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1611074845.880089 Tue Jan 19 09:47:25 2021 0.000 0.000 starting
rm -rf in_list afile phostone stf_01 f_ex02 c_ex02 mpigpu *mod slowinvert hysub.o purempi build invertc
rm -rf ../in_list ../afile ../phostone ../stf_01 ../f_ex02 ../c_ex02 ../mpigpu ../doarray.py ../report.py ../tymer ../slowinvert ../purempi ../invertc
source $MODULESHOME/init/bash ; ml mpt mkl cuda gcc/8.4.0 ; make -f makefile programs
make[1]: Entering directory `/lustre/eaglefs/scratch/tkaiser2/collect2/HPC/slurm/source'
mpicc -fopenmp phostone.c -o phostone
mpif90 stf_01.f90 -o stf_01
mpif90 f_ex02.f90 -o f_ex02
mpicc c_ex02.c -o c_ex02
nvcc -c hysub.cu
mpicc hymain.c hysub.o -lcudart -lstdc++ -o mpigpu
ifort -mkl -O3 -fopenmp slowinvert.f90 -o slowinvert
mpicc -DSTUBS phostone.c -o purempi
echo line1 > afile
echo line2 >> afile
gcc -fopenmp invertc.c -o invertc
./doarray.py
created in_list
Normal USAGE:
./doarray.py account
make[1]: Leaving directory `/lustre/eaglefs/scratch/tkaiser2/collect2/HPC/slurm/source'
cp in_list afile phostone stf_01 f_ex02 c_ex02 mpigpu doarray.py report.py slowinvert tymer purempi invertc ..
rm -rf in_list afile phostone stf_01 f_ex02 c_ex02 mpigpu *mod slowinvert hysub.o purempi build invertc
1611074851.569341 Tue Jan 19 09:47:31 2021 5.689 5.689 did install
+++++++++++++
1611074853.618656 Tue Jan 19 09:47:33 2021 2.049 7.739 finished NONE
1611074853.647886 Tue Jan 19 09:47:33 2021 0.029 7.768 submitting hostname.sh
+++++++++++++
Submitted batch job 5709905
5709905 debug hostname tkaiser2 CG 0:04 2 r103u[21,23]
job in queue
+++++++++++++
1611074868.727621 Tue Jan 19 09:47:48 2021 15.080 22.848 finished hostname.sh
./slurm-5709905.out
1611074868.756096 Tue Jan 19 09:47:48 2021 0.028 22.876 submitting multinode-task-per-core.sh
+++++++++++++
Submitted batch job 5709906
5709906 debug node_rol tkaiser2 R 0:05 2 r103u[21,23]
job in queue
5709906 debug node_rol tkaiser2 CG 0:12 2 r103u[21,23]
job in queue
+++++++++++++
1611074897.183949 Tue Jan 19 09:48:17 2021 28.428 51.304 finished multinode-task-per-core.sh
./node_rollcall.5709906
1611074897.213245 Tue Jan 19 09:48:17 2021 0.029 51.333 submitting openmp.sh
+++++++++++++
Submitted batch job 5709907
5709907 debug sample tkaiser2 PD 0:00 1 (None)
job in queue
5709907 debug sample tkaiser2 PD 0:00 1 (None)
job in queue
5709907 debug sample tkaiser2 R 0:08 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 0:18 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 0:28 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 0:38 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 0:48 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 0:58 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:08 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:18 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:28 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:38 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:48 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 1:58 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 2:10 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 2:20 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 2:30 1 r1i7n35
job in queue
5709907 debug sample tkaiser2 R 2:40 1 r1i7n35
job in queue
+++++++++++++
1611075084.367297 Tue Jan 19 09:51:24 2021 187.154 238.487 finished openmp.sh
./5709907.36.scatter
./5709907.out
./5709907.18.scatter
./5709907.18.spread
./5709907.36.spread
./5709907.err
1611075084.398086 Tue Jan 19 09:51:24 2021 0.031 238.518 submitting simple.sh
+++++++++++++
Submitted batch job 5709914
5709914 debug sample tkaiser2 PD 0:00 2 (None)
job in queue
5709914 debug sample tkaiser2 R 0:07 2 r102u[34-35]
job in queue
5709914 debug sample tkaiser2 R 0:18 2 r102u[34-35]
job in queue
5709914 debug sample tkaiser2 CG 0:25 2 r102u[34-35]
job in queue
+++++++++++++
1611075131.058050 Tue Jan 19 09:52:11 2021 46.660 285.178 finished simple.sh
./5709914.err
./5709914.out
./5709914.stdout
1611075131.087025 Tue Jan 19 09:52:11 2021 0.029 285.207 submitting hybrid.sh
+++++++++++++
Submitted batch job 5709915
5709915 debug sample tkaiser2 R 0:04 2 r102u[34-35]
job in queue
5709915 debug sample tkaiser2 R 0:14 2 r102u[34-35]
job in queue
5709915 debug sample tkaiser2 R 0:24 2 r102u[34-35]
job in queue
5709915 debug sample tkaiser2 CG 0:35 2 r102u[34-35]
job in queue
+++++++++++++
1611075177.586673 Tue Jan 19 09:52:57 2021 46.500 331.707 finished hybrid.sh
./5709915.4
./5709915.1
./5709915.9
./5709915.err
./5709915.out
1611075177.617959 Tue Jan 19 09:52:57 2021 0.031 331.738 submitting affinity.sh
+++++++++++++
Submitted batch job 5709918
5709918 debug sample tkaiser2 R 0:02 1 r1i7n35
job in queue
5709918 debug sample tkaiser2 R 0:12 1 r1i7n35
job in queue
5709918 debug sample tkaiser2 R 0:22 1 r1i7n35
job in queue
5709918 debug sample tkaiser2 R 0:32 1 r1i7n35
job in queue
5709918 debug sample tkaiser2 CG 0:40 1 r1i7n35
job in queue
+++++++++++++
1611075232.779861 Tue Jan 19 09:53:52 2021 55.162 386.900 finished affinity.sh
./5709918.compact
./5709918.scatter
./5709918.out
./5709918.err
./5709918.noaffinity
1611075232.811977 Tue Jan 19 09:53:52 2021 0.032 386.932 submitting newdir.sh
+++++++++++++
Submitted batch job 5709919
5709919 debug hybrid tkaiser2 R 0:02 2 r102u[34-35]
job in queue
+++++++++++++
1611075247.932922 Tue Jan 19 09:54:07 2021 15.121 402.053 finished newdir.sh
./slurm-5709919.out
./5709919/slurm-5709919.out
./5709919/env.5709919
./5709919/script.5709919
./5709919/nodes.5709919
./5709919/stf_01
1611075247.964461 Tue Jan 19 09:54:07 2021 0.032 402.084 submitting fromenv.sh
+++++++++++++
Submitted batch job 5709920
5709920 debug sample tkaiser2 PD 0:00 1 (None)
job in queue
+++++++++++++
1611075263.045890 Tue Jan 19 09:54:23 2021 15.081 417.166 finished fromenv.sh
./5709920.out
./5709920.err
1611075263.082706 Tue Jan 19 09:54:23 2021 0.037 417.203 submitting mpmd.sh
+++++++++++++
Submitted batch job 5709921
5709921 debug sample tkaiser2 PD 0:00 1 (None)
job in queue
5709921 debug sample tkaiser2 CG 0:04 1 r1i7n35
job in queue
+++++++++++++
1611075289.484172 Tue Jan 19 09:54:49 2021 26.401 443.604 finished mpmd.sh
./5709921.out
./5709921.err
./used_mpiexec
./mapfile
./used_mapfile
1611075289.517075 Tue Jan 19 09:54:49 2021 0.033 443.637 submitting mpmd2.sh
+++++++++++++
Submitted batch job 5709922
5709922 debug sample tkaiser2 R 0:03 2 r102u[34-35]
job in queue
5709922 debug sample tkaiser2 CG 0:08 1 r102u34
job in queue
+++++++++++++
1611075317.111701 Tue Jan 19 09:55:17 2021 27.595 471.232 finished mpmd2.sh
./hostlist
./5709922.err
./config_file
./.README.md.swp
./5709922.out
1611075317.143611 Tue Jan 19 09:55:17 2021 0.032 471.264 submitting multi.sh
+++++++++++++
Submitted batch job 5709923
5709923 debug two tkaiser2 PD 0:00 1 (None)
job in queue
5709923 debug two tkaiser2 PD 0:00 1 (None)
job in queue
5709923 debug two tkaiser2 R 0:09 1 r1i7n35
job in queue
5709923 debug two tkaiser2 R 0:19 1 r1i7n35
job in queue
5709923 debug two tkaiser2 R 0:29 1 r1i7n35
job in queue
5709923 debug two tkaiser2 R 0:39 1 r1i7n35
job in queue
5709923 debug two tkaiser2 R 0:49 1 r1i7n35
job in queue
5709923 debug two tkaiser2 R 0:59 1 r1i7n35
job in queue
5709923 debug two tkaiser2 CG 1:07 1 r1i7n35
job in queue
+++++++++++++
