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diff --git a/docs/_sources/common/developer_manual/architecture/desktop/architecture.rst.txt b/docs/_sources/common/developer_manual/architecture/desktop/architecture.rst.txt
index 88ffb575..ce3e93bf 100644
--- a/docs/_sources/common/developer_manual/architecture/desktop/architecture.rst.txt
+++ b/docs/_sources/common/developer_manual/architecture/desktop/architecture.rst.txt
@@ -13,29 +13,6 @@ The |app| is one of the SimCenter's computational applications, which are `scien
    - a modular framework that allows developers to incorporate their own software applications as components to the workflow system, so long as it meets the input-output structure at component interfaces.
 
 
-Documentation of the software architecture is detailed in the following pages:
-
-
-.. toctree-filt::
-   :maxdepth: 1
-
-   file-types.rst
-   backendApplications.rst
-   :R2D:workflows
-   :R2D:run-manually
-   :notQuoFEM:c4model
-
-#. DL: application to determine the damage and loss to the building/infrastructure given the event.
-
-#. EDP: application to determine the response parameter given the event, building/lifeline, and damage and loss application.
-
-#. BRAILS: a framework of applications for creating regional-level building inventories using machine learning.   
-
-#. Databases containing information on building inventories for regional simulations, consequence functions for the DL applications, and experimental and corresponding simulation models for future machine learning-based AI algorithms.
-
- Within the natural hazards engineering community, there exist several widely used open-source applications, e.g., OpenFOAM, and online datasets, e.g., PEER NGA, that researchers are currently using. Consequently, and to avoid duplication, SimCenter applications incorporate many widely used applications, e.g., OpenFOAM. To do this, SimCenter develops pre- and post-processors for these existing applications and utilizes web technologies for accessing online services.
-
-   
 .. _figFramework:
 
 .. figure:: figures/SimCenterFramework.png
@@ -54,134 +31,40 @@ The SimCenter scientific workflow systems aim to facilitate the use, reuse, and
 
 The following sections present the architecture of SimCenter the SimCenter to level 3:
 
-.. note:: **Definitions**
-
-   #. **Workflow**: “The automation of a business process, in whole or part, during which documents, information or tasks are passed from one participant to another for action, according to a set of procedural rules.” [Workflow Management Coalition].
-
-   #. **Application**: A software application performs operations on data residing in a computer for a user or another program; it can be self-contained, typically termed a program or part of a group of programs.
-
-   #. **Scientific Workflow**: A sequence of steps propagating input data through various applications to produce output. It is a loosely coupled application performing workflows in which each coordinated task is performed using an individual application. Each of the individual applications takes some data inputs and produces data outputs, which are then consumed by subsequent tasks according to the workflow definition. They are termed scientific because they are typically used by scientists to process, manage, and visualize ever-increasing amounts of data using "scientific" applications. 
-
-   #. **Scientific Workflow System**: One or more applications that aid a user in setting up, scheduling, running, and monitoring a user-defined scientific workflow. 
-
-   #. **Software Framework**: A collection of software for building applications in a specific domain. The framework defines the interfaces between the software components, provides example applications that can be developed using the provided software, and represents a clear set of interfaces. The software can be extended to build other applications.
-
-      
-Overview
-========
-
-A Level 1 diagram showing the system context for the SimCenter applications, i.e., how it fits in the world,
-is shown in :numref:`architecture figContext`. It shows SimCenter applications (EE-UQ, WE-UQ, HydroUQ, PBE, R2D) as a box in the center surrounded by the user and the user's systems. The SimCenter applications allow a user to create and run scientific workflow applications; the data for the applications may be obtained from the web or DataDepot. The workflow applications are run on either the local desktop or on some HPC at |DesignSafe|.
-
-.. _architecture figContext:
-
-.. figure:: figures/context.png
-   :align: center
-   :width: 800
-   :figclass: align-center
-
-   System context diagram for SimCenter applications.
-
-Given how SimCenter applications fit in with the environment, a level 2 diagram demonstrates how the
-SimCenter applications are broken into high-level components. The SimCenter applications are, as shown in
-:numref:`architecture figContainer`, split into two components: A front-end UI and a back-end application that runs the workflow. The front-end applications are desktop applications written using the cross-platform `Qt framework <https://www.qt.io/product/framework>`_. The back end is an application that processes the input from the front end, which comes in the form of a JSON file, creates a workflow, and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to the NHE community through DesignSafe.
-
-.. _architecture figContainer:
 
-.. figure:: figures/container.png
-   :align: center
-   :width: 800
-   :figclass: align-center
-
-   System container diagram for SimCenter applications.
+Documentation of the SimCenter software architecture is detailed in the following pages:
 
-Two level 3 diagrams are now presented, which break up the two containers into the major building blocks or
-components in C4 terminology. In :numref:`architecture figComponentFront`, the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the jigsaw puzzle analogy, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece. For the chosen application, they provide the inputs. When the inputs are all provided, the user can choose to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen, the widgets may subsequently interact with web services through HTTPS requests or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.
 
-.. _architecture figComponentFront:
-
-.. figure:: figures/componentFront.png
-   :align: center
-   :width: 800
-   :figclass: align-center
-
-   Component diagram for front-end UI.
-
-The component diagram for the back-end application shown in :numref:`architecture figComponentBack`, shows that the back-end comprises several component applications. The application ``femUQ.py`` is the application that parses the input from the front end, sets up the workflow by creating a ``workflow_driver`` script and then launches the UQ engine. The choice of UQ Engine and applications to run in the workflow is determined from the data passed from the UI and information contained in a file, ``WorkflowApplication.json``. The ``WorkflowApplication.json`` file is a file that maps the applications specified in the output from the UI with a specific application contained on the users' local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the ``workflow_driver`` file is created, control is passed to a UQ engine, which repeatedly runs the ``workflow_driver`` to generate the results. In running the workflow, some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the back-end application running locally or remotely on an HPC at DesignSafe.
-
-.. _architecture figComponentBack:
-
-.. figure:: figures/componentBack.png
-   :align: center
-   :width: 800
-   :figclass: align-center
-
-   Component diagram for Backend Application.
-
-.. note::
-
-   ``femUQ.py`` is the back-end application for the EE-UQ, WE-UQ, Hydro-UQ, and PBE applications. For R2D, the back-end application is ``R2D_Workflow.py``.
-
-The interaction between the front-end and the back-end is best understood by looking at the sequence of events when the user presses the ``Run`` button. As shown in the figure below, the UI application will first perform several steps:
-
-1. It will create a temporary directory in the Documents folder named ``tmp.SimCenter``, and inside ``tmp.SimCenter`` will create another directory ``templatedir``.
-
-2. It will then run through all the currently selected widgets and invoke the ``copyFiles()`` method, telling these widgets to copy all files needed during the workflow to the ``templatedir`` directory.
-
-3. It will then create a JSON file and will run through the currently selected widgets and on each invokes the methods ``outputToJSON()`` and ``outputAppDataToJSON``, these telling the application to augment the JSON file with the inputs the user has provided in the widget and also the name of the widget.
-
-4. The UI will start the back-end application and spin until the back-end application returns with a completion signal.
-
-Now that the UI has been handed over to the back-end application, the back-end application will perform the following:
-
-5. Open the output file from the UI and parse it to obtain the name of the application to run and the arguments to run the application with. Open up another file, the ``WorkflowApplications.json`` file, contained with the application to determine, given the application name, the full path to the executable to be invoked. It will create in ``templatedir`` a file named ``workflow_driver``. When run by the UQ engine, this file is a script file that will generate a file named ``results.out``. ``results.out`` when the ``workflow_driver`` script has completed will contain a single line of space-separated values, one value for each EDP.
-   
-6.  It will invoke each application with supplied arguments and an additional command-line argument, ``--getRV``, to inform the application to process the input file and create any additional random variables and input files needed before the workflow runs.
-
-7. It will then launch the UQengine. The UQengine is typically a pre- and post-processor to an existing UQ engine.
-
-8. The pre-processor takes the JSON input file and creates an input file needed by the actual UQ engine.
-
-9. The pre-processor will launch the UQ application. This application will typically run the ``workflow_driver`` many times, passing as input to the workflow a file ``\params`` and obtaining output from the ``workflow_driver`` a file ``results.out``.
-
-10. When done, the engine will output its results.
-
-11. The UQengine will notify the UQpreprocessor that it is done.
+.. toctree-filt::
+   :maxdepth: 2
 
-12. The UQpreprocessor will notify the femUQ application that it is done.
-    
-13. The femUQ application will notify the UI that it is done.
+   overview.rst
+   file-types.rst
+   backendApplications.rst
+   :R2D:workflows
+   :R2D:run-manually
+   :notQuoFEM:c4model
 
-14. The UI will read the results and present them to the user.
-    
 
-.. _architecture figSequenceLocal:
+Within the natural hazards engineering community, there exist several widely used open-source applications, e.g., OpenFOAM, and online datasets, e.g., PEER NGA, that researchers are currently using. Consequently, and to avoid duplication, SimCenter applications incorporate many widely used applications, e.g., OpenFOAM. To do this, SimCenter develops pre- and post-processors for these existing applications and utilizes web technologies for accessing online services.
 
-.. figure:: figures/sequenceLocal.png
-   :align: center
-   :width: 800
-   :figclass: align-center
+.. 
+   #. DL: application to determine the damage and loss to the building/infrastructure given the event.
+   #. EDP: application to determine the response parameter given the event, building/lifeline, and damage and loss application.
+   #. BRAILS: a framework of applications for creating regional-level building inventories using machine learning.   
+   #. Databases containing information on building inventories for regional simulations, consequence functions for the DL applications, and experimental and corresponding simulation models for future machine learning-based AI algorithms.
 
-   Sequence diagram showing what happens when a Workflow runs Locally
 
+.. note:: **Definitions**
 
-That is for the case where the computations are performed on the local computer. When the computations are
-performed remotely, the steps are different. The first 8 steps are the same. But now, the UQwrapper will not
-start the UQ engine. Instead, control is returned to the UI. The UI will, as shown in the following: (11)
-Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in
-:numref:`architecture figSequenceRemote`. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The `TACC tapis <https://tapis-project.org/>`_ interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.
-
+   #. **Workflow**: “The automation of a business process, in whole or part, during which documents, information or tasks are passed from one participant to another for action, according to a set of procedural rules.” [Workflow Management Coalition].
 
-.. _architecture figSequenceRemote:
+   #. **Application**: A software application performs operations on data residing in a computer for a user or another program; it can be self-contained, typically termed a program or part of a group of programs.
 
-.. figure:: figures/sequenceRemote.png
-   :align: center
-   :width: 800
-   :figclass: align-center
+   #. **Scientific Workflow**: A sequence of steps propagating input data through various applications to produce output. It is a loosely coupled application performing workflows in which each coordinated task is performed using an individual application. Each of the individual applications takes some data inputs and produces data outputs, which are then consumed by subsequent tasks according to the workflow definition. They are termed scientific because they are typically used by scientists to process, manage, and visualize ever-increasing amounts of data using "scientific" applications. 
 
-   Sequence diagram showing what happens when a Workflow runs Remotely
+   #. **Scientific Workflow System**: One or more applications that aid a user in setting up, scheduling, running, and monitoring a user-defined scientific workflow. 
 
-.. only:: R2T_app
+   #. **Software Framework**: A collection of software for building applications in a specific domain. The framework defines the interfaces between the software components, provides example applications that can be developed using the provided software, and represents a clear set of interfaces. The software can be extended to build other applications.
 
-   .. include:: R2Dworkflows.rst
 
diff --git a/docs/_sources/common/developer_manual/architecture/desktop/architectureLevel4.rst.txt b/docs/_sources/common/developer_manual/architecture/desktop/architectureLevel4.rst.txt
index 9d7c78b9..3a7e8356 100644
--- a/docs/_sources/common/developer_manual/architecture/desktop/architectureLevel4.rst.txt
+++ b/docs/_sources/common/developer_manual/architecture/desktop/architectureLevel4.rst.txt
@@ -167,8 +167,6 @@ UML WE-UQ
 
 
 
-
-
 .. only:: PBE
 
 .. _lblUmlPBE:
diff --git a/docs/_sources/common/developer_manual/architecture/desktop/file-types.rst.txt b/docs/_sources/common/developer_manual/architecture/desktop/file-types.rst.txt
index 2d21f6bb..2d51b37f 100644
--- a/docs/_sources/common/developer_manual/architecture/desktop/file-types.rst.txt
+++ b/docs/_sources/common/developer_manual/architecture/desktop/file-types.rst.txt
@@ -1,4 +1,4 @@
-
+.. _lblFileTypes:
 
 **********************
 File Types and Schemas
diff --git a/docs/_sources/common/developer_manual/architecture/desktop/overview.rst.txt b/docs/_sources/common/developer_manual/architecture/desktop/overview.rst.txt
new file mode 100644
index 00000000..93d21c0b
--- /dev/null
+++ b/docs/_sources/common/developer_manual/architecture/desktop/overview.rst.txt
@@ -0,0 +1,118 @@
+.. _lblArchitectureOverview:
+
+Overview
+========
+
+A Level 1 diagram showing the system context for the SimCenter applications, i.e., how it fits in the world,
+is shown in :numref:`architecture figContext`. It shows SimCenter applications (EE-UQ, WE-UQ, HydroUQ, PBE, R2D) as a box in the center surrounded by the user and the user's systems. The SimCenter applications allow a user to create and run scientific workflow applications; the data for the applications may be obtained from the web or DataDepot. The workflow applications are run on either the local desktop or on some HPC at |DesignSafe|.
+
+.. _architecture figContext:
+
+.. figure:: figures/context.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   System context diagram for SimCenter applications.
+
+Given how SimCenter applications fit in with the environment, a level 2 diagram demonstrates how the
+SimCenter applications are broken into high-level components. The SimCenter applications are, as shown in
+:numref:`architecture figContainer`, split into two components: A front-end UI and a back-end application that runs the workflow. The front-end applications are desktop applications written using the cross-platform `Qt framework <https://www.qt.io/product/framework>`_. The back end is an application that processes the input from the front end, which comes in the form of a JSON file, creates a workflow, and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to the NHE community through DesignSafe.
+
+.. _architecture figContainer:
+
+.. figure:: figures/container.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   System container diagram for SimCenter applications.
+
+Two level 3 diagrams are now presented, which break up the two containers into the major building blocks or
+components in C4 terminology. In :numref:`architecture figComponentFront`, the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the jigsaw puzzle analogy, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece. For the chosen application, they provide the inputs. When the inputs are all provided, the user can choose to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen, the widgets may subsequently interact with web services through HTTPS requests or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.
+
+.. _architecture figComponentFront:
+
+.. figure:: figures/componentFront.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   Component diagram for front-end UI.
+
+The component diagram for the back-end application shown in :numref:`architecture figComponentBack`, shows that the back-end comprises several component applications. The application ``femUQ.py`` is the application that parses the input from the front end, sets up the workflow by creating a ``workflow_driver`` script and then launches the UQ engine. The choice of UQ Engine and applications to run in the workflow is determined from the data passed from the UI and information contained in a file, ``WorkflowApplication.json``. The ``WorkflowApplication.json`` file is a file that maps the applications specified in the output from the UI with a specific application contained on the users' local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the ``workflow_driver`` file is created, control is passed to a UQ engine, which repeatedly runs the ``workflow_driver`` to generate the results. In running the workflow, some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the back-end application running locally or remotely on an HPC at DesignSafe.
+
+.. _architecture figComponentBack:
+
+.. figure:: figures/componentBack.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   Component diagram for Backend Application.
+
+.. note::
+   ``femUQ.py`` is the back-end application for the EE-UQ, WE-UQ, Hydro-UQ, and PBE applications. For R2D, the back-end application is ``R2D_Workflow.py``.
+
+The interaction between the front-end and the back-end is best understood by looking at the sequence of events when the user presses the ``Run`` button. As shown in the figure below, the UI application will first perform several steps:
+
+1. It will create a temporary directory in the Documents folder named ``tmp.SimCenter``, and inside ``tmp.SimCenter`` will create another directory ``templatedir``.
+
+2. It will then run through all the currently selected widgets and invoke the ``copyFiles()`` method, telling these widgets to copy all files needed during the workflow to the ``templatedir`` directory.
+
+3. It will then create a JSON file and will run through the currently selected widgets and on each invokes the methods ``outputToJSON()`` and ``outputAppDataToJSON``, these telling the application to augment the JSON file with the inputs the user has provided in the widget and also the name of the widget.
+
+4. The UI will start the back-end application and spin until the back-end application returns with a completion signal.
+
+Now that the UI has been handed over to the back-end application, the back-end application will perform the following:
+
+5. Open the output file from the UI and parse it to obtain the name of the application to run and the arguments to run the application with. Open up another file, the ``WorkflowApplications.json`` file, contained with the application to determine, given the application name, the full path to the executable to be invoked. It will create in ``templatedir`` a file named ``workflow_driver``. When run by the UQ engine, this file is a script file that will generate a file named ``results.out``. ``results.out`` when the ``workflow_driver`` script has completed will contain a single line of space-separated values, one value for each EDP.
+   
+6.  It will invoke each application with supplied arguments and an additional command-line argument, ``--getRV``, to inform the application to process the input file and create any additional random variables and input files needed before the workflow runs.
+
+7. It will then launch the UQengine. The UQengine is typically a pre- and post-processor to an existing UQ engine.
+
+8. The pre-processor takes the JSON input file and creates an input file needed by the actual UQ engine.
+
+9. The pre-processor will launch the UQ application. This application will typically run the ``workflow_driver`` many times, passing as input to the workflow a file ``\params`` and obtaining output from the ``workflow_driver`` a file ``results.out``.
+
+10. When done, the engine will output its results.
+
+11. The UQengine will notify the UQpreprocessor that it is done.
+
+12. The UQpreprocessor will notify the femUQ application that it is done.
+    
+13. The femUQ application will notify the UI that it is done.
+
+14. The UI will read the results and present them to the user.
+    
+
+.. _architecture figSequenceLocal:
+
+.. figure:: figures/sequenceLocal.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   Sequence diagram showing what happens when a Workflow runs Locally
+
+
+That is for the case where the computations are performed on the local computer. When the computations are
+performed remotely, the steps are different. The first 8 steps are the same. But now, the UQwrapper will not
+start the UQ engine. Instead, control is returned to the UI. The UI will, as shown in the following: (11)
+Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in
+:numref:`architecture figSequenceRemote`. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The `TACC tapis <https://tapis-project.org/>`_ interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.
+
+
+.. _architecture figSequenceRemote:
+
+.. figure:: figures/sequenceRemote.png
+   :align: center
+   :width: 800
+   :figclass: align-center
+
+   Sequence diagram showing what happens when a Workflow runs Remotely
+
+.. only:: R2D_app
+
+   .. include:: R2Dworkflows.rst
diff --git a/docs/_sources/common/developer_manual/coding_style/desktop/coding_style.rst.txt b/docs/_sources/common/developer_manual/coding_style/desktop/coding_style.rst.txt
index 2ad328a0..c9ee8ced 100644
--- a/docs/_sources/common/developer_manual/coding_style/desktop/coding_style.rst.txt
+++ b/docs/_sources/common/developer_manual/coding_style/desktop/coding_style.rst.txt
@@ -1,35 +1,68 @@
 .. _lblCodingStyle:
 
-************
+============
 Coding Style
-************
+============
+
+Not all code needs to follow the guide perfectly, but it is important to try to maintain a standard of quality.
+
+The SimCenter frontend applications are written in **C++**. The applications that run in the backend are written in a mixture of languages: **Python**, **C**, and **C++**. The SimCenter strives to use a standard style across the applications. This section outlines that style. 
+
+.. contents:: Table of Contents
+   :local:
+
+
+Consistency is the most important aspect of style. The second most important aspect is following a style that the average programmer is used to reading. 
+
 
-The SimCenter frontend applications are written in **C++**. The applications that run in the backend are written in a mixture of languages: **Python**, **C**, and **C++**. The SimCenter strives to use a standard style across the applications. This section outlines that style. Consistency is the most important aspect of style. The second most important aspect is following a style that the average programmer is used to reading. Not all code will follow the guide, 
 
+.. _lbl-code-style-python:
+
+------------
 Python Style
-============
+------------
 
 For code written in Python, SimCenter programmers follow the widely used
 `Guide PEP 8 <https://www.python.org/dev/peps/pep-0008/>`_
 
+
+
+.. _lbl-code-style-c:
+
+-----------
 C/C++ Style
-===========
+-----------
 
 Unlike Python, C/C++ does not have a widely accepted style guideline. Some guidelines of note include the `Google Style <https://google.github.io/styleguide/cppguide.html>`_, the `C++ Core Guidelines <http://isocpp.github.io/CppCoreGuidelines/CppCoreGuidelines.html>`_ (edited by Stroustrup and Sutter), and an older
 C++ 
 
+
+
+.. _lbl-code-style-comments:
+
+--------
 Comments
 --------
 
 It goes without saying that you must use them. Try to use :code:`//` as opposed to :code:`/* */`, making it easier to comment out a block of code when debugging.
 
