2/modules/all/HMMER/3.4-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 2097 Jul  5 08:00 x86_64/generic/modules/all/HMMER/3.4-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 2105 Jul  5 08:10 x86_64/intel/broadwell/modules/all/HMMER/3.4-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 2110 Jul  5 08:01 x86_64/intel/skylake_avx512/modules/all/HMMER/3.4-gompi-2023a.lua

aarch64/generic/software/HMMER/3.4-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:52 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:52 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:52 share

x86_64/amd/zen2/software/HMMER/3.4-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:24 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:24 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:24 share

x86_64/generic/software/HMMER/3.4-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:00 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:00 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:00 share

x86_64/intel/broadwell/software/HMMER/3.4-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:10 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:10 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:10 share

x86_64/intel/skylake_avx512/software/HMMER/3.4-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:01 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:01 share

-rw-r--r--. 1 cvmfs cvmfs 1037 Jul  5 08:04 aarch64/generic/modules/all/IQ-TREE/2.3.5-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1037 Jul  5 09:33 x86_64/amd/zen2/modules/all/IQ-TREE/2.3.5-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1036 Jul  5 08:09 x86_64/generic/modules/all/IQ-TREE/2.3.5-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1044 Jul  5 08:31 x86_64/intel/broadwell/modules/all/IQ-TREE/2.3.5-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1049 Jul  5 08:12 x86_64/intel/skylake_avx512/modules/all/IQ-TREE/2.3.5-gompi-2023a.lua

aarch64/generic/software/IQ-TREE/2.3.5-gompi-2023a:
total 2347
dr-xr-xr-x. 2 cvmfs cvmfs    4096 Jul  5 08:02 bin
dr-xr-xr-x. 3 cvmfs cvmfs    4096 Jul  5 08:04 easybuild
-r--r--r--. 1 cvmfs cvmfs 2237314 Jun 26 04:33 example.cf
-r--r--r--. 1 cvmfs cvmfs     174 Jun 26 04:33 example.nex
-r--r--r--. 1 cvmfs cvmfs   34178 Jun 26 04:33 example.phy
-r--r--r--. 1 cvmfs cvmfs  121669 Jun 26 04:33 models.nex

x86_64/amd/zen2/software/IQ-TREE/2.3.5-gompi-2023a:
total 2347
dr-xr-xr-x. 2 cvmfs cvmfs    4096 Jul  5 09:32 bin
dr-xr-xr-x. 3 cvmfs cvmfs    4096 Jul  5 09:33 easybuild
-r--r--r--. 1 cvmfs cvmfs 2237314 Jun 26 04:33 example.cf
-r--r--r--. 1 cvmfs cvmfs     174 Jun 26 04:33 example.nex
-r--r--r--. 1 cvmfs cvmfs   34178 Jun 26 04:33 example.phy
-r--r--r--. 1 cvmfs cvmfs  121669 Jun 26 04:33 models.nex

x86_64/generic/software/IQ-TREE/2.3.5-gompi-2023a:
total 2347
dr-xr-xr-x. 2 cvmfs cvmfs    4096 Jul  5 08:08 bin
dr-xr-xr-x. 3 cvmfs cvmfs    4096 Jul  5 08:09 easybuild
-r--r--r--. 1 cvmfs cvmfs 2237314 Jun 26 04:33 example.cf
-r--r--r--. 1 cvmfs cvmfs     174 Jun 26 04:33 example.nex
-r--r--r--. 1 cvmfs cvmfs   34178 Jun 26 04:33 example.phy
-r--r--r--. 1 cvmfs cvmfs  121669 Jun 26 04:33 models.nex