1611075412.716225 Tue Jan 19 09:56:52 2021 95.573 566.836 finished multi.sh
./5709923.run2
./slurm-5709923.out
./5709923.10
./5709923.15
./5709923.run1
./.README.md.swp
./5709923.5
./mytimes
1611075412.748901 Tue Jan 19 09:56:52 2021 0.033 566.869 submitting gpucpu.sh
+++++++++++++
Submitted batch job 5709925
5709925 debug sample tkaiser2 R 0:02 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 0:12 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 0:22 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 0:32 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 0:42 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 0:53 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 1:03 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 1:13 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 1:23 1 r103u21
job in queue
5709925 debug sample tkaiser2 R 1:33 1 r103u21
job in queue
+++++++++++++
1611075519.931399 Tue Jan 19 09:58:39 2021 107.182 674.051 finished gpucpu.sh
./5709925.err
./README.md
./5709925/six.out
./5709925/mpigpu.out
./5709925/script
./5709925.out
1611075519.979037 Tue Jan 19 09:58:39 2021 0.048 674.099 submitting CHAIN.sh
+++++++++++++
5709928
5709929
5709930
5709931
5709932
5709928 short atest tkaiser2 PD 0:00 1 (None)
5709929 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709928 short atest tkaiser2 PD 0:00 1 (None)
5709929 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709929 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709928 short atest tkaiser2 R 0:08 1 r104u21
job in queue
5709928 short atest tkaiser2 CG 0:17 1 r104u21
5709929 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709929 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709929 short atest tkaiser2 R 0:05 1 r3i3n29
job in queue
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709929 short atest tkaiser2 R 0:15 1 r3i3n29
job in queue
5709929 short atest tkaiser2 CG 0:23 1 r3i3n29
5709930 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709930 short atest tkaiser2 R 0:07 1 r3i3n29
job in queue
5709930 short atest tkaiser2 CG 0:15 1 r3i3n29
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709931 short atest tkaiser2 PD 0:00 1 (Dependency)
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 R 0:08 1 r5i7n33
job in queue
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
5709931 short atest tkaiser2 R 0:18 1 r5i7n33
job in queue
5709931 short atest tkaiser2 CG 0:26 1 r5i7n33
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709932 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709932 short atest tkaiser2 R 0:07 1 r4i3n19
job in queue
5709932 short atest tkaiser2 CG 0:16 1 r4i3n19
job in queue
+++++++++++++
1611075701.608329 Tue Jan 19 10:01:41 2021 181.629 855.728 finished CHAIN.sh
./job3/5709928.out
./job3/5709930.out
./job3/5709929.out
./stderr.5709932
./job1/5709928.out
./stdout.5709930
./stdout.5709928
./job4/5709931.out
./job4/5709928.out
./job4/5709930.out
./job4/5709929.out
./stderr.5709930
./job5/5709931.out
./job5/5709928.out
./job5/5709930.out
./job5/5709932.out
./job5/5709929.out
./stderr.5709928
./job2/5709928.out
./job2/5709929.out
./stdout.5709929
./stdout.5709932
./stderr.5709929
./stdout.5709931
./stderr.5709931
1611075701.649843 Tue Jan 19 10:01:41 2021 0.042 855.770 submitting FAN.sh
+++++++++++++
Starts with 5 jobs that need to run in sequence.
5709935
--dependency=afterok:5709935
5709936
--dependency=afterok:5709936
5709937
--dependency=afterok:5709937
5709938
--dependency=afterok:5709938
5709939
afterok:5709936,afterok:5709937,afterok:5709938,afterok:5709939
Now 4 jobs that will wait for the previous 5,
however, these are independent of each other.
