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I am looking at the log file when I run casanovo in sequence mode, and it's not very informative. Here is what I see, after the long print-out of all the config options:
2024-02-14 17:18:42,503 INFO [casanovo/MainProcess] casanovo.sequence : Sequencing peptides from:
2024-02-14 17:18:42,503 INFO [casanovo/MainProcess] casanovo.sequence : immunotest_orbitrap.mgf
2024-02-14 17:18:42,869 INFO [depthcharge.data.hdf5/MainProcess] hdf5.__init__ : Reading 1 files...
I think there is some easy information we could add to make it more useful. This includes
o the full command line that was issued,
o the name of the host machine,
o the wall clock time at the start and end of the run, as well as the elapsed wall clock time,
o a final count of the number of spectra that were sequenced, and
o some statement at the end indicating that the run completed without error.
If it's possible to also include info about the total CPU and/or GPU usage, that would be great.
The text was updated successfully, but these errors were encountered:
I am looking at the log file when I run casanovo in
sequence
mode, and it's not very informative. Here is what I see, after the long print-out of all the config options:I think there is some easy information we could add to make it more useful. This includes
o the full command line that was issued,
o the name of the host machine,
o the wall clock time at the start and end of the run, as well as the elapsed wall clock time,
o a final count of the number of spectra that were sequenced, and
o some statement at the end indicating that the run completed without error.
If it's possible to also include info about the total CPU and/or GPU usage, that would be great.
The text was updated successfully, but these errors were encountered: