index.Rmd

--- 
title: "Skeena Watershed Fish Passage Restoration Planning 2023"
author: |
 |
 | Prepared for
 | Habitat Conservation Trust Foundation - CAT23-6-288
 | BC Fish Passage Remediation Program
 | Ministry of Transportation and Infrastructure
 |
 |
 | Prepared by
 | Al Irvine, B.Sc., R.P.Bio and Lucy Schick, B.Sc.
 | New Graph Environment Ltd.
 | on behalf of
 | Society for Ecosytem Restoration in Northern British Columbia

date: |
 |
 | Version 0.0.3 `r format(Sys.Date(), "%Y-%m-%d")`
toc-title: Table of Contents
site: bookdown::bookdown_site
output: 
  bookdown::gitbook:
          includes:
            in_header: header.html
            
params:
  repo_url: 'https://github.com/NewGraphEnvironment/fish_passage_skeena_2023_reporting/'
  report_url: 'https://newgraphenvironment.github.io/fish_passage_skeena_2023_reporting'
  update_packages: FALSE
  update_form_pscis: TRUE
  update_gis: FALSE
  gis_project_name: "sern_skeena_2023"
nocite: |
  @busch_etal2011LandscapeLevelModel 
  @woll_etal2017SalmonEcological,
  @kirsch_etal2014Fishinventory,
  @cooney_holzer2006AppendixInterior,
  @roberge_etal2002LifeHistory,
  @sloat_etal2017Streamnetwork,
  @woll_etal2017SalmonEcological,
  @porter_etal2008DevelopingFish,
  @rosenfeld_etal2000Habitatfactors

documentclass: book
bibliography: "`r rbbt::bbt_write_bib('references.bib', overwrite = TRUE)`"
biblio-style: apalike
link-citations: no
github-repo: github.com/NewGraphEnvironment/fish_passage_skeena_2023_reporting
description: "Skeena Fish Passage Planning 2023"
lof: FALSE


---

```{r switch-gitbook-html, echo=FALSE}
gitbook_on <- TRUE
# gitbook_on <- FALSE  ##we just need turn  this on and off to switch between gitbook and pdf via paged.js

```

```{r jquery, echo=FALSE, eval=FALSE}
#see https://github.com/NewGraphEnvironment/mybookdown-template/issues/16
htmltools::tagList(rmarkdown::html_dependency_jquery())
```


```{r setup, echo=identical(gitbook_on, TRUE), include = TRUE}
knitr::opts_chunk$set(echo=identical(gitbook_on, TRUE), message=FALSE, warning=FALSE, dpi=60, out.width = "100%")
# knitr::knit_hooks$set(webgl = hook_webgl)
options(scipen=999)
options(knitr.kable.NA = '--') #'--'
options(knitr.kable.NAN = '--')
```

```{r settings-gitbook, eval= gitbook_on}
photo_width <- "100%"
font_set <- 11

```

```{r settings-paged-html, eval= identical(gitbook_on, FALSE)}
photo_width <- "80%"
font_set <- 9
```


```{r source}
source('scripts/packages.R')
source('scripts/tables.R')
source('scripts/functions.R')


```




```{r bib, include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(), 'bookdown', 'knitr', 'rmarkdown'
), 'packages.bib')
```

# Acknowledgement {.front-matter .unnumbered}


Modern civilization has a long journey ahead to acknowledge and address the historic and ongoing impacts of colonialism that have resulted in harm to the cultures and livelihoods living interconnected with our ecosystems for many thousands of years. 

<br>

The Society for Ecosystem Restoration in Northern British Columbia recognizes the Habitat Conservation Trust Foundation, BC Fish Passage Remediation Program and Ministry of Transportation and Infrastructure for making a significant financial contributions to supporting Skeena Watershed Fish Passage Restoration Planning. Partnerships are key to conserving BC’s wildlife, fish, and their habitats.



```{js, logo-header, echo = FALSE, eval= T}
title=document.getElementById('header');
title.innerHTML = '<img src="fig/logo_sern_hctf.png" alt="NewGraph">' + title.innerHTML
```