x86_64/intel/broadwell/software/IQ-TREE/2.3.5-gompi-2023a:
total 2347
dr-xr-xr-x. 2 cvmfs cvmfs    4096 Jul  5 08:30 bin
dr-xr-xr-x. 3 cvmfs cvmfs    4096 Jul  5 08:31 easybuild
-r--r--r--. 1 cvmfs cvmfs 2237314 Jun 26 04:33 example.cf
-r--r--r--. 1 cvmfs cvmfs     174 Jun 26 04:33 example.nex
-r--r--r--. 1 cvmfs cvmfs   34178 Jun 26 04:33 example.phy
-r--r--r--. 1 cvmfs cvmfs  121669 Jun 26 04:33 models.nex

x86_64/intel/skylake_avx512/software/IQ-TREE/2.3.5-gompi-2023a:
total 2347
dr-xr-xr-x. 2 cvmfs cvmfs    4096 Jul  5 08:12 bin
dr-xr-xr-x. 3 cvmfs cvmfs    4096 Jul  5 08:13 easybuild
-r--r--r--. 1 cvmfs cvmfs 2237314 Jun 26 04:33 example.cf
-r--r--r--. 1 cvmfs cvmfs     174 Jun 26 04:33 example.nex
-r--r--r--. 1 cvmfs cvmfs   34178 Jun 26 04:33 example.phy
-r--r--r--. 1 cvmfs cvmfs  121669 Jun 26 04:33 models.nex

-rw-r--r--.  1 cvmfs cvmfs 1238 Jul  5 08:04 aarch64/generic/modules/all/KronaTools/2.8.1-GCCcore-12.3.0.lua
-rw-rw-r--.  1 cvmfs cvmfs 1238 Jul  5 09:33 x86_64/amd/zen2/modules/all/KronaTools/2.8.1-GCCcore-12.3.0.lua
-rw-rw-r--.  1 cvmfs cvmfs 1237 Jul  5 08:09 x86_64/generic/modules/all/KronaTools/2.8.1-GCCcore-12.3.0.lua
-rw-rw-r--.  1 cvmfs cvmfs 1245 Jul  5 08:31 x86_64/intel/broadwell/modules/all/KronaTools/2.8.1-GCCcore-12.3.0.lua
-rw-rw-r--.  1 cvmfs cvmfs 1250 Jul  5 08:13 x86_64/intel/skylake_avx512/modules/all/KronaTools/2.8.1-GCCcore-12.3.0.lua

aarch64/generic/software/KronaTools/2.8.1-GCCcore-12.3.0:
total 52
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 bin
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 data
-r-xr-xr-x. 1 cvmfs cvmfs  820 Sep  4  2018 deployResources.sh
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:04 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 img
-r-xr-xr-x. 1 cvmfs cvmfs 2229 Sep  4  2018 install.pl
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:04 lib64 -> lib
-r--r--r--. 1 cvmfs cvmfs 3628 Jan 13  2017 LICENSE.txt
-r--r--r--. 1 cvmfs cvmfs  272 Sep  4  2018 README.txt
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 scripts
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 src
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Feb 12  2021 taxonomy
-r-xr-xr-x. 1 cvmfs cvmfs  367 Sep  4  2018 updateAccessions.sh
-r-xr-xr-x. 1 cvmfs cvmfs 6556 May 13  2019 updateTaxonomy.sh

x86_64/amd/zen2/software/KronaTools/2.8.1-GCCcore-12.3.0:
total 52
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 bin
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 data
-r-xr-xr-x. 1 cvmfs cvmfs  820 Sep  4  2018 deployResources.sh
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:33 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 img
-r-xr-xr-x. 1 cvmfs cvmfs 2229 Sep  4  2018 install.pl
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 09:33 lib64 -> lib
-r--r--r--. 1 cvmfs cvmfs 3628 Jan 13  2017 LICENSE.txt
-r--r--r--. 1 cvmfs cvmfs  272 Sep  4  2018 README.txt
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 scripts
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 src
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Feb 12  2021 taxonomy
-r-xr-xr-x. 1 cvmfs cvmfs  367 Sep  4  2018 updateAccessions.sh
-r-xr-xr-x. 1 cvmfs cvmfs 6556 May 13  2019 updateTaxonomy.sh