--dependency=afterok:5709936,afterok:5709937,afterok:5709938,afterok:5709939
5709940
--dependency=afterok:5709936,afterok:5709937,afterok:5709938,afterok:5709939
5709941
--dependency=afterok:5709936,afterok:5709937,afterok:5709938,afterok:5709939
5709942
--dependency=afterok:5709936,afterok:5709937,afterok:5709938,afterok:5709939
5709943
afterok:5709940,afterok:5709941,afterok:5709942,afterok:5709943
Finally a single job that waits for the previous 4
5709940 5709941 5709942 5709943
5709944
+-+-+- REPORT OF PENDING JOB DEPENDECIES +-+-+-
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
5709935 short atest tkaiser2 PD 0:00 1 (None)
5709936 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job 5709935
JobState=PENDING Reason=None Dependency=(null)
job 5709936
JobState=PENDING Reason=Dependency Dependency=afterok:5709935(unfulfilled)
job 5709937
JobState=PENDING Reason=Dependency Dependency=afterok:5709936(unfulfilled)
job 5709938
JobState=PENDING Reason=Dependency Dependency=afterok:5709937(unfulfilled)
job 5709939
JobState=PENDING Reason=Dependency Dependency=afterok:5709938(unfulfilled)
job 5709940
JobState=PENDING Reason=Dependency Dependency=afterok:5709936(unfulfilled),afterok:5709937(unfulfilled),afterok:5709938(unfulfilled),afterok:5709939(unfulfilled)
job 5709941
JobState=PENDING Reason=Dependency Dependency=afterok:5709936(unfulfilled),afterok:5709937(unfulfilled),afterok:5709938(unfulfilled),afterok:5709939(unfulfilled)
job 5709942
JobState=PENDING Reason=Dependency Dependency=afterok:5709936(unfulfilled),afterok:5709937(unfulfilled),afterok:5709938(unfulfilled),afterok:5709939(unfulfilled)
job 5709943
JobState=PENDING Reason=Dependency Dependency=afterok:5709936(unfulfilled),afterok:5709937(unfulfilled),afterok:5709938(unfulfilled),afterok:5709939(unfulfilled)
job 5709944
JobState=PENDING Reason=Dependency Dependency=afterok:5709940(unfulfilled),afterok:5709941(unfulfilled),afterok:5709942(unfulfilled),afterok:5709943(unfulfilled)
5709935 short atest tkaiser2 PD 0:00 1 (None)
5709936 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709936 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709935 short atest tkaiser2 R 0:03 1 r4i3n19
job in queue
5709936 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709935 short atest tkaiser2 R 0:13 1 r4i3n19
job in queue
5709936 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709936 short atest tkaiser2 R 0:05 1 r4i3n19
job in queue
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709936 short atest tkaiser2 R 0:15 1 r4i3n19
job in queue
5709936 short atest tkaiser2 CG 0:22 1 r4i3n19
5709937 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709937 short atest tkaiser2 CF 0:00 1 r4i3n19
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709937 short atest tkaiser2 R 0:10 1 r4i3n19
job in queue
5709938 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 R 0:07 1 r4i3n19
job in queue
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709938 short atest tkaiser2 R 0:17 1 r4i3n19
job in queue
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709939 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709939 short atest tkaiser2 CF 0:02 1 r4i3n19
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709939 short atest tkaiser2 R 0:12 1 r4i3n19
job in queue
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709940 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 PD 0:00 1 (Dependency)
