packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2024},
  url = {https://www.R-project.org/},
}

@Manual{R-bcdata,
  title = {bcdata: Search and Retrieve Data from the BC Data Catalogue},
  author = {Andy Teucher and Sam Albers and Stephanie Hazlitt},
  year = {2023},
  note = {R package version 0.4.1},
  url = {https://bcgov.github.io/bcdata/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 0.39},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-chron,
  title = {chron: Chronological Objects which Can Handle Dates and Times},
  author = {David James and Kurt Hornik},
  year = {2023},
  note = {R package version 2.3-61},
  url = {https://CRAN.R-project.org/package=chron},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Tyson Barrett and Matt Dowle and Arun Srinivasan and Jan Gorecki and Michael Chirico and Toby Hocking},
  year = {2024},
  note = {R package version 1.15.4},
  url = {https://r-datatable.com},
}

@Manual{R-datapasta,
  title = {datapasta: R Tools for Data Copy-Pasta},
  author = {Miles McBain and Jonathan Carroll and Sharla Gelfand and Suthira Owlarn and Garrick Aden-Buie},
  year = {2020},
  note = {R package version 3.1.0},
  url = {https://github.com/milesmcbain/datapasta},
}

@Manual{R-DBI,
  title = {DBI: R Database Interface},
  author = {{R Special Interest Group on Databases (R-SIG-DB)} and Hadley Wickham and Kirill Müller},
  year = {2024},
  note = {R package version 1.2.3},
  url = {https://dbi.r-dbi.org},
}

@Manual{R-devtools,
  title = {devtools: Tools to Make Developing R Packages Easier},
  author = {Hadley Wickham and Jim Hester and Winston Chang and Jennifer Bryan},
  year = {2022},
  note = {R package version 2.4.5},
  url = {https://devtools.r-lib.org/},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.4},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-elevatr,
  title = {elevatr: Access Elevation Data from Various APIs},
  author = {Jeffrey Hollister},
  year = {2023},
  note = {R package version 0.99.0},
  url = {https://github.com/jhollist/elevatr/},
}

@Manual{R-english,
  title = {english: Translate Integers into English},
  author = {John Fox and Bill Venables and Anthony Damico and Anne Pier Salverda},
  year = {2021},
  note = {R package version 1.2-6},
  url = {https://CRAN.R-project.org/package=english},
}

@Manual{R-exifr,
  title = {exifr: EXIF Image Data in R},
  author = {Dewey Dunnington and Phil Harvey},
  year = {2021},
  note = {R package version 0.3.2},
  url = {https://github.com/paleolimbot/exifr},
}

@Manual{R-fasstr,
  title = {fasstr: Analyze, Summarize, and Visualize Daily Streamflow Data},
  author = {Jon Goetz and Carl James Schwarz},
  year = {2024},
  note = {R package version 0.5.2},
  url = {https://bcgov.github.io/fasstr/},
}

@Manual{R-fishbc,
  title = {fishbc: Fishes of British Columbia},
  author = {Evan Amies-Galonski and Joe Thorley and Nadine Hussein},
  year = {2021},
  note = {R package version 0.2.1},
  url = {https://github.com/poissonconsulting/fishbc},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.0.0},
  url = {https://forcats.tidyverse.org/},
}

@Manual{R-fpr,
  title = {fpr: Fish Passage Data Wrangling and Reporting Functions},
  author = {Allan Irvine},
  year = {2024},
  note = {R package version 1.1.0},
  url = {https://github.com/NewGraphEnvironment/fpr},
}

@Manual{R-fs,
  title = {fs: Cross-Platform File System Operations Based on libuv},
  author = {Jim Hester and Hadley Wickham and Gábor Csárdi},
  year = {2024},
  note = {R package version 1.6.4},
  url = {https://fs.r-lib.org},
}

@Manual{R-fwapgr,
  title = {fwapgr: Client for BC Freshwater Atlas fwapg API},
  author = {Sebastian Dalgarno and Joe Thorley},
  year = {2024},
  note = {R package version 0.1.0.9015},
  url = {https://github.com/poissonconsulting/fwapgr},
}