+
+
+.. _lbl-code-style-naming:
+
+------------------
 Naming Conventions
 ------------------
 
 All names should be meaningful and Follow a camel case approach. For classes, the names start with an uppercase letter; all class methods, functions, and variables shall begin with a lowercase letter. The exception is constant variables, which should be all uppercase, e.g. :code:`const double PI=3.14159265358979323;`
 
-Files
------
+
+
+.. _lbl-code-style-files:
+
+--------------------
+Files and Interfaces
+--------------------
 
 #. Use a ``.cpp`` extension for code files and a ``.h`` extension for interface files.
 #. All files should include at the start the :ref:`lblLicense`
@@ -49,8 +82,16 @@ An example header file.
 .. literalinclude:: SimCenterWidget.h
    :language: c++
 
-Variables
----------
+.. note:: 
+   Use 4 spaces per indentation level in both Python and C/C++ when viable.
+
+
+
+.. _lbl-code-style-variables:
+
+--------
+Variable
+--------
 
 #. Initialize all variables
 #. When initializing float and double variables with values that could be read as integer always include a ``.0``, e.g. :code:`double a = 1.0;`
diff --git a/docs/_sources/common/developer_manual/how_to_extend.rst.txt b/docs/_sources/common/developer_manual/how_to_extend.rst.txt
new file mode 100644
index 00000000..a5ad2617
--- /dev/null
+++ b/docs/_sources/common/developer_manual/how_to_extend.rst.txt
@@ -0,0 +1,17 @@
+.. _lbl_how_to_extend:
+
+*************
+How to Extend
+*************
+
+Our software is designed to be modular and extensible. As an open-source project, we are happy to welcome contributions from the community.
+
+If you would like to contribute, checkout our GitHub repositories at |GitHub| and familiarize yourself with the below resources:
+
+.. toctree-filt::
+   :maxdepth: 3
+
+   :desktop_app:coding_style/desktop/coding_style
+   :desktop_app:architecture/desktop/architecture
+   :pelicun:coding_style/pelicun/coding_style
+   :pelicun:API/pelicun/API
diff --git a/docs/_sources/common/developer_manual/how_to_extend/desktop/how_to_extend.rst.txt b/docs/_sources/common/developer_manual/how_to_extend/desktop/how_to_extend.rst.txt
deleted file mode 100644
index 3153ac4c..00000000
--- a/docs/_sources/common/developer_manual/how_to_extend/desktop/how_to_extend.rst.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-.. _lbl_how_to_extend:
-
-How to Extend
-=============
\ No newline at end of file
diff --git a/docs/_sources/common/developer_manual/verification/desktop/verification.rst.txt b/docs/_sources/common/developer_manual/verification/desktop/verification.rst.txt
index ecc70ec7..26e4df28 100644
--- a/docs/_sources/common/developer_manual/verification/desktop/verification.rst.txt
+++ b/docs/_sources/common/developer_manual/verification/desktop/verification.rst.txt
@@ -6,21 +6,23 @@ Verification
 
 .. only:: notR2D
 
-	  This chapter collects carefully designed verification exercises that we use to test the correctness of the implementation of the |app|.	  
+   This chapter collects carefully designed verification exercises that we use to test the correctness of the implementation of the |app|.	  
 	  
-	.. toctree-filt::
-           :maxdepth: 1
+   .. toctree-filt::
+     :maxdepth: 1
+     
+     :PBE:PBE/verificationPBE
+     :EEUQ:EEUQ/PortalFrameEarthquake
+     :EEUQ:EEUQ/ResponseSpectrum
+     :EEUQ:EEUQ/SiteResponse
+     :EEUQ:quoFEM/DakotaSensitivity
+     :WEUQ:WEUQ/PowerSpectralDensity
+     :WEUQ:WEUQ/TinFverification
+     :quoFEM:quoFEM/InterpointDistances
+     :quoFEM:quoFEM/DakotaSensitivity
+     :Hydro:HydroUQ/DakotaSensitivity
 
-           :PBE:PBE/verificationPBE
-           :EEUQ:EEUQ/PortalFrameEarthquake
-           :EEUQ:EEUQ/ResponseSpectrum
-           :EEUQ:EEUQ/SiteResponse
-           :EEUQ:quoFEM/DakotaSensitivity
-           :WEUQ:WEUQ/PowerSpectralDensity
-           :WEUQ:WEUQ/TinFverification
-           :quoFEM:quoFEM/InterpointDistances
-           :quoFEM:quoFEM/DakotaSensitivity
 
 .. only:: R2D_app
-
-	  Verification for |app| is performed as part of the `testbed work <file:///Users/fmckenna/release/SimCenterDocumentation/build/R2DTool/html/common/testbeds/atlantic_city/sample_results.html>`_. For each tesbed manual evaluation of randomly selected buildings from th testbed is performed by hand calculation to ensure the results for that building match the output results from the software.
+   
+   Verification for |app| is performed as part of the `testbed work <file:///Users/fmckenna/release/SimCenterDocumentation/build/R2DTool/html/common/testbeds/atlantic_city/sample_results.html>`_. For each tesbed manual evaluation of randomly selected buildings from th testbed is performed by hand calculation to ensure the results for that building match the output results from the software.
diff --git a/docs/_sources/common/front-matter/license.rst.txt b/docs/_sources/common/front-matter/license.rst.txt
index d18fe9fe..fd4f5a97 100644
--- a/docs/_sources/common/front-matter/license.rst.txt
+++ b/docs/_sources/common/front-matter/license.rst.txt
@@ -4,7 +4,7 @@
 Copyright and License
 *********************
 
-The |app| is copyright "The Regents of the University of California" and is licensed under the following BSD license:
+The |app| is copyrighted by "The Regents of the University of California" and is licensed under the following BSD license:
 
 .. literalinclude:: LICENSE
     :language: none
\ No newline at end of file
diff --git a/docs/_sources/common/reqments/All-Requirements_allCols.rst.txt b/docs/_sources/common/reqments/All-Requirements_allCols.rst.txt
index 38e50792..9b0bf8dc 100644
--- a/docs/_sources/common/reqments/All-Requirements_allCols.rst.txt
+++ b/docs/_sources/common/reqments/All-Requirements_allCols.rst.txt
@@ -13,7 +13,7 @@ R2D Requirements
   :widths: 8, 55, 8, 8, 12, 15
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalR2D.csv
-  :class: longtable		  	 	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -25,7 +25,7 @@ PBE Requirements
   :widths: 8, 55, 8, 8, 12, 15
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalPBE.csv
-  :class: longtable		  	 	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -37,7 +37,7 @@ WE-UQ Requirements
   :widths: 8, 55, 8, 8, 12, 15
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalWE.csv
-  :class: longtable		  	 	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -84,7 +84,7 @@ Earthquake Loading Requirements
 .. csv-filter:: Requirements - EL
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 55, 8, 10, 15, 10, 10, 10
-  :file: _out/Loading.csv
+  :file: Loading.csv
   :include: {0: '\**EL.*|#'}
   :included_cols: 0, 1, 2, 3, 4, 6, 9, 10
   :class: longtable		  		  
@@ -97,7 +97,7 @@ Wind Loading Requirements
 .. csv-filter:: Requirements - WL
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 10, 55, 8, 10, 15, 10, 10, 10
-  :file: _out/Loading.csv
+  :file: Loading.csv
   :include: {0: '\**WL.*|#'}
   :included_cols: 0, 1, 2, 3, 4, 7, 9, 10
   :class: longtable		  		  
@@ -111,9 +111,9 @@ Surge/Tsunami Loading Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 10, 65, 8, 10, 15, 25, 6, 6
   :included_cols: 0, 1, 2, 3, 4, 8, 9, 10
-  :file: _out/Loading.csv
+  :file: Loading.csv
   :include: {0: '\**HL.*|#'}
-  :class: longtable		  	    
+  :class: longtable
 
 .. include:: key.rst
 
@@ -124,8 +124,8 @@ UQ Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 35, 10, 10, 15, 10, 10, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
-  :file: _out/Uncertainty.csv
-  :class: longtable		  	 
+  :file: Uncertainty.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -136,8 +136,8 @@ RV Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 40, 10, 10, 15, 10, 10, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
-  :file: _out/RandomVariables.csv
-  :class: longtable		  	 
+  :file: RandomVariables.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -148,8 +148,8 @@ Modeling Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 50, 10, 10, 15, 10, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6, 7, 8, 9, 10
-  :file: _out/Modeling.csv
-  :class: longtable		  	 
+  :file: Modeling.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -160,8 +160,8 @@ Analysis Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 50, 10, 10, 15, 10, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6, 7, 8, 9, 10
-  :file: _out/Analysis.csv
-  :class: longtable		  	 
+  :file: Analysis.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -172,8 +172,8 @@ Damage & Loss Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 50, 8, 8, 12, 10, 20
   :included_cols: 0, 1, 2, 3, 4, 9, 10
-  :file: _out/Damage.csv
-  :class: longtable		  	 
+  :file: Damage.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -184,8 +184,8 @@ Recovery Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 50, 10, 10, 15, 10
   :included_cols: 0, 1, 2, 3, 4, 10
-  :file: _out/Recovery.csv
-  :class: longtable		  	 
+  :file: Recovery.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -196,8 +196,8 @@ Common Research Application Requirements
   :header: "#", "Description", "Source", "Priority", "Status", "quoFEM", "EE-UQ", "WE-UQ", "Hydro-UQ", "PBE", "R2D"
   :widths: 8, 45, 8, 8, 12, 10, 10, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
-  :file: _out/Common.csv
-  :class: longtable		  	 
+  :file: Common.csv
+  :class: longtable
 
 .. include:: key.rst
 
@@ -209,7 +209,7 @@ BRAILS Requirements
   :widths: 8, 55, 8, 8, 12, 15
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalBRAILS.csv
-  :class: longtable		  	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -221,7 +221,7 @@ PELICUN Requirements
   :widths: 8, 55, 8, 8, 12, 15
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalPELICUN.csv
-  :class: longtable		  	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -233,7 +233,7 @@ BE Database Requirements
   :widths: 8, 55, 10, 10, 12, 10
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalBE.csv
-  :class: longtable		  	 
+  :class: longtable
 
 .. include:: key.rst
 
@@ -245,7 +245,7 @@ DL Database Requirements
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5
   :file: generalDBDL.csv
-  :class: longtable		  	 
+  :class: longtable
 
