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PLINK2 software problem #53

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Akki-akki opened this issue Dec 27, 2023 · 0 comments
Open

PLINK2 software problem #53

Akki-akki opened this issue Dec 27, 2023 · 0 comments

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@Akki-akki
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Dear all:
There is a tough problem for me: I want to merge all imputed_data and INFO data that given from UKBB. but i fail to merge, can somebody tell me that's wrong with my code or do you have other idea about how to merge it?
my code in below:
plink2 --bgen /disk/disk1/UKB/Gene/Imputation/ukb_imp_chr${chr}_v3.bgen 'ref-first' --sample /disk/disk1/UKB/Gene/Imputation/sampleID.sample --extract-col-cond ukb_mfi_chr${chr}_v3.txt 8 2 --extract-col-cond-min 0.5 --make-pgen --out out

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