@Manual{R-geojsonio,
  title = {geojsonio: Convert Data from and to GeoJSON or TopoJSON},
  author = {Scott Chamberlain and Andy Teucher and Michael Mahoney},
  year = {2023},
  note = {R package version 0.11.3},
  url = {https://github.com/ropensci/geojsonio},
}

@Manual{R-ggdark,
  title = {ggdark: Dark Mode for ggplot2 Themes},
  author = {Neal Grantham},
  year = {2019},
  note = {R package version 0.2.1},
  url = {https://CRAN.R-project.org/package=ggdark},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
  year = {2024},
  note = {R package version 3.5.1},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-httr,
  title = {httr: Tools for Working with URLs and HTTP},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.4.7},
  url = {https://httr.r-lib.org/},
}

@Manual{R-janitor,
  title = {janitor: Simple Tools for Examining and Cleaning Dirty Data},
  author = {Sam Firke},
  year = {2023},
  note = {R package version 2.2.0},
  url = {https://github.com/sfirke/janitor},
}

@Manual{R-jpeg,
  title = {jpeg: Read and write JPEG images},
  author = {Simon Urbanek},
  year = {2022},
  note = {R package version 0.1-10},
  url = {https://www.rforge.net/jpeg/},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2024},
  note = {R package version 1.47},
  url = {https://yihui.org/knitr/},
}

@Manual{R-leafem,
  title = {leafem: leaflet Extensions for mapview},
  author = {Tim Appelhans},
  year = {2023},
  note = {R package version 0.2.3},
  url = {https://github.com/r-spatial/leafem},
}

@Manual{R-leaflet,
  title = {leaflet: Create Interactive Web Maps with the JavaScript Leaflet
Library},
  author = {Joe Cheng and Barret Schloerke and Bhaskar Karambelkar and Yihui Xie},
  year = {2024},
  note = {R package version 2.2.2},
  url = {https://rstudio.github.io/leaflet/},
}

@Manual{R-leaflet.extras,
  title = {leaflet.extras: Extra Functionality for leaflet Package},
  author = {Sebastian Gatscha and Bhaskar Karambelkar and Barret Schloerke},
  year = {2024},
  note = {R package version 2.0.0},
  url = {https://github.com/trafficonese/leaflet.extras},
}

@Manual{R-leafpop,
  title = {leafpop: Include Tables, Images and Graphs in Leaflet Pop-Ups},
  author = {Tim Appelhans and Florian Detsch},
  year = {2021},
  note = {R package version 0.1.0},
  url = {https://github.com/r-spatial/leafpop},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2023},
  note = {R package version 1.9.3},
  url = {https://lubridate.tidyverse.org},
}

@Manual{R-magick,
  title = {magick: Advanced Graphics and Image-Processing in R},
  author = {Jeroen Ooms},
  year = {2024},
  note = {R package version 2.8.3},
  url = {https://docs.ropensci.org/magick/},
}

@Manual{R-pagedown,
  title = {pagedown: Paginate the HTML Output of R Markdown with CSS for Print},
  author = {Yihui Xie and Romain Lesur and Brent Thorne and Xianying Tan},
  year = {2022},
  note = {R package version 0.20},
  url = {https://github.com/rstudio/pagedown},
}

@Manual{R-pdftools,
  title = {pdftools: Text Extraction, Rendering and Converting of PDF Documents},
  author = {Jeroen Ooms},
  year = {2023},
  note = {R package version 3.4.0},
  url = {https://docs.ropensci.org/pdftools/},
}

@Manual{R-poisspatial,
  title = {poisspatial: Spatial Functions},
  author = {Joe Thorley and Seb Dalgarno},
  year = {2024},
  note = {R package version 0.1.0.9000},
  url = {https://github.com/poissonconsulting/poisspatial},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.2},
  url = {https://purrr.tidyverse.org/},
}

@Manual{R-raster,
  title = {raster: Geographic Data Analysis and Modeling},
  author = {Robert J. Hijmans},
  year = {2023},
  note = {R package version 3.6-26},
  url = {https://rspatial.org/raster},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2024},
  note = {R package version 2.1.5},
  url = {https://readr.tidyverse.org},
}

@Manual{R-readwritesqlite,
  title = {readwritesqlite: Enhanced Reading and Writing for SQLite Databases},
  author = {Joe Thorley},
  year = {2022},
  note = {R package version 0.2.0},
  url = {https://github.com/poissonconsulting/readwritesqlite},
}