5709942 short atest tkaiser2 PD 0:00 1 (Dependency)
5709943 short atest tkaiser2 PD 0:00 1 (Dependency)
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709940 short atest tkaiser2 CF 0:02 1 r3i4n22
5709943 short atest tkaiser2 CF 0:02 1 r104u25
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709941 short atest tkaiser2 R 0:02 1 r4i3n19
5709942 short atest tkaiser2 R 0:02 1 r104u21
job in queue
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
5709940 short atest tkaiser2 R 0:12 1 r3i4n22
5709941 short atest tkaiser2 R 0:12 1 r4i3n19
5709942 short atest tkaiser2 R 0:12 1 r104u21
5709943 short atest tkaiser2 R 0:12 1 r104u25
job in queue
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709944 short atest tkaiser2 PD 0:00 1 (Dependency)
job in queue
5709944 short atest tkaiser2 R 0:04 1 r3i4n22
job in queue
5709944 short atest tkaiser2 R 0:14 1 r3i4n22
job in queue
+++++++++++++
1611075998.848123 Tue Jan 19 10:06:38 2021 297.198 1152.968 finished FAN.sh
./stdout.5709937
./ser4/5709936.out
./ser4/5709935.out
./ser4/5709938.out
./ser4/5709937.out
./stdout.5709944
./stderr.5709943
./stdout.5709942
./stdout.5709936
./final/5709940.out
./final/5709942.out
./final/5709941.out
./final/5709943.out
./final/5709944.out
./stdout.5709941
./stdout.5709938
./par2/5709939.out
./par2/5709936.out
./par2/5709935.out
./par2/5709938.out
./par2/5709937.out
./par2/5709941.out
./stderr.5709944
./stderr.5709940
./stderr.5709938
./par1/5709939.out
./par1/5709940.out
./par1/5709936.out
./par1/5709935.out
./par1/5709938.out
./par1/5709937.out
./ser1/5709935.out
./stdout.5709939
./ser3/5709936.out
./ser3/5709935.out
./ser3/5709937.out
./stdout.5709940
./stderr.5709942
./par4/5709939.out
./par4/5709936.out
./par4/5709935.out
./par4/5709938.out
./par4/5709937.out
./par4/5709943.out
./stdout.5709943
./stderr.5709936
./ser2/5709936.out
./ser2/5709935.out
./par3/5709939.out
./par3/5709936.out
./par3/5709935.out
./par3/5709938.out
./par3/5709942.out
./par3/5709937.out
./stderr.5709941
./stderr.5709935
./stderr.5709937
./stdout.5709935
./stderr.5709939
./ser5/5709939.out
./ser5/5709936.out
./ser5/5709935.out
./ser5/5709938.out
./ser5/5709937.out
1611075998.902660 Tue Jan 19 10:06:38 2021 0.055 1153.023 submitting uselist.sh
+++++++++++++
created in_list
COMMAND:
sbatch -A hpcapps --array=1-24 uselist.sh
Submitted batch job 5709946
5709946_[1-24] short array_jo tkaiser2 PD 0:00 1 (None)
job in queue
5709946_[1-24] short array_jo tkaiser2 PD 0:00 1 (None)
job in queue
5709946_[8-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
5709946_1 short array_jo tkaiser2 R 0:05 1 r3i4n22
5709946_2 short array_jo tkaiser2 R 0:05 1 r4i3n19
5709946_3 short array_jo tkaiser2 R 0:05 1 r104u21
5709946_4 short array_jo tkaiser2 R 0:05 1 r104u25
5709946_5 short array_jo tkaiser2 R 0:05 1 r104u27
5709946_6 short array_jo tkaiser2 R 0:05 1 r104u29
5709946_7 short array_jo tkaiser2 R 0:05 1 r104u31
job in queue
5709946_11 short array_jo tkaiser2 CF 0:02 1 r104u29
5709946_12 short array_jo tkaiser2 CF 0:02 1 r104u31
5709946_[13-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
5709946_9 short array_jo tkaiser2 R 0:02 1 r104u25
5709946_10 short array_jo tkaiser2 R 0:02 1 r104u27
5709946_8 short array_jo tkaiser2 R 0:03 1 r104u21
job in queue
5709946_[13-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
job in queue
5709946_[18-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