 .. include:: key.rst
 
diff --git a/docs/_sources/common/reqments/Common.rst.txt b/docs/_sources/common/reqments/Common.rst.txt
deleted file mode 100644
index 3902dc24..00000000
--- a/docs/_sources/common/reqments/Common.rst.txt
+++ /dev/null
@@ -1,60 +0,0 @@
-.. _lblRequirements:
-
-************
-Requirements
-************
-
-The purpose of presenting these requirements is to inform the community on the present capabilities of the |app| and features that could be added. The original set of requirements have come from a set of grand challenge reports, **GC**. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, **SP**. Additional requirements have come from users, **U** See section :ref:`features` if you have additional features you would like to see.
-
-
-quoFEM Requirements
--------------------
-
-.. csv-filter:: Requirements - QF
-  :header: "#", "Description", "Source", "Priority", "Status"
-  :file: _out/Applications.csv
-  :include: {0: 'QF.*'}
-  :widths: 10, 50, 10, 10, 10, 10
-  :included_cols: 0, 1, 2, 3, 4, 5
-
-
-.. include:: key.rst
-
-
-UQ Requirements
----------------
-
-.. csv-filter:: Requirements - Uncertainty Quantification Methods and Variables
-  :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/Uncertainty.csv
-  :widths: 10, 50, 10, 10, 10, 10
-  :included_cols: 0, 1, 2, 3, 4, 5
-
-
-.. include:: key.rst
-
-
-RV Requirements
----------------
-
-.. csv-filter:: Requirements - CR
-  :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/RandomVariables.csv
-  :widths: 10, 50, 10, 10, 10, 10
-  :included_cols: 0, 1, 2, 3, 4, 5
-
-
-.. include:: key.rst
-
-Common Research Application Requirements
-----------------------------------------
-
-.. csv-filter:: Requirements - CR
-  :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/Common.csv
-  :widths: 10, 50, 10, 10, 10, 10
-  :included_cols: 0, 1, 2, 3, 4, 5
-
-
-.. include:: key.rst
-
diff --git a/docs/_sources/common/reqments/EE-UQ-Requirements.rst.txt b/docs/_sources/common/reqments/EE-UQ-Requirements.rst.txt
index cfcf275c..f617d86d 100644
--- a/docs/_sources/common/reqments/EE-UQ-Requirements.rst.txt
+++ b/docs/_sources/common/reqments/EE-UQ-Requirements.rst.txt
@@ -14,7 +14,7 @@ Loading Requirements
 --------------------
 
 .. csv-filter:: Requirements - Earthquake Loading
-  :file: _out/Loading.csv
+  :file: Loading.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
@@ -26,7 +26,7 @@ Modeling Requirements
 ---------------------
 
 .. csv-filter:: Requirements - Modeling
-  :file: _out/Modeling.csv
+  :file: Modeling.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
@@ -37,7 +37,7 @@ Analysis Requirements
 ---------------------
 
 .. csv-filter:: Requirements - Analysis
-  :file: _out/Analysis.csv
+  :file: Analysis.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
@@ -48,7 +48,7 @@ UQ Requirements
 ---------------
 
 .. csv-filter:: Requirements - Uncertainty Quantification Methods and Variables
-  :file: _out/Uncertainty.csv
+  :file: Uncertainty.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
@@ -59,7 +59,7 @@ RV Requirements
 ---------------
 
 .. csv-filter:: Requirements - Random Variables
-  :file: _out/RandomVariables.csv
+  :file: RandomVariables.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
@@ -70,7 +70,7 @@ Common Research Application Requirements
 ----------------------------------------
 
 .. csv-filter:: Requirements - CR
-  :file: _out/Common.csv
+  :file: Common.csv
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation", "Implementation"
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 6
diff --git a/docs/_sources/common/reqments/reqQUOFE.rst.txt b/docs/_sources/common/reqments/reqQUOFE.rst.txt
index 3ff8ea2a..a3fa6152 100644
--- a/docs/_sources/common/reqments/reqQUOFE.rst.txt
+++ b/docs/_sources/common/reqments/reqQUOFE.rst.txt
@@ -4,7 +4,7 @@
 Requirements
 ************
 
-The purpose of presenting these requirements is to inform the community on the present capabilities of the |app| and features that could be added. The original set of requirements have come from a set of grand challenge reports, **GC**. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, **SP**. Additional requirements have come from users, **U**. See section :ref:`features` if you have additional features you would like to see.
+The purpose of presenting these requirements is to inform the community about the present capabilities of the |app| and features that could be added. The original set of requirements has come from a set of grand challenge reports, **GC**. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, **SP**. Additional requirements have come from users, **U**. See section :ref:`features` if you have additional features you would like to see.
 
 
 quoFEM Requirements
@@ -25,7 +25,7 @@ UQ Requirements
 
 .. csv-filter:: Requirements - Uncertainty Quantification Methods and Variables
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/Uncertainty.csv
+  :file: Uncertainty.csv
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5
 
@@ -38,7 +38,7 @@ RV Requirements
 
 .. csv-filter:: Requirements - CR
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/RandomVariables.csv
+  :file: RandomVariables.csv
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5
 
@@ -50,7 +50,7 @@ Common Research Application Requirements
 
 .. csv-filter:: Requirements - CR
   :header: "#", "Description", "Source", "Priority", "Status", "Implementation"
-  :file: _out/Common.csv
+  :file: Common.csv
   :widths: 10, 50, 10, 10, 10, 10
   :included_cols: 0, 1, 2, 3, 4, 5
 
diff --git a/docs/_sources/common/user_manual/examples/desktop/examples.rst.txt b/docs/_sources/common/user_manual/examples/desktop/examples.rst.txt
index 9b34c077..50f53f72 100644
--- a/docs/_sources/common/user_manual/examples/desktop/examples.rst.txt
+++ b/docs/_sources/common/user_manual/examples/desktop/examples.rst.txt
@@ -7,35 +7,35 @@ Examples
 
 .. only:: R2D_app
 
-   The following examples highlight the usage of R2D. The files for the examples are available on `Github <https://github.com/NHERI-SimCenter/R2DExamples>`_. The examples can also be downloaded and installed within the tool by going to the menu **Examples -> Manage Examples** and by checking the boxes of the examples that are desired. 
+   The following examples highlight the usage of R2D. The files for the examples are available on `GitHub <https://github.com/NHERI-SimCenter/R2DExamples>`_. The examples can also be downloaded and installed within the tool by going to the menu **Examples -> Manage Examples** and by checking the boxes of the examples that are desired. 
 
 .. only:: quoFEM_app
 
-   The following are a few examples showing the usage of quoFEM. Video companions showing these examples are also provided for selected problems. The files for the examples are available on Github.
+   The following are a few examples showing the usage of quoFEM. Video companions showing these examples are also provided for selected problems. The files for the examples are available on GitHub.
 
 .. only:: EEUQ_app
 
-   The following are a few examples showing the usage of EE-UQ. Video companions showing these examples are also provided. The files for the examples are available in Github.
+   The following are a few examples showing the usage of EE-UQ. Video companions showing these examples are also provided. The files for the examples are available in GitHub.
 
 .. only:: WEUQ_app
 
-   The following are a few examples showing the usage of WE-UQ. The files for the examples are available on Github.
+   The following are a few examples showing the usage of WE-UQ. The files for the examples are available on GitHub.
 
  .. only:: HydroUQ_app
 
-   The following are a few examples showing the usage of Hydro-UQ. The files for the examples are available in the `HydroUQ Github repository <https://github.com/NHERI-SimCenter/HydroUQ/tree/master/Examples>`_.
+   The following are a few examples showing the usage of Hydro-UQ. The files for the examples are available in the `HydroUQ GitHub repository <https://github.com/NHERI-SimCenter/HydroUQ/tree/master/Examples>`_.
    
 .. only:: PBE_app
 
-   The following are a few examples showing the usage of PBE. The files for the examples are available on Github. The scope of these examples is limited to damage and loss assessment. The usage of the tool for response estimation is identical to that of the EE-UQ application. Examples of those features are available in the `EE-UQ Documentation <https://nheri-simcenter.github.io/EE-UQ-Documentation/common/user_manual/examples/desktop/examples.html>`_.
+   The following are a few examples showing the usage of PBE. The files for the examples are available on GitHub. The scope of these examples is limited to damage and loss assessment. The usage of the tool for response estimation is identical to that of the EE-UQ application. Examples of those features are available in the `EE-UQ Documentation <https://nheri-simcenter.github.io/EE-UQ-Documentation/common/user_manual/examples/desktop/examples.html>`_.
 
-   All examples come with input files that are available in the `PBE Github repository <https://github.com/NHERI-SimCenter/PBE/tree/master/Examples>`_.	  
+   All examples come with input files that are available in the `PBE GitHub repository <https://github.com/NHERI-SimCenter/PBE/tree/master/Examples>`_.	  
 
 .. only:: PBE1_app
 
    The following examples demonstrate the usage of the PBE application. The scope of these examples is limited to damage and loss assessment. The usage of the tool for response estimation is identical to that of the EE-UQ application. Examples of those features are available in the `EE-UQ Documentation <https://nheri-simcenter.github.io/EE-UQ-Documentation/common/user_manual/examples/desktop/examples.html>`_.
 
-   All examples come with input files that are available in the `PBE Github repository <https://github.com/NHERI-SimCenter/PBE/tree/master/Examples>`_.
+   All examples come with input files that are available in the `PBE GitHub repository <https://github.com/NHERI-SimCenter/PBE/tree/master/Examples>`_.
 
 
 .. rendre:: filtered-gallery
diff --git a/docs/_sources/common/user_manual/installation/desktop/install_macOS.rst.txt b/docs/_sources/common/user_manual/installation/desktop/install_macOS.rst.txt
index ec24564e..ba8c0a45 100644
--- a/docs/_sources/common/user_manual/installation/desktop/install_macOS.rst.txt
+++ b/docs/_sources/common/user_manual/installation/desktop/install_macOS.rst.txt
@@ -260,10 +260,12 @@ Once the application starts, verify the setup by running an example problem |tes
 
    When the |app| is running, open the app/preferences or File/Preferences and make sure that python3 appears under **External Applications:Python**, as shown in the figure below. If you used older versions of SimCenter tools this was not the default. The exact location of Python3 that you installed can be found by opening the terminal application and executing the **which python3** command. Enter the path shown as a response in the Preferences panel under Python and then press the **Save** button.
 
-   .. figure:: figures/pythonPreferences.png
-      :align: center
-      :figclass: align-center
-      :width: 75%
+      .. _figUI-preferences:
+      
+      .. figure:: figures/pythonPreferences.png
+           :align: center
+           :figclass: align-center
+           :width: 75%
 
       Set Python Preferences.
 
diff --git a/docs/_sources/common/user_manual/releases/r2dCapabilities.rst.txt b/docs/_sources/common/user_manual/releases/r2dCapabilities.rst.txt
index cd144f3a..8a00b15a 100644
--- a/docs/_sources/common/user_manual/releases/r2dCapabilities.rst.txt
+++ b/docs/_sources/common/user_manual/releases/r2dCapabilities.rst.txt
@@ -5,7 +5,7 @@
 Capabilities
 ************
 
-**Version** |tool version| of |app| was released in **April 2024**, introducing significant updates and enhancements. This document outlines the functionalities available in the current version, highlighting new features and improvements marked in :blue:`blue`.
+**Version** |tool version| of |app| was released in **April 2024**, introducing significant updates and enhancements. This document outlines the functionalities available in the current version, highlighting new features and improvements in :blue:`blue`.
 
