Criteria for absence/presence table

[RaquelIQS]

Hi

Where can I find the inclusion/exclusion criteria for proteins that lead to the absence/presence table?

Thank you

Raquel

[hsiaoyi0504]

@RaquelIQS Can you elaborate a bit what's your question? It's based on the filters you defined on the left hand side menu.

[RaquelIQS]

Yes! Of course. In the Absence/Presence tab, there is a downloadable table called 'Filtered Table.' However, in the 'Filtered Options,' I only see an option to apply a filter for proteins with more than two peptides. Is this the only filter used as a criterion for excluding proteins, or are there additional filters? Are spectral counts, coverage, or protein probability considered as additional criteria for filtering proteins, or is the 'more than two peptides' filter the only one applied? Thank you very much for the attention!

Raquel

[hsiaoyi0504]

@RaquelIQS Sorry for late reply. Currently, that's the only criteria, but we could add more if you have some suggestion.