5709946_13 short array_jo tkaiser2 R 0:09 1 r104u21
5709946_14 short array_jo tkaiser2 R 0:09 1 r104u25
5709946_15 short array_jo tkaiser2 R 0:09 1 r104u27
5709946_16 short array_jo tkaiser2 R 0:09 1 r104u29
5709946_17 short array_jo tkaiser2 R 0:09 1 r104u31
job in queue
5709946_[18-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
job in queue
5709946_[18-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
job in queue
5709946_[18-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
job in queue
5709946_[23-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
5709946_18 short array_jo tkaiser2 R 0:05 1 r104u21
5709946_19 short array_jo tkaiser2 R 0:05 1 r104u25
5709946_20 short array_jo tkaiser2 R 0:05 1 r104u27
5709946_21 short array_jo tkaiser2 R 0:05 1 r104u29
5709946_22 short array_jo tkaiser2 R 0:05 1 r104u31
job in queue
5709946_[23-24] short array_jo tkaiser2 PD 0:00 1 (Resources)
job in queue
5709946_23 short array_jo tkaiser2 CG 0:10 1 r104u21
5709946_24 short array_jo tkaiser2 CG 0:10 1 r104u25
job in queue
+++++++++++++
1611076128.186164 Tue Jan 19 10:08:48 2021 129.284 1282.306 finished uselist.sh
./5709946/19/input
./5709946/19/myscript
./5709946/19/envs
./5709946/19/timer
./5709946/19/node
./5709946/19/output
./5709946/7/input
./5709946/7/myscript
./5709946/7/envs
./5709946/7/timer
./5709946/7/node
./5709946/7/output
./5709946/14/input
./5709946/14/myscript
./5709946/14/envs
./5709946/14/timer
./5709946/14/node
./5709946/14/output
./5709946/2/input
./5709946/2/myscript
./5709946/2/envs
./5709946/2/timer
./5709946/2/node
./5709946/2/output
./5709946/17/input
./5709946/17/myscript
./5709946/17/envs
./5709946/17/timer
./5709946/17/node
./5709946/17/output
./5709946/3/input
./5709946/3/myscript
./5709946/3/envs
./5709946/3/timer
./5709946/3/node
./5709946/3/output
./5709946/4/input
./5709946/4/myscript
./5709946/4/envs
./5709946/4/timer
./5709946/4/node
./5709946/4/output
./5709946/23/input
./5709946/23/myscript
./5709946/23/envs
./5709946/23/timer
./5709946/23/node
./5709946/23/output
./5709946/20/input
./5709946/20/myscript
./5709946/20/envs
./5709946/20/timer
./5709946/20/node
./5709946/20/output
./5709946/21/input
./5709946/21/myscript
./5709946/21/envs
./5709946/21/timer
./5709946/21/node
./5709946/21/output
./5709946/12/input
./5709946/12/myscript
./5709946/12/envs
./5709946/12/timer
./5709946/12/node
./5709946/12/output
./5709946/1/input
./5709946/1/myscript
./5709946/1/envs
./5709946/1/timer
./5709946/1/node
./5709946/1/output
./5709946/6/input
./5709946/6/myscript
./5709946/6/envs
./5709946/6/timer
./5709946/6/node
./5709946/6/output
./5709946/24/input
./5709946/24/myscript
./5709946/24/envs
./5709946/24/timer
./5709946/24/node
./5709946/24/output
./5709946/15/input
./5709946/15/myscript
./5709946/15/envs
./5709946/15/timer
./5709946/15/node
./5709946/15/output
./5709946/5/input
./5709946/5/myscript
./5709946/5/envs
./5709946/5/timer
./5709946/5/node
./5709946/5/output
./5709946/16/input
./5709946/16/myscript
./5709946/16/envs
./5709946/16/timer
./5709946/16/node
./5709946/16/output
./5709946/10/input
./5709946/10/myscript
./5709946/10/envs
./5709946/10/timer
./5709946/10/node
./5709946/10/output
./5709946/18/input
./5709946/18/myscript
./5709946/18/envs
./5709946/18/timer
./5709946/18/node
./5709946/18/output
./5709946/8/input
./5709946/8/myscript
./5709946/8/envs
./5709946/8/timer
./5709946/8/node
./5709946/8/output
./5709946/22/input
