Summarization of the technical replicate

[Laurems4ms]

Hey the FragPipe Team !
Thank you very much for this tool, it is very easy to use !
I am just wondering if i am doing well, I have two strange thing for me...
I do an DIA analysis, with median centred normalization, no imputation, Min percentage of non-missing values in at least one condition 50%. I have 3 conditions some with 1, or 2 or 3 or 4 or 5 technical replicate and other without.
The matrix that I obtained after the analysis with FragPipeAnalyst are always with technical replicates separated, I means there is no summarization of the technical replicate in the Normalized_matrix, Filtered_matrix or full_dataset.
For the limma GC it is also like that ?
Is it normal ? Or it is an issu with my experiment_annotation file ?

Also the normalized_matrix and the full_dataset show positive and negative numbers between -5 and 9...

Have you any advice ? Thank you very much for your help !

Laure.