 Major updates from Version 4.0 are adding liquefaction-induced ground deformation estimation in the :blue:`regional earthquake event generation tool`, refactored :blue:`regional inventory generation tool BRAILS`, and upgraded :blue:`damage and loss engine Pelicun`. 
 
diff --git a/docs/_sources/common/user_manual/usage/desktop/RV.rst.txt b/docs/_sources/common/user_manual/usage/desktop/RV.rst.txt
index 6d9125f8..6a38bc72 100644
--- a/docs/_sources/common/user_manual/usage/desktop/RV.rst.txt
+++ b/docs/_sources/common/user_manual/usage/desktop/RV.rst.txt
@@ -112,7 +112,6 @@ For each random variable, the user must enter a name and select from the drop-do
 
    Distributions offered by the |app|.
 
-.. only:: notR2D 
 
    SimCenterUQ Engine
    +++++++++++++++++
@@ -220,7 +219,6 @@ For each random variable, the user must enter a name and select from the drop-do
    .. [ERA19]
       Engineering Risk Analysis Group, Technische Universität München: https://www.bgu.tum.de/era/software/eradist/ (Matlab/python programs and documentations)
 
-.. only:: notR2D
 
    Correlation matrix
    ------------------------
diff --git a/docs/_sources/common/user_manual/usage/desktop/SimCenterUQSampling.rst.txt b/docs/_sources/common/user_manual/usage/desktop/SimCenterUQSampling.rst.txt
index 8741be1f..8480b903 100644
--- a/docs/_sources/common/user_manual/usage/desktop/SimCenterUQSampling.rst.txt
+++ b/docs/_sources/common/user_manual/usage/desktop/SimCenterUQSampling.rst.txt
@@ -20,7 +20,7 @@ SimCenterUQ uniquely provides an option to define the distribution of random var
 	:width: 1200
 
 
-Click the check box to import correlated datasets
+Click the checkbox to import correlated datasets
 
 To enable this feature, the user can explicitly define the group of RVs that will share the index samples in the UQ tab using the ``Resample RVs from correlated dataset``:
 
diff --git a/docs/_sources/common/user_manual/usage/desktop/UQ.rst.txt b/docs/_sources/common/user_manual/usage/desktop/UQ.rst.txt
index df6998e6..f9aa625f 100644
--- a/docs/_sources/common/user_manual/usage/desktop/UQ.rst.txt
+++ b/docs/_sources/common/user_manual/usage/desktop/UQ.rst.txt
@@ -90,7 +90,7 @@ The **UQ** tab is the panel where users select the **UQ Engine** for uncertainty
              | ▪ :ref:`lblDakotaBayesianCalibration` in Dakota
              | ▪ :ref:`lblUCSDTMCMC` in UCSD-UQ   :bdg-link-danger:`Example1 <../../examples/desktop/qfem-0014/README.html>` :bdg-link-danger:`Example2 <../../examples/desktop/qfem-0019/README.html>`
 
-            | Theory details can be found in Dakota user manual and :ref:`here<lbluqUCSDSimTechnical>`.
+            | Theory details can be found in the Dakota user manual and :ref:`here<lbluqUCSDSimTechnical>`.
 
    .. grid:: 2
      :gutter: 1
@@ -154,7 +154,7 @@ The **UQ** tab is the panel where users select the **UQ Engine** for uncertainty
 Dakota UQ Engine
 ----------------
 
-This UQ engine utilizes the `Dakota Software <https://dakota.sandia.gov/>`_, a state-of-the-art research application that is robust and provides many methods for optimization and UQ, a selection of which we utilize in this application. **Dakota** provides the user with a large number of methods for different kinds of analyses. For this reason, we have divided the methods into categories through a pull-down menu, as shown below. Once the category has been selected, a number of different methods are made available to the user.
+This UQ engine utilizes the `Dakota Software <https://dakota.sandia.gov/>`_, a state-of-the-art research application that is robust and provides many methods for optimization and UQ, a selection of which we utilize in this application. **Dakota** provides the user with several methods for different kinds of analyses. For this reason, we have divided the methods into categories through a pull-down menu, as shown below. Once the category has been selected, a few different methods are made available to the user.
 
 * By checking the ``Parallel Execution``, the UQ analysis will be performed in parallel. It will try to use all the processors available on the machine. 
 
diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
index da692b05..2c4fd008 100644
--- a/docs/_sources/index.rst.txt
+++ b/docs/_sources/index.rst.txt
@@ -215,26 +215,20 @@
 
    :desktop_app:common/developer_manual/how_to_build/desktop/how_to_build
 
-   :desktop_app:common/developer_manual/architecture/desktop/architecture
-
-   :EEUQ:common/developer_manual/how_to_extend/desktop/how_to_extend
-   :WEUQ:common/developer_manual/how_to_extend/desktop/how_to_extend
-   :quoFEM:common/developer_manual/how_to_extend/desktop/how_to_extend
-   :R2D:common/developer_manual/how_to_extend/desktop/how_to_extend
-   .. :Hydro:common/developer_manual/how_to_extend/desktop/how_to_extend
+   :EEUQ:common/developer_manual/how_to_extend
+   :WEUQ:common/developer_manual/how_to_extend
+   :Hydro:common/developer_manual/how_to_extend
+   :quoFEM:common/developer_manual/how_to_extend
+   :R2D:common/developer_manual/how_to_extend
 
    :EEUQ:common/developer_manual/verification/desktop/verification
    :WEUQ:common/developer_manual/verification/desktop/verification
+   :Hydro:common/developer_manual/verification/desktop/verification
    :quoFEM:common/developer_manual/verification/desktop/verification
    :R2D:common/developer_manual/verification/desktop/verification
-   .. :Hydro:common/developer_manual/verification/desktop/verification
-
-   :desktop_app:common/developer_manual/coding_style/desktop/coding_style
-   :pelicun:common/developer_manual/coding_style/pelicun/coding_style
 