./5709946/22/myscript
./5709946/22/envs
./5709946/22/timer
./5709946/22/node
./5709946/22/output
./5709946/13/input
./5709946/13/myscript
./5709946/13/envs
./5709946/13/timer
./5709946/13/node
./5709946/13/output
./5709946/11/input
./5709946/11/myscript
./5709946/11/envs
./5709946/11/timer
./5709946/11/node
./5709946/11/output
./5709946/9/input
./5709946/9/myscript
./5709946/9/envs
./5709946/9/timer
./5709946/9/node
./5709946/9/output
1611076128.271237 Tue Jan 19 10:08:48 2021 0.085 1282.391 submitting redirect.sh
+++++++++++++
Submitted batch job 5709970
5709970 debug atest tkaiser2 PD 0:00 1 (None)
job in queue
5709970 debug atest tkaiser2 R 0:04 1 r1i7n35
job in queue
5709970 debug atest tkaiser2 R 0:14 1 r1i7n35
job in queue
5709970 debug atest tkaiser2 R 0:24 1 r1i7n35
job in queue
+++++++++++++
1611076175.065783 Tue Jan 19 10:09:35 2021 46.795 1329.186 finished redirect.sh
./myout.5709970
./stderr.5709970
./stdout.5709970
1611076175.125808 Tue Jan 19 10:09:35 2021 0.060 1329.246 submitting multimax.sh
+++++++++++++
Submitted batch job 5709971
5709971 debug mpi4py tkaiser2 R 0:03 2 r103u[21,23]
job in queue
5709971 debug mpi4py tkaiser2 R 0:13 2 r103u[21,23]
job in queue
5709971 debug mpi4py tkaiser2 R 0:23 2 r103u[21,23]
job in queue
5709971 debug mpi4py tkaiser2 R 0:33 2 r103u[21,23]
job in queue
+++++++++++++
1611076220.289303 Tue Jan 19 10:10:20 2021 45.163 1374.409 finished multimax.sh
./run2
./slurm-5709971.out
./run0
./10_r103u21
./run1
./11_r103u21
./run3
./11_r103u23
./10_r103u23
1611076220.347506 Tue Jan 19 10:10:20 2021 0.058 1374.467 submitting local.sh
+++++++++++++
Submitted batch job 5709973
1611076225.411072 Tue Jan 19 10:10:25 2021 5.064 1379.531 done launching all jobs
5709973 debug local tkaiser2 R 0:08 2 r103u[21,23]
job in queue
5709973 debug local tkaiser2 R 0:18 2 r103u[21,23]
job in queue
5709973 debug local tkaiser2 CG 0:27 2 r103u[21,23]
job in queue
1611076258.446627 Tue Jan 19 10:10:58 2021 33.036 1412.567 all jobss finished
./5709973/r103u21/afile
./5709973/r103u21/script.5709973
./5709973/slurm-5709973.out
./5709973/script.5709973
./5709973/r103u23/afile
./5709973/r103u23/script.5709973
./slurm-5709973.out
TIMINGS:
1611074845.880089 Tue Jan 19 09:47:25 2021 0.000 0.000 starting
1611074851.569341 Tue Jan 19 09:47:31 2021 5.689 5.689 did install
1611074853.618656 Tue Jan 19 09:47:33 2021 2.049 7.739 finished NONE
1611074853.647886 Tue Jan 19 09:47:33 2021 0.029 7.768 submitting hostname.sh
1611074868.727621 Tue Jan 19 09:47:48 2021 15.080 22.848 finished hostname.sh
1611074868.756096 Tue Jan 19 09:47:48 2021 0.028 22.876 submitting multinode-task-per-core.sh
1611074897.183949 Tue Jan 19 09:48:17 2021 28.428 51.304 finished multinode-task-per-core.sh
1611074897.213245 Tue Jan 19 09:48:17 2021 0.029 51.333 submitting openmp.sh
1611075084.367297 Tue Jan 19 09:51:24 2021 187.154 238.487 finished openmp.sh
1611075084.398086 Tue Jan 19 09:51:24 2021 0.031 238.518 submitting simple.sh
1611075131.058050 Tue Jan 19 09:52:11 2021 46.660 285.178 finished simple.sh
1611075131.087025 Tue Jan 19 09:52:11 2021 0.029 285.207 submitting hybrid.sh
1611075177.586673 Tue Jan 19 09:52:57 2021 46.500 331.707 finished hybrid.sh
1611075177.617959 Tue Jan 19 09:52:57 2021 0.031 331.738 submitting affinity.sh
1611075232.779861 Tue Jan 19 09:53:52 2021 55.162 386.900 finished affinity.sh
1611075232.811977 Tue Jan 19 09:53:52 2021 0.032 386.932 submitting newdir.sh