x86_64/generic/software/KronaTools/2.8.1-GCCcore-12.3.0:
total 52
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 bin
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 data
-r-xr-xr-x. 1 cvmfs cvmfs  820 Sep  4  2018 deployResources.sh
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:09 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 img
-r-xr-xr-x. 1 cvmfs cvmfs 2229 Sep  4  2018 install.pl
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:09 lib64 -> lib
-r--r--r--. 1 cvmfs cvmfs 3628 Jan 13  2017 LICENSE.txt
-r--r--r--. 1 cvmfs cvmfs  272 Sep  4  2018 README.txt
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 scripts
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 src
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Feb 12  2021 taxonomy
-r-xr-xr-x. 1 cvmfs cvmfs  367 Sep  4  2018 updateAccessions.sh
-r-xr-xr-x. 1 cvmfs cvmfs 6556 May 13  2019 updateTaxonomy.sh

x86_64/intel/broadwell/software/KronaTools/2.8.1-GCCcore-12.3.0:
total 52
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 bin
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 data
-r-xr-xr-x. 1 cvmfs cvmfs  820 Sep  4  2018 deployResources.sh
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:31 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 img
-r-xr-xr-x. 1 cvmfs cvmfs 2229 Sep  4  2018 install.pl
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:31 lib64 -> lib
-r--r--r--. 1 cvmfs cvmfs 3628 Jan 13  2017 LICENSE.txt
-r--r--r--. 1 cvmfs cvmfs  272 Sep  4  2018 README.txt
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 scripts
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:31 src
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Feb 12  2021 taxonomy
-r-xr-xr-x. 1 cvmfs cvmfs  367 Sep  4  2018 updateAccessions.sh
-r-xr-xr-x. 1 cvmfs cvmfs 6556 May 13  2019 updateTaxonomy.sh

x86_64/intel/skylake_avx512/software/KronaTools/2.8.1-GCCcore-12.3.0:
total 52
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 bin
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 data
-r-xr-xr-x. 1 cvmfs cvmfs  820 Sep  4  2018 deployResources.sh
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:13 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 img
-r-xr-xr-x. 1 cvmfs cvmfs 2229 Sep  4  2018 install.pl
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:13 lib64 -> lib
-r--r--r--. 1 cvmfs cvmfs 3628 Jan 13  2017 LICENSE.txt
-r--r--r--. 1 cvmfs cvmfs  272 Sep  4  2018 README.txt
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 scripts
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 src
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Feb 12  2021 taxonomy
-r-xr-xr-x. 1 cvmfs cvmfs  367 Sep  4  2018 updateAccessions.sh
-r-xr-xr-x. 1 cvmfs cvmfs 6556 May 13  2019 updateTaxonomy.sh

-rw-r--r--. 1 cvmfs cvmfs  995 Jul  5 07:53 aarch64/generic/modules/all/LSD2/2.4.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  995 Jul  5 09:24 x86_64/amd/zen2/modules/all/LSD2/2.4.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs  994 Jul  5 08:01 x86_64/generic/modules/all/LSD2/2.4.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1002 Jul  5 08:11 x86_64/intel/broadwell/modules/all/LSD2/2.4.1-GCCcore-12.3.0.lua
-rw-rw-r--. 1 cvmfs cvmfs 1007 Jul  5 08:01 x86_64/intel/skylake_avx512/modules/all/LSD2/2.4.1-GCCcore-12.3.0.lua

aarch64/generic/software/LSD2/2.4.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:53 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 07:53 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:53 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 07:53 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 07:53 lib64 -> lib

x86_64/amd/zen2/software/LSD2/2.4.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:24 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:24 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:24 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:24 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 09:24 lib64 -> lib

x86_64/generic/software/LSD2/2.4.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:01 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:01 lib64 -> lib

x86_64/intel/broadwell/software/LSD2/2.4.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:11 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:11 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:11 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:11 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:11 lib64 -> lib

x86_64/intel/skylake_avx512/software/LSD2/2.4.1-GCCcore-12.3.0:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:01 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 include
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:01 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Jul  5 08:01 lib64 -> lib