    :docTestbeds:common/developer_manual/examples/desktop/examples
 
-   :pelicun:common/developer_manual/API/pelicun/API
 
 
 Contact
diff --git a/docs/bootcamp/syllabus.html b/docs/bootcamp/syllabus.html
index 3ff86707..6ff3d515 100644
--- a/docs/bootcamp/syllabus.html
+++ b/docs/bootcamp/syllabus.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/bootcamp/syllabus_by_day.html b/docs/bootcamp/syllabus_by_day.html
index 408fa153..fee8bb65 100644
--- a/docs/bootcamp/syllabus_by_day.html
+++ b/docs/bootcamp/syllabus_by_day.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/bootcamp/syllabus_by_topic.html b/docs/bootcamp/syllabus_by_topic.html
index 965e3bba..f02f943f 100644
--- a/docs/bootcamp/syllabus_by_topic.html
+++ b/docs/bootcamp/syllabus_by_topic.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../common/developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/applications/DLApps.html b/docs/common/developer_manual/architecture/desktop/applications/DLApps.html
index 40ddbcba..633c702c 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/DLApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/DLApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.9. DL Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.9. DL Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.10. Regional Mapping Applications" href="regionalMapApps.html" />
-    <link rel="prev" title="2.2.8. Building Applications" href="buildingApps.html" />
+    <link rel="next" title="2.2.4.10. Regional Mapping Applications" href="regionalMapApps.html" />
+    <link rel="prev" title="2.2.4.8. Building Applications" href="buildingApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -190,11 +188,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.9. </span>DL Applications</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.4.9. </span>DL Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="dl-applications">
-<span id="lbldlapp"></span><h1><span class="section-number">2.2.9. </span>DL Applications<a class="headerlink" href="#dl-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lbldlapp"></span><h1><span class="section-number">2.2.4.9. </span>DL Applications<a class="headerlink" href="#dl-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>DL application</strong> performs the damage and loss assessment for the buildings subject to the regional event(s).
 It takes as input the building properties used for determining damages and losses (e. g. building occupancy, structure type, replacement cost, number of stories),
 specified in the <a class="reference internal" href="buildingApps.html#lblbuildingapp"><span class="std std-ref">BIM file</span></a>, as well as the response simulation output recorded in the <a class="reference internal" href="EDPApps.html#lbledpapp"><span class="std std-ref">EDP file</span></a>.
diff --git a/docs/common/developer_manual/architecture/desktop/applications/EDPApps.html b/docs/common/developer_manual/architecture/desktop/applications/EDPApps.html
index c4aa3d61..7b3669a2 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/EDPApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/EDPApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.5. EDP Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.5. EDP Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.6. Simulation Applications" href="simulationApps.html" />
-    <link rel="prev" title="2.2.4. Modeling Applications" href="modelingApps.html" />
+    <link rel="next" title="2.2.4.6. Simulation Applications" href="simulationApps.html" />
+    <link rel="prev" title="2.2.4.4. Modeling Applications" href="modelingApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
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@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="eventApps.html">2.2.3. Event Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="modelingApps.html">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="simulationApps.html">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="UQApps.html">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a><ul class="current">
+<li class="toctree-l4"><a class="reference internal" href="eventApps.html">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="modelingApps.html">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="simulationApps.html">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="UQApps.html">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,11 +205,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.5. </span>EDP Applications</li>
+      <li><span class="section-number">2.2.4.5. </span>EDP Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -227,7 +231,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="edp-applications">
-<span id="lbledpapp"></span><h1><span class="section-number">2.2.5. </span>EDP Applications<a class="headerlink" href="#edp-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lbledpapp"></span><h1><span class="section-number">2.2.4.5. </span>EDP Applications<a class="headerlink" href="#edp-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>EDP application</strong> specifies the types of <em>engineering demand parameters</em> (EDP) expected as output from the response simulation.
 It determines the EDP type from building properties in the <a class="reference internal" href="buildingApps.html#lblbuildingapp"><span class="std std-ref">BIM file</span></a>, the type of event in the <a class="reference internal" href="eventApps.html#lbleventapp"><span class="std std-ref">EVENT file</span></a>, and the model information from the <a class="reference internal" href="modelingApps.html#lblmodelingapp"><span class="std std-ref">SAM file</span></a>.
 It writes the type, location, and direction (DOF) of each EDP for a simulation in an <code class="docutils literal notranslate"><span class="pre">EDP.json</span></code> file, located in its corresponding <strong>simulation working directory</strong>.
diff --git a/docs/common/developer_manual/architecture/desktop/applications/UQApps.html b/docs/common/developer_manual/architecture/desktop/applications/UQApps.html
index ad7c12fb..6d4fbfea 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/UQApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/UQApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.7. UQ Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.7. UQ Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.8. Building Applications" href="buildingApps.html" />
-    <link rel="prev" title="2.2.6. Simulation Applications" href="simulationApps.html" />
+    <link rel="next" title="2.2.4.8. Building Applications" href="buildingApps.html" />
+    <link rel="prev" title="2.2.4.6. Simulation Applications" href="simulationApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
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@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="eventApps.html">2.2.3. Event Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="modelingApps.html">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="EDPApps.html">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="simulationApps.html">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a><ul class="current">
+<li class="toctree-l4"><a class="reference internal" href="eventApps.html">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="modelingApps.html">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="EDPApps.html">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="simulationApps.html">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,11 +205,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.7. </span>UQ Applications</li>
+      <li><span class="section-number">2.2.4.7. </span>UQ Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -227,7 +231,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="uq-applications">
-<span id="lbluqapp"></span><h1><span class="section-number">2.2.7. </span>UQ Applications<a class="headerlink" href="#uq-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lbluqapp"></span><h1><span class="section-number">2.2.4.7. </span>UQ Applications<a class="headerlink" href="#uq-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>UQ application</strong> is used to sample <em>random variables</em> (RV) specified in any of the workflow steps (Event, Modeling, EDP, Simulation) for uncertainty quantification, then to run commands written in the <strong>driver file</strong> which call on the backend applications to execute the R2D Workflow.
 It first populates values for the RVs, sampled from specified probability distributions, in the corresponding files (EVENT.json, SAM.json, EDP.json, SIM.json) for each simulation before executing the workflow.
 If no RVs are specified, then the UQ application directly runs commands in the driver file without random sampling.</p>
diff --git a/docs/common/developer_manual/architecture/desktop/applications/buildingApps.html b/docs/common/developer_manual/architecture/desktop/applications/buildingApps.html
index 3616a360..2148430a 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/buildingApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/buildingApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.8. Building Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.8. Building Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.9. DL Applications" href="DLApps.html" />
-    <link rel="prev" title="2.2.7. UQ Applications" href="UQApps.html" />
+    <link rel="next" title="2.2.4.9. DL Applications" href="DLApps.html" />
+    <link rel="prev" title="2.2.4.7. UQ Applications" href="UQApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -190,11 +188,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.8. </span>Building Applications</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.4.8. </span>Building Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="building-applications">
-<span id="lblbuildingapp"></span><h1><span class="section-number">2.2.8. </span>Building Applications<a class="headerlink" href="#building-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lblbuildingapp"></span><h1><span class="section-number">2.2.4.8. </span>Building Applications<a class="headerlink" href="#building-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>building application</strong> creates <em>building information model</em> (BIM) files for each building. It takes as input the range of asset IDs selected for simulation (expressed as “min” and “max” ID, specified in the <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">configuration file</span></a>) and the building-specific parameters for each simulation (specified in the <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">building source file</span></a>).
 The inputs are parsed into <code class="docutils literal notranslate"><span class="pre">#-BIM.json</span></code> files in the <strong>results</strong> folder.</p>
 <div class="align-center figure">
diff --git a/docs/common/developer_manual/architecture/desktop/applications/eventApps.html b/docs/common/developer_manual/architecture/desktop/applications/eventApps.html
index 5936b1ee..2bc4566d 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/eventApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/eventApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.3. Event Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.3. Event Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.4. Modeling Applications" href="modelingApps.html" />
-    <link rel="prev" title="2.2.2. UQ Pre-processors" href="preprocUQ.html" />
+    <link rel="next" title="2.2.4.4. Modeling Applications" href="modelingApps.html" />
+    <link rel="prev" title="2.2.4.2. UQ Pre-processors" href="preprocUQ.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.3. Event Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="modelingApps.html">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="EDPApps.html">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="simulationApps.html">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="UQApps.html">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a><ul class="current">
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="modelingApps.html">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="EDPApps.html">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="simulationApps.html">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="UQApps.html">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,11 +205,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.3. </span>Event Applications</li>
+      <li><span class="section-number">2.2.4.3. </span>Event Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -227,7 +231,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="event-applications">
-<span id="lbleventapp"></span><h1><span class="section-number">2.2.3. </span>Event Applications<a class="headerlink" href="#event-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lbleventapp"></span><h1><span class="section-number">2.2.4.3. </span>Event Applications<a class="headerlink" href="#event-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>event application</strong> takes the event(s) selected for a building site, associates each one with a simulation, and creates EVENT files containing the event intensity measures. It obtains the name of the event from the <a class="reference internal" href="buildingApps.html#lblbuildingapp"><span class="std std-ref">BIM file</span></a> and the intensity measure information from the input <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">event files</span></a>.
 This input information is saved in an <code class="docutils literal notranslate"><span class="pre">EVENT.json</span></code> file, located in its corresponding <strong>simulation working directory</strong>.</p>
 <div class="align-center figure">
diff --git a/docs/common/developer_manual/architecture/desktop/applications/modelingApps.html b/docs/common/developer_manual/architecture/desktop/applications/modelingApps.html
index de4ea70e..9e7297cc 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/modelingApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/modelingApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.4. Modeling Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.4. Modeling Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.5. EDP Applications" href="EDPApps.html" />
-    <link rel="prev" title="2.2.3. Event Applications" href="eventApps.html" />
+    <link rel="next" title="2.2.4.5. EDP Applications" href="EDPApps.html" />
+    <link rel="prev" title="2.2.4.3. Event Applications" href="eventApps.html" />
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@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="eventApps.html">2.2.3. Event Applications</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="EDPApps.html">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="simulationApps.html">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="UQApps.html">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a><ul class="current">
+<li class="toctree-l4"><a class="reference internal" href="eventApps.html">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="EDPApps.html">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="simulationApps.html">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="UQApps.html">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,11 +205,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.4. </span>Modeling Applications</li>
+      <li><span class="section-number">2.2.4.4. </span>Modeling Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -227,7 +231,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="modeling-applications">
-<span id="lblmodelingapp"></span><h1><span class="section-number">2.2.4. </span>Modeling Applications<a class="headerlink" href="#modeling-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lblmodelingapp"></span><h1><span class="section-number">2.2.4.4. </span>Modeling Applications<a class="headerlink" href="#modeling-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>modeling application</strong> consolidates information on the <em>structural analysis model</em> (SAM) used to represent the building on each site.
 It takes as input the <a class="reference internal" href="buildingApps.html#lblbuildingapp"><span class="std std-ref">BIM file</span></a>, the <a class="reference internal" href="eventApps.html#lbleventapp"><span class="std std-ref">EVENT file</span></a>, and information on the structural model used for response simulation, specified in the <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">configuration file</span></a>.
 The input structural model information is parsed into a <code class="docutils literal notranslate"><span class="pre">SAM.json</span></code> file, located in its corresponding <strong>simulation working directory</strong>.</p>
diff --git a/docs/common/developer_manual/architecture/desktop/applications/preprocFEM.html b/docs/common/developer_manual/architecture/desktop/applications/preprocFEM.html
index 870b89f8..f31d9e4a 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/preprocFEM.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/preprocFEM.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.1. FEM Pre-processors &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.1. FEM Pre-processors &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.2. UQ Pre-processors" href="preprocUQ.html" />
-    <link rel="prev" title="2.2. Backend Applications" href="../backendApplications.html" />
+    <link rel="next" title="2.2.4.2. UQ Pre-processors" href="preprocUQ.html" />
+    <link rel="prev" title="2.2.4. Backend Applications" href="../backendApplications.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -190,11 +188,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.1. </span>FEM Pre-processors</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.4.1. </span>FEM Pre-processors</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="fem-pre-processors">
-<h1><span class="section-number">2.2.1. </span>FEM Pre-processors<a class="headerlink" href="#fem-pre-processors" title="Permalink to this heading">¶</a></h1>
+<h1><span class="section-number">2.2.4.1. </span>FEM Pre-processors<a class="headerlink" href="#fem-pre-processors" title="Permalink to this heading">¶</a></h1>
 </div>
 
 
diff --git a/docs/common/developer_manual/architecture/desktop/applications/preprocUQ.html b/docs/common/developer_manual/architecture/desktop/applications/preprocUQ.html
index 9eb34026..58323bb1 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/preprocUQ.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/preprocUQ.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.2. UQ Pre-processors &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.2. UQ Pre-processors &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.3. Event Applications" href="eventApps.html" />
-    <link rel="prev" title="2.2.1. FEM Pre-processors" href="preprocFEM.html" />
+    <link rel="next" title="2.2.4.3. Event Applications" href="eventApps.html" />
+    <link rel="prev" title="2.2.4.1. FEM Pre-processors" href="preprocFEM.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -190,11 +188,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.2. </span>UQ Pre-processors</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.4.2. </span>UQ Pre-processors</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="uq-pre-processors">
-<h1><span class="section-number">2.2.2. </span>UQ Pre-processors<a class="headerlink" href="#uq-pre-processors" title="Permalink to this heading">¶</a></h1>
+<h1><span class="section-number">2.2.4.2. </span>UQ Pre-processors<a class="headerlink" href="#uq-pre-processors" title="Permalink to this heading">¶</a></h1>
 
 
 
diff --git a/docs/common/developer_manual/architecture/desktop/applications/regionalMapApps.html b/docs/common/developer_manual/architecture/desktop/applications/regionalMapApps.html
index 73fcc64b..e32f65bf 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/regionalMapApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/regionalMapApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.10. Regional Mapping Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.10. Regional Mapping Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.3. C4 Model of Software Architecture" href="../c4model.html" />
-    <link rel="prev" title="2.2.9. DL Applications" href="DLApps.html" />
+    <link rel="next" title="2.2.5. C4 Model of Software Architecture" href="../c4model.html" />
+    <link rel="prev" title="2.2.4.9. DL Applications" href="DLApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -190,11 +188,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.10. </span>Regional Mapping Applications</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.4.10. </span>Regional Mapping Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="regional-mapping-applications">
-<span id="lblregionalmapapp"></span><h1><span class="section-number">2.2.10. </span>Regional Mapping Applications<a class="headerlink" href="#regional-mapping-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lblregionalmapapp"></span><h1><span class="section-number">2.2.4.10. </span>Regional Mapping Applications<a class="headerlink" href="#regional-mapping-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>regional mapping application</strong> selects events for each building site.
 The number of events is specified by the user in the <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">configuration file</span></a> under “samples”.
 For the set of candidate events, <a class="reference internal" href="../file-types/Inputs.html#lbluserdefinputs"><span class="std std-ref">event files</span></a> must be provided by the user in the <strong>input_data/records</strong> folder.
diff --git a/docs/common/developer_manual/architecture/desktop/applications/simulationApps.html b/docs/common/developer_manual/architecture/desktop/applications/simulationApps.html
index 8a95ca14..8c6d3330 100644
--- a/docs/common/developer_manual/architecture/desktop/applications/simulationApps.html
+++ b/docs/common/developer_manual/architecture/desktop/applications/simulationApps.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2.6. Simulation Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4.6. Simulation Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2.7. UQ Applications" href="UQApps.html" />
-    <link rel="prev" title="2.2.5. EDP Applications" href="EDPApps.html" />
+    <link rel="next" title="2.2.4.7. UQ Applications" href="UQApps.html" />
+    <link rel="prev" title="2.2.4.5. EDP Applications" href="EDPApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="eventApps.html">2.2.3. Event Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="modelingApps.html">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="EDPApps.html">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="UQApps.html">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a><ul class="current">
+<li class="toctree-l4"><a class="reference internal" href="eventApps.html">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="modelingApps.html">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="EDPApps.html">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="UQApps.html">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,11 +205,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-          <li><a href="../backendApplications.html"><span class="section-number">2.2. </span>Backend Applications</a> &raquo;</li>
+          <li><a href="../backendApplications.html"><span class="section-number">2.2.4. </span>Backend Applications</a> &raquo;</li>
         