1611075247.932922 Tue Jan 19 09:54:07 2021 15.121 402.053 finished newdir.sh
1611075247.964461 Tue Jan 19 09:54:07 2021 0.032 402.084 submitting fromenv.sh
1611075263.045890 Tue Jan 19 09:54:23 2021 15.081 417.166 finished fromenv.sh
1611075263.082706 Tue Jan 19 09:54:23 2021 0.037 417.203 submitting mpmd.sh
1611075289.484172 Tue Jan 19 09:54:49 2021 26.401 443.604 finished mpmd.sh
1611075289.517075 Tue Jan 19 09:54:49 2021 0.033 443.637 submitting mpmd2.sh
1611075317.111701 Tue Jan 19 09:55:17 2021 27.595 471.232 finished mpmd2.sh
1611075317.143611 Tue Jan 19 09:55:17 2021 0.032 471.264 submitting multi.sh
1611075412.716225 Tue Jan 19 09:56:52 2021 95.573 566.836 finished multi.sh
1611075412.748901 Tue Jan 19 09:56:52 2021 0.033 566.869 submitting gpucpu.sh
1611075519.931399 Tue Jan 19 09:58:39 2021 107.182 674.051 finished gpucpu.sh
1611075519.979037 Tue Jan 19 09:58:39 2021 0.048 674.099 submitting CHAIN.sh
1611075701.608329 Tue Jan 19 10:01:41 2021 181.629 855.728 finished CHAIN.sh
1611075701.649843 Tue Jan 19 10:01:41 2021 0.042 855.770 submitting FAN.sh
1611075998.848123 Tue Jan 19 10:06:38 2021 297.198 1152.968 finished FAN.sh
1611075998.902660 Tue Jan 19 10:06:38 2021 0.055 1153.023 submitting uselist.sh
1611076128.186164 Tue Jan 19 10:08:48 2021 129.284 1282.306 finished uselist.sh
1611076128.271237 Tue Jan 19 10:08:48 2021 0.085 1282.391 submitting redirect.sh
1611076175.065783 Tue Jan 19 10:09:35 2021 46.795 1329.186 finished redirect.sh
1611076175.125808 Tue Jan 19 10:09:35 2021 0.060 1329.246 submitting multimax.sh
1611076220.289303 Tue Jan 19 10:10:20 2021 45.163 1374.409 finished multimax.sh
1611076220.347506 Tue Jan 19 10:10:20 2021 0.058 1374.467 submitting local.sh
1611076225.411072 Tue Jan 19 10:10:25 2021 5.064 1379.531 done launching all jobs
1611076258.446627 Tue Jan 19 10:10:58 2021 33.036 1412.567 all jobss finished
To clean up run this...
cd source ; make dist-clean ; cd
Then remove the following files.
There will be a list in "newfiles"
-rw-rw----. 1 tkaiser2 tkaiser2 3416 Jan 19 10:10 ./record
-rw-rw----. 1 tkaiser2 tkaiser2 835 Jan 19 10:10 ./5709973/slurm-5709973.out
-rw-rw----. 1 tkaiser2 tkaiser2 835 Jan 19 10:10 ./slurm-5709973.out
-rw-rw----. 1 tkaiser2 tkaiser2 1048576 Jan 19 10:10 ./5709973/r103u23/afile
-rw-rw----. 1 tkaiser2 tkaiser2 3802 Jan 19 10:10 ./5709973/r103u23/script.5709973
-rw-rw----. 1 tkaiser2 tkaiser2 1048576 Jan 19 10:10 ./5709973/r103u21/afile
-rw-rw----. 1 tkaiser2 tkaiser2 3802 Jan 19 10:10 ./5709973/r103u21/script.5709973
-rw-rw----. 1 tkaiser2 tkaiser2 3802 Jan 19 10:10 ./5709973/script.5709973
-rw-rw----. 1 tkaiser2 tkaiser2 258 Jan 19 10:10 ./run0
-rw-rw----. 1 tkaiser2 tkaiser2 258 Jan 19 10:10 ./run1
-rw-rw----. 1 tkaiser2 tkaiser2 258 Jan 19 10:10 ./run2
-rw-rw----. 1 tkaiser2 tkaiser2 258 Jan 19 10:10 ./run3
-rw-rw----. 1 tkaiser2 tkaiser2 3988 Jan 19 10:10 ./slurm-5709971.out
-rw-rw----. 1 tkaiser2 tkaiser2 875 Jan 19 10:10 ./11_r103u21
-rw-rw----. 1 tkaiser2 tkaiser2 875 Jan 19 10:10 ./11_r103u23
-rw-rw----. 1 tkaiser2 tkaiser2 875 Jan 19 10:10 ./10_r103u21
-rw-rw----. 1 tkaiser2 tkaiser2 875 Jan 19 10:10 ./10_r103u23
-rw-rw----. 1 tkaiser2 tkaiser2 1221 Jan 19 10:09 ./myout.5709970
-rw-rw----. 1 tkaiser2 tkaiser2 0 Jan 19 10:09 ./stderr.5709970
-rw-rw----. 1 tkaiser2 tkaiser2 0 Jan 19 10:09 ./stdout.5709970
-rw-rw----. 1 tkaiser2 tkaiser2 8 Jan 19 10:08 ./5709946/23/node