-rw-r--r--. 1 cvmfs cvmfs 1503 Jul  5 08:05 aarch64/generic/modules/all/MAFFT/7.520-GCC-12.3.0-with-extensions.lua
-rw-rw-r--. 1 cvmfs cvmfs 1503 Jul  5 09:33 x86_64/amd/zen2/modules/all/MAFFT/7.520-GCC-12.3.0-with-extensions.lua
-rw-rw-r--. 1 cvmfs cvmfs 1502 Jul  5 08:09 x86_64/generic/modules/all/MAFFT/7.520-GCC-12.3.0-with-extensions.lua
-rw-rw-r--. 1 cvmfs cvmfs 1510 Jul  5 08:32 x86_64/intel/broadwell/modules/all/MAFFT/7.520-GCC-12.3.0-with-extensions.lua
-rw-rw-r--. 1 cvmfs cvmfs 1515 Jul  5 08:13 x86_64/intel/skylake_avx512/modules/all/MAFFT/7.520-GCC-12.3.0-with-extensions.lua

aarch64/generic/software/MAFFT/7.520-GCC-12.3.0-with-extensions:
total 18
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:04 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:05 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:04 libexec
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:04 share

x86_64/amd/zen2/software/MAFFT/7.520-GCC-12.3.0-with-extensions:
total 18
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:33 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:33 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:33 libexec
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:33 share

x86_64/generic/software/MAFFT/7.520-GCC-12.3.0-with-extensions:
total 18
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:09 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:09 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:09 libexec
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:09 share

x86_64/intel/broadwell/software/MAFFT/7.520-GCC-12.3.0-with-extensions:
total 18
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:32 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:32 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:32 libexec
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:32 share

x86_64/intel/skylake_avx512/software/MAFFT/7.520-GCC-12.3.0-with-extensions:
total 18
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:13 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:13 easybuild
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:13 libexec
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:13 share

-rw-r--r--. 1 cvmfs cvmfs  854 Jul  5 08:06 aarch64/generic/modules/all/MMseqs2/14-7e284-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs  854 Jul  5 09:34 x86_64/amd/zen2/modules/all/MMseqs2/14-7e284-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs  853 Jul  5 08:10 x86_64/generic/modules/all/MMseqs2/14-7e284-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs  861 Jul  5 08:37 x86_64/intel/broadwell/modules/all/MMseqs2/14-7e284-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs  866 Jul  5 08:15 x86_64/intel/skylake_avx512/modules/all/MMseqs2/14-7e284-gompi-2023a.lua

aarch64/generic/software/MMseqs2/14-7e284-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:06 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:06 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:06 util

x86_64/amd/zen2/software/MMseqs2/14-7e284-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:34 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 09:34 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 09:34 util

x86_64/generic/software/MMseqs2/14-7e284-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:10 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:10 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:10 util

x86_64/intel/broadwell/software/MMseqs2/14-7e284-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:37 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:38 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:37 util

x86_64/intel/skylake_avx512/software/MMseqs2/14-7e284-gompi-2023a:
total 14
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:15 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Jul  5 08:15 easybuild
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Jul  5 08:15 util

-rw-r--r--. 1 cvmfs cvmfs 1285 Jul  5 08:08 aarch64/generic/modules/all/ncbi-vdb/3.0.10-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1285 Jul  5 09:36 x86_64/amd/zen2/modules/all/ncbi-vdb/3.0.10-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1284 Jul  5 08:11 x86_64/generic/modules/all/ncbi-vdb/3.0.10-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1292 Jul  5 08:41 x86_64/intel/broadwell/modules/all/ncbi-vdb/3.0.10-gompi-2023a.lua
-rw-rw-r--. 1 cvmfs cvmfs 1297 Jul  5 08:17 x86_64/intel/skylake_avx512/modules/all/ncbi-vdb/3.0.10-gompi-2023a.lua

aarch64/generic/software/ncbi-vdb/3.0.10-gompi-2023a:
total 14
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:08 easybuild
dr-xr-xr-x. 24 cvmfs cvmfs 4096 Jul  5 08:08 include
lrwxrwxrwx.  1 cvmfs cvmfs    5 Jul  5 08:08 lib -> lib64
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:08 lib64

x86_64/amd/zen2/software/ncbi-vdb/3.0.10-gompi-2023a:
total 14
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 09:36 easybuild
dr-xr-xr-x. 24 cvmfs cvmfs 4096 Jul  5 09:35 include
lrwxrwxrwx.  1 cvmfs cvmfs    5 Jul  5 09:35 lib -> lib64
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 09:35 lib64

x86_64/generic/software/ncbi-vdb/3.0.10-gompi-2023a:
total 14
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:11 easybuild
dr-xr-xr-x. 24 cvmfs cvmfs 4096 Jul  5 08:11 include
lrwxrwxrwx.  1 cvmfs cvmfs    5 Jul  5 08:11 lib -> lib64
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:11 lib64

x86_64/intel/broadwell/software/ncbi-vdb/3.0.10-gompi-2023a:
total 14
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:41 easybuild
dr-xr-xr-x. 24 cvmfs cvmfs 4096 Jul  5 08:41 include
lrwxrwxrwx.  1 cvmfs cvmfs    5 Jul  5 08:41 lib -> lib64
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:41 lib64

x86_64/intel/skylake_avx512/software/ncbi-vdb/3.0.10-gompi-2023a:
total 14
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:17 easybuild
dr-xr-xr-x. 24 cvmfs cvmfs 4096 Jul  5 08:17 include
lrwxrwxrwx.  1 cvmfs cvmfs    5 Jul  5 08:17 lib -> lib64
dr-xr-xr-x.  3 cvmfs cvmfs 4096 Jul  5 08:17 lib64

justadejavu

Okay

TopRichard · 2024-07-05T13:08:40Z

Better use --from-commit

Use --from-commit

{2023.06}[gompi/2023a] bio-packages

575d256

TopRichard added the NESSI/2023.06 label Jul 2, 2024

BWA-0.7.18 supports ARM

37b2982

TopRichard added the bot:deploy label Jul 5, 2024

TopRichard added the ingested label Jul 5, 2024

TopRichard requested a review from justadejavu July 5, 2024 13:07

justadejavu approved these changes Jul 5, 2024

View reviewed changes

Update eessi-2023.06-eb-4.9.2-2023a.yml

befa4a1

Use --from-commit

TopRichard merged commit c111a7b into NorESSI:nessi.no-2023.06 Jul 5, 2024
23 checks passed

{2023.06}[gompi/2023a] bio-packages - set1 #416

{2023.06}[gompi/2023a] bio-packages - set1 #416

Conversation

TopRichard commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024

TopRichard commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

TopRichard commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

TopRichard commented Jul 2, 2024

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 2, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited by trz42 Loading

nessi-bot bot commented Jul 5, 2024 • edited by trz42 Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited by trz42 Loading

nessi-bot bot commented Jul 5, 2024 • edited by trz42 Loading

TopRichard commented Jul 5, 2024

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

TopRichard commented Jul 5, 2024

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited Loading

nessi-bot bot commented Jul 5, 2024 • edited by trz42 Loading

TopRichard commented Jul 5, 2024

TopRichard commented Jul 5, 2024 • edited Loading

justadejavu left a comment

Choose a reason for hiding this comment

TopRichard commented Jul 5, 2024

TopRichard commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 2, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited by trz42

Loading

nessi-bot bot commented Jul 5, 2024 •

edited by trz42

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited by trz42

Loading

nessi-bot bot commented Jul 5, 2024 •

edited by trz42

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited

Loading

nessi-bot bot commented Jul 5, 2024 •

edited by trz42

Loading

TopRichard commented Jul 5, 2024 •

edited

Loading