diff --git a/README.md b/README.md index 5c3bc56..13b81d3 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,7 @@ +--- + Confidence Estimation for Mass Spectrometry Proteomics **crema** is a Python package that implements various methods to estimate false discovery rates (FDR) of peptide diff --git a/crema/__pycache__/params.cpython-37.pyc b/crema/__pycache__/params.cpython-37.pyc index 31d1152..0136c8c 100644 Binary files a/crema/__pycache__/params.cpython-37.pyc and b/crema/__pycache__/params.cpython-37.pyc differ diff --git a/tests/test_cli.py b/tests/test_cli.py index a53abfd..c56bbd9 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -171,7 +171,7 @@ def test_cli_add_spectrum(tmp_path): cmd = [ "crema", "data/single_add_spectrum.csv", - "--scan", + "--spectrum", "scan", "extras", "--output_dir", diff --git a/tests/test_crema_methods.py b/tests/test_crema_methods.py index e9d1663..37e492e 100644 --- a/tests/test_crema_methods.py +++ b/tests/test_crema_methods.py @@ -148,11 +148,11 @@ "c", "d", "e", - "f", - "g", - "h", - "i", - "j", + "z", + "b", + "y", + "d", + "x", ], } )