@Manual{R-readxl,
  title = {readxl: Read Excel Files},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2023},
  note = {R package version 1.4.3},
  url = {https://readxl.tidyverse.org},
}

@Manual{R-rfp,
  title = {rfp: Reproducable Field Projects for British Columbia},
  author = {Allan Irvine},
  year = {2024},
  note = {R package version 0.0.0.9000, commit be1d720714d1d84886c07c383bf8ea77ac8f6c01},
  url = {https://github.com/newgraphenvironment/rfp},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2024},
  note = {R package version 2.27},
  url = {https://github.com/rstudio/rmarkdown},
}

@Manual{R-RPostgres,
  title = {RPostgres: C++ Interface to PostgreSQL},
  author = {Hadley Wickham and Jeroen Ooms and Kirill Müller},
  year = {2024},
  note = {R package version 1.4.7},
  url = {https://rpostgres.r-dbi.org},
}

@Manual{R-sf,
  title = {sf: Simple Features for R},
  author = {Edzer Pebesma},
  year = {2024},
  note = {R package version 1.0-16},
  url = {https://r-spatial.github.io/sf/},
}

@Manual{R-sp,
  title = {sp: Classes and Methods for Spatial Data},
  author = {Edzer Pebesma and Roger Bivand},
  year = {2024},
  note = {R package version 2.1-4},
  url = {https://github.com/edzer/sp/},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.5.1},
  url = {https://stringr.tidyverse.org},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2023},
  note = {R package version 3.2.1},
  url = {https://tibble.tidyverse.org/},
}

@Manual{R-tidyhydat,
  title = {tidyhydat: Extract and Tidy Canadian Hydrometric Data},
  author = {Sam Albers},
  year = {2024},
  note = {R package version 0.6.1},
  url = {https://docs.ropensci.org/tidyhydat/},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2024},
  note = {R package version 1.3.1},
  url = {https://tidyr.tidyverse.org},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0},
  url = {https://tidyverse.tidyverse.org},
}

@Manual{R-usethis,
  title = {usethis: Automate Package and Project Setup},
  author = {Hadley Wickham and Jennifer Bryan and Malcolm Barrett and Andy Teucher},
  year = {2024},
  note = {R package version 2.2.3},
  url = {https://usethis.r-lib.org},
}

@Article{bcdata2021,
  doi = {10.21105/joss.02927},
  year = {2021},
  publisher = {The Open Journal},
  volume = {6},
  number = {61},
  pages = {2927},
  author = {Andrew C. Teucher and Sam J. Albers and Stephanie L. Hazlitt},
  title = {bcdata: An R package for searching and retrieving data from the B.C. Data Catalogue},
  journal = {Journal of Open Source Software},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  isbn = {978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Book{sf2023,
  author = {Edzer Pebesma and Roger Bivand},
  title = {{Spatial Data Science: With applications in R}},
  year = {2023},
  publisher = {{Chapman and Hall/CRC}},
  url = {https://r-spatial.org/book/},
  doi = {10.1201/9780429459016},
}

@Article{sf2018,
  author = {Edzer Pebesma},
  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
  year = {2018},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2018-009},
  url = {https://doi.org/10.32614/RJ-2018-009},
  pages = {439--446},
  volume = {10},
  number = {1},
}

@Article{sp2005,
  author = {Edzer J. Pebesma and Roger Bivand},
  title = {Classes and methods for spatial data in {R}},
  journal = {R News},
  year = {2005},
  volume = {5},
  number = {2},
  pages = {9--13},
  month = {November},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Book{sp2013,
  author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
  title = {Applied spatial data analysis with {R}, Second edition},
  year = {2013},
  publisher = {Springer, NY},
  url = {https://asdar-book.org/},
}

@Article{tidyhydat2017,
  title = {tidyhydat: Extract and Tidy Canadian Hydrometric Data},
  author = {Sam Albers},
  doi = {10.21105/joss.00511},
  url = {http://dx.doi.org/10.21105/joss.00511},
  year = {2017},
  publisher = {The Open Journal},
  volume = {2},
  number = {20},
  journal = {The Journal of Open Source Software},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}