-      <li><span class="section-number">2.2.6. </span>Simulation Applications</li>
+      <li><span class="section-number">2.2.4.6. </span>Simulation Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -227,7 +231,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="simulation-applications">
-<span id="lblsimulationapp"></span><h1><span class="section-number">2.2.6. </span>Simulation Applications<a class="headerlink" href="#simulation-applications" title="Permalink to this heading">¶</a></h1>
+<span id="lblsimulationapp"></span><h1><span class="section-number">2.2.4.6. </span>Simulation Applications<a class="headerlink" href="#simulation-applications" title="Permalink to this heading">¶</a></h1>
 <p>The <strong>simulation application</strong> specifies parameters and executes the script for the response simulation. These parameters may include the integrator scheme, convergence tolerance, step size, etc. of the numerical analysis.
 It takes as input the <a class="reference internal" href="buildingApps.html#lblbuildingapp"><span class="std std-ref">BIM file</span></a>, the <a class="reference internal" href="eventApps.html#lbleventapp"><span class="std std-ref">EVENT file</span></a>, the <a class="reference internal" href="modelingApps.html#lblmodelingapp"><span class="std std-ref">SAM file</span></a>, and the <a class="reference internal" href="EDPApps.html#lbledpapp"><span class="std std-ref">EDP file</span></a>.
 After response simulation is completed, the <code class="docutils literal notranslate"><span class="pre">EDP.json</span></code> file is populated with the resulting EDPs and saved in the <strong>simulation working directory</strong>. Note that the <code class="docutils literal notranslate"><span class="pre">SIM.json</span></code> file is not saved in the directory.</p>
diff --git a/docs/common/developer_manual/architecture/desktop/architecture.html b/docs/common/developer_manual/architecture/desktop/architecture.html
index fdf2a07b..d9e747a5 100644
--- a/docs/common/developer_manual/architecture/desktop/architecture.html
+++ b/docs/common/developer_manual/architecture/desktop/architecture.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2. Software Architecture &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2. Software Architecture &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="2.1. File Types and Schemas" href="file-types.html" />
-    <link rel="prev" title="1. How to Build" href="../../how_to_build/desktop/how_to_build.html" />
+    <link rel="next" title="2.2.1. Overview" href="overview.html" />
+    <link rel="prev" title="2.1. Coding Style" href="../../coding_style/desktop/coding_style.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,16 +138,18 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">2. Software Architecture</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2"><a class="reference internal" href="backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l2"><a class="reference internal" href="c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#overview">2.4. Overview</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">2.2. Software Architecture</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3"><a class="reference internal" href="backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3"><a class="reference internal" href="c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -196,7 +198,9 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-      <li><span class="section-number">2. </span>Software Architecture</li>
+          <li><a href="../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2. </span>Software Architecture</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -216,7 +220,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="software-architecture">
-<span id="lblarchitecture"></span><h1><span class="section-number">2. </span>Software Architecture<a class="headerlink" href="#software-architecture" title="Permalink to this heading">¶</a></h1>
+<span id="lblarchitecture"></span><h1><span class="section-number">2.2. </span>Software Architecture<a class="headerlink" href="#software-architecture" title="Permalink to this heading">¶</a></h1>
 <p>The EE-UQ app is one of the SimCenter’s computational applications, which are <a class="reference external" href="https://en.wikipedia.org/wiki/Scientific_workflow_system">scientific workflow systems</a> that executes a sequence of computational tasks specialized for natural hazard engineering (NHE) problems. In contrast to more general-purpose scientific workflow systems (such as <a class="reference external" href="https://taverna.incubator.apache.org/">Taverna</a>, <a class="reference external" href="https://kepler-project.org/">Kepler</a>, and <a class="reference external" href="https://pegasus.isi.edu/">Pegasus</a>), SimCenter workflow systems include the following features:</p>
 <blockquote>
 <div><ul class="simple">
@@ -227,26 +231,9 @@
 <li><p>a modular framework that allows developers to incorporate their own software applications as components to the workflow system, so long as it meets the input-output structure at component interfaces.</p></li>
 </ul>
 </div></blockquote>
-<p>Documentation of the software architecture is detailed in the following pages:</p>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l1"><a class="reference internal" href="backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="c4model.html">2.3. C4 Model of Software Architecture</a></li>
-</ul>
-</div>
-<ol class="arabic simple">
-<li><p>DL: application to determine the damage and loss to the building/infrastructure given the event.</p></li>
-<li><p>EDP: application to determine the response parameter given the event, building/lifeline, and damage and loss application.</p></li>
-<li><p>BRAILS: a framework of applications for creating regional-level building inventories using machine learning.</p></li>
-<li><p>Databases containing information on building inventories for regional simulations, consequence functions for the DL applications, and experimental and corresponding simulation models for future machine learning-based AI algorithms.</p></li>
-</ol>
-<blockquote>
-<div><p>Within the natural hazards engineering community, there exist several widely used open-source applications, e.g., OpenFOAM, and online datasets, e.g., PEER NGA, that researchers are currently using. Consequently, and to avoid duplication, SimCenter applications incorporate many widely used applications, e.g., OpenFOAM. To do this, SimCenter develops pre- and post-processors for these existing applications and utilizes web technologies for accessing online services.</p>
-</div></blockquote>
 <div class="align-center figure" id="id2">
 <span id="figframework"></span><a class="reference internal image-reference" href="../../../../_images/SimCenterFramework.png"><img alt="../../../../_images/SimCenterFramework.png" src="../../../../_images/SimCenterFramework.png" style="width: 1000px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.10 </span><span class="caption-text">SimCenter Software Framework</span><a class="headerlink" href="#id2" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.4 </span><span class="caption-text">SimCenter Software Framework</span><a class="headerlink" href="#id2" title="Permalink to this image">¶</a></p>
 </div>
 <p>The SimCenter scientific workflow systems aim to facilitate the use, reuse, and extension of common workflows encountered in NHE by a broad range of natural hazards engineering researchers with varying software skills. This chapter presents the software architecture for the SimCenter framework and EE-UQ app using the <a class="reference external" href="https://c4model.com">C4 model</a> to encourage this use and adoption. The <strong>C4</strong> model is a graphical approach for documenting software architecture through diagrams describing and communicating the software architecture at various levels of abstraction. It is a top-down approach that starts at a high level (level 1), showing how a user would interact with the software, and drills down through three more levels, with level 4 containing the typical UML diagrams. The <strong>C4</strong> model was chosen to provide NHE researchers with a diverse range of software architecture knowledge to understand the software architecture behind SimCenter applications that fit their skill level. The four levels:</p>
 <ul class="simple">
@@ -256,6 +243,28 @@
 <li><p>Level 4: The level four diagrams show how the individual components are implemented. They are typically UML class diagrams.</p></li>
 </ul>
 <p>The following sections present the architecture of SimCenter the SimCenter to level 3:</p>
+<p>Documentation of the SimCenter software architecture is detailed in the following pages:</p>
+<div class="toctree-wrapper compound">
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-types.html">2.2.3. File Types and Schemas</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="file-types/Inputs.html">2.2.3.1. Inputs</a></li>
+<li class="toctree-l2"><a class="reference internal" href="file-types/Outputs.html">2.2.3.2. Outputs</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="backendApplications.html">2.2.4. Backend Applications</a><ul>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="c4model.html">2.2.5. C4 Model of Software Architecture</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="c4model.html#level-1-context-diagram">2.2.5.1. Level 1: Context Diagram</a></li>
+<li class="toctree-l2"><a class="reference internal" href="c4model.html#level-2-container-diagram">2.2.5.2. Level 2: Container Diagram</a></li>
+<li class="toctree-l2"><a class="reference internal" href="c4model.html#level-3-component-diagram">2.2.5.3. Level 3: Component Diagram</a></li>
+<li class="toctree-l2"><a class="reference internal" href="c4model.html#level-4-code-diagram">2.2.5.4. Level 4: Code Diagram</a></li>
+</ul>
+</li>
+</ul>
+</div>
+<p>Within the natural hazards engineering community, there exist several widely used open-source applications, e.g., OpenFOAM, and online datasets, e.g., PEER NGA, that researchers are currently using. Consequently, and to avoid duplication, SimCenter applications incorporate many widely used applications, e.g., OpenFOAM. To do this, SimCenter develops pre- and post-processors for these existing applications and utilizes web technologies for accessing online services.</p>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
 <p><strong>Definitions</strong></p>
@@ -267,70 +276,6 @@
 <li><p><strong>Software Framework</strong>: A collection of software for building applications in a specific domain. The framework defines the interfaces between the software components, provides example applications that can be developed using the provided software, and represents a clear set of interfaces. The software can be extended to build other applications.</p></li>
 </ol>
 </div>
-<div class="section" id="overview">
-<h2><span class="section-number">2.4. </span>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h2>
-<p>A Level 1 diagram showing the system context for the SimCenter applications, i.e., how it fits in the world,
-is shown in <a class="reference internal" href="#architecture-figcontext"><span class="std std-numref">Fig. 2.4.5</span></a>. It shows SimCenter applications (EE-UQ, WE-UQ, HydroUQ, PBE, R2D) as a box in the center surrounded by the user and the user’s systems. The SimCenter applications allow a user to create and run scientific workflow applications; the data for the applications may be obtained from the web or DataDepot. The workflow applications are run on either the local desktop or on some HPC at <a class="reference external" href="https://designsafe-ci.org">DesignSafe</a>.</p>
-<div class="align-center figure" id="id3">
-<span id="architecture-figcontext"></span><a class="reference internal image-reference" href="../../../../_images/context.png"><img alt="../../../../_images/context.png" src="../../../../_images/context.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.5 </span><span class="caption-text">System context diagram for SimCenter applications.</span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
-</div>
-<p>Given how SimCenter applications fit in with the environment, a level 2 diagram demonstrates how the
-SimCenter applications are broken into high-level components. The SimCenter applications are, as shown in
-<a class="reference internal" href="#architecture-figcontainer"><span class="std std-numref">Fig. 2.4.6</span></a>, split into two components: A front-end UI and a back-end application that runs the workflow. The front-end applications are desktop applications written using the cross-platform <a class="reference external" href="https://www.qt.io/product/framework">Qt framework</a>. The back end is an application that processes the input from the front end, which comes in the form of a JSON file, creates a workflow, and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to the NHE community through DesignSafe.</p>
-<div class="align-center figure" id="id4">
-<span id="architecture-figcontainer"></span><a class="reference internal image-reference" href="../../../../_images/container.png"><img alt="../../../../_images/container.png" src="../../../../_images/container.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.6 </span><span class="caption-text">System container diagram for SimCenter applications.</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
-</div>
-<p>Two level 3 diagrams are now presented, which break up the two containers into the major building blocks or
-components in C4 terminology. In <a class="reference internal" href="#architecture-figcomponentfront"><span class="std std-numref">Fig. 2.4.7</span></a>, the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the jigsaw puzzle analogy, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece. For the chosen application, they provide the inputs. When the inputs are all provided, the user can choose to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen, the widgets may subsequently interact with web services through HTTPS requests or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.</p>
-<div class="align-center figure" id="id5">
-<span id="architecture-figcomponentfront"></span><a class="reference internal image-reference" href="../../../../_images/componentFront.png"><img alt="../../../../_images/componentFront.png" src="../../../../_images/componentFront.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.7 </span><span class="caption-text">Component diagram for front-end UI.</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
-</div>
-<p>The component diagram for the back-end application shown in <a class="reference internal" href="#architecture-figcomponentback"><span class="std std-numref">Fig. 2.4.8</span></a>, shows that the back-end comprises several component applications. The application <code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the application that parses the input from the front end, sets up the workflow by creating a <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script and then launches the UQ engine. The choice of UQ Engine and applications to run in the workflow is determined from the data passed from the UI and information contained in a file, <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code>. The <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code> file is a file that maps the applications specified in the output from the UI with a specific application contained on the users’ local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> file is created, control is passed to a UQ engine, which repeatedly runs the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> to generate the results. In running the workflow, some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the back-end application running locally or remotely on an HPC at DesignSafe.</p>
-<div class="align-center figure" id="id6">
-<span id="architecture-figcomponentback"></span><a class="reference internal image-reference" href="../../../../_images/componentBack.png"><img alt="../../../../_images/componentBack.png" src="../../../../_images/componentBack.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.8 </span><span class="caption-text">Component diagram for Backend Application.</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
-</div>
-<div class="admonition note">
-<p class="admonition-title">Note</p>
-<p><code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the back-end application for the EE-UQ, WE-UQ, Hydro-UQ, and PBE applications. For R2D, the back-end application is <code class="docutils literal notranslate"><span class="pre">R2D_Workflow.py</span></code>.</p>
-</div>
-<p>The interaction between the front-end and the back-end is best understood by looking at the sequence of events when the user presses the <code class="docutils literal notranslate"><span class="pre">Run</span></code> button. As shown in the figure below, the UI application will first perform several steps:</p>
-<ol class="arabic simple">
-<li><p>It will create a temporary directory in the Documents folder named <code class="docutils literal notranslate"><span class="pre">tmp.SimCenter</span></code>, and inside <code class="docutils literal notranslate"><span class="pre">tmp.SimCenter</span></code> will create another directory <code class="docutils literal notranslate"><span class="pre">templatedir</span></code>.</p></li>
-<li><p>It will then run through all the currently selected widgets and invoke the <code class="docutils literal notranslate"><span class="pre">copyFiles()</span></code> method, telling these widgets to copy all files needed during the workflow to the <code class="docutils literal notranslate"><span class="pre">templatedir</span></code> directory.</p></li>
-<li><p>It will then create a JSON file and will run through the currently selected widgets and on each invokes the methods <code class="docutils literal notranslate"><span class="pre">outputToJSON()</span></code> and <code class="docutils literal notranslate"><span class="pre">outputAppDataToJSON</span></code>, these telling the application to augment the JSON file with the inputs the user has provided in the widget and also the name of the widget.</p></li>
-<li><p>The UI will start the back-end application and spin until the back-end application returns with a completion signal.</p></li>
-</ol>
-<p>Now that the UI has been handed over to the back-end application, the back-end application will perform the following:</p>
-<ol class="arabic simple" start="5">
-<li><p>Open the output file from the UI and parse it to obtain the name of the application to run and the arguments to run the application with. Open up another file, the <code class="docutils literal notranslate"><span class="pre">WorkflowApplications.json</span></code> file, contained with the application to determine, given the application name, the full path to the executable to be invoked. It will create in <code class="docutils literal notranslate"><span class="pre">templatedir</span></code> a file named <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code>. When run by the UQ engine, this file is a script file that will generate a file named <code class="docutils literal notranslate"><span class="pre">results.out</span></code>. <code class="docutils literal notranslate"><span class="pre">results.out</span></code> when the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script has completed will contain a single line of space-separated values, one value for each EDP.</p></li>
-<li><p>It will invoke each application with supplied arguments and an additional command-line argument, <code class="docutils literal notranslate"><span class="pre">--getRV</span></code>, to inform the application to process the input file and create any additional random variables and input files needed before the workflow runs.</p></li>
-<li><p>It will then launch the UQengine. The UQengine is typically a pre- and post-processor to an existing UQ engine.</p></li>
-<li><p>The pre-processor takes the JSON input file and creates an input file needed by the actual UQ engine.</p></li>
-<li><p>The pre-processor will launch the UQ application. This application will typically run the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> many times, passing as input to the workflow a file <code class="docutils literal notranslate"><span class="pre">\params</span></code> and obtaining output from the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> a file <code class="docutils literal notranslate"><span class="pre">results.out</span></code>.</p></li>
-<li><p>When done, the engine will output its results.</p></li>
-<li><p>The UQengine will notify the UQpreprocessor that it is done.</p></li>
-<li><p>The UQpreprocessor will notify the femUQ application that it is done.</p></li>
-<li><p>The femUQ application will notify the UI that it is done.</p></li>
-<li><p>The UI will read the results and present them to the user.</p></li>
-</ol>
-<div class="align-center figure" id="id7">
-<span id="architecture-figsequencelocal"></span><a class="reference internal image-reference" href="../../../../_images/sequenceLocal.png"><img alt="../../../../_images/sequenceLocal.png" src="../../../../_images/sequenceLocal.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.9 </span><span class="caption-text">Sequence diagram showing what happens when a Workflow runs Locally</span><a class="headerlink" href="#id7" title="Permalink to this image">¶</a></p>
-</div>
-<p>That is for the case where the computations are performed on the local computer. When the computations are
-performed remotely, the steps are different. The first 8 steps are the same. But now, the UQwrapper will not
-start the UQ engine. Instead, control is returned to the UI. The UI will, as shown in the following: (11)
-Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in
-<a class="reference internal" href="#architecture-figsequenceremote"><span class="std std-numref">Fig. 2.4.10</span></a>. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The <a class="reference external" href="https://tapis-project.org/">TACC tapis</a> interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.</p>
-<div class="align-center figure" id="id8">
-<span id="architecture-figsequenceremote"></span><a class="reference internal image-reference" href="../../../../_images/sequenceRemote.png"><img alt="../../../../_images/sequenceRemote.png" src="../../../../_images/sequenceRemote.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.4.10 </span><span class="caption-text">Sequence diagram showing what happens when a Workflow runs Remotely</span><a class="headerlink" href="#id8" title="Permalink to this image">¶</a></p>
-</div>
-</div>
 </div>
 
 
diff --git a/docs/common/developer_manual/architecture/desktop/architectureLevel4.html b/docs/common/developer_manual/architecture/desktop/architectureLevel4.html
index 8e2855c2..e9b40932 100644
--- a/docs/common/developer_manual/architecture/desktop/architectureLevel4.html
+++ b/docs/common/developer_manual/architecture/desktop/architectureLevel4.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/backendApplications.html b/docs/common/developer_manual/architecture/desktop/backendApplications.html
index 9b8f1bfa..a43f0d8c 100644
--- a/docs/common/developer_manual/architecture/desktop/backendApplications.html
+++ b/docs/common/developer_manual/architecture/desktop/backendApplications.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.2. Backend Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.4. Backend Applications &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="2.2.1. FEM Pre-processors" href="applications/preprocFEM.html" />
-    <link rel="prev" title="2.1.2. Outputs" href="file-types/Outputs.html" />
+    <link rel="next" title="2.2.4.1. FEM Pre-processors" href="applications/preprocFEM.html" />
+    <link rel="prev" title="2.2.3.2. Outputs" href="file-types/Outputs.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,23 +138,25 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2 current"><a class="current reference internal" href="#">2.2. Backend Applications</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="applications/eventApps.html">2.2.3. Event Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="applications/modelingApps.html">2.2.4. Modeling Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="applications/EDPApps.html">2.2.5. EDP Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="applications/simulationApps.html">2.2.6. Simulation Applications</a></li>
-<li class="toctree-l3"><a class="reference internal" href="applications/UQApps.html">2.2.7. UQ Applications</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.4. Backend Applications</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="applications/eventApps.html">2.2.4.3. Event Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="applications/modelingApps.html">2.2.4.4. Modeling Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="applications/EDPApps.html">2.2.4.5. EDP Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="applications/simulationApps.html">2.2.4.6. Simulation Applications</a></li>
+<li class="toctree-l4"><a class="reference internal" href="applications/UQApps.html">2.2.4.7. UQ Applications</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -203,9 +205,11 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.2. </span>Backend Applications</li>
+      <li><span class="section-number">2.2.4. </span>Backend Applications</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -225,7 +229,7 @@
            <div itemprop="articleBody">
             
   <span class="target" id="lblbackendapps"></span><div class="section" id="backend-applications">
-<h1><span class="section-number">2.2. </span>Backend Applications<a class="headerlink" href="#backend-applications" title="Permalink to this heading">¶</a></h1>
+<h1><span class="section-number">2.2.4. </span>Backend Applications<a class="headerlink" href="#backend-applications" title="Permalink to this heading">¶</a></h1>
 <p>The backend applications are categorized by function into the following workflow modules which creates and populate <em>intermediate files</em> used to propagate information from one component application to the next. The modules and their intermediate files are as follows:</p>
 <ol class="arabic simple">
 <li><p><a class="reference internal" href="applications/eventApps.html#lbleventapp"><span class="std std-ref">Event Applications</span></a> - create the EVENT files for every building asset, containing loads corresponding to the hazard event(s).</p></li>
diff --git a/docs/common/developer_manual/architecture/desktop/c4model.html b/docs/common/developer_manual/architecture/desktop/c4model.html
index ffc9aaf8..dfddec20 100644
--- a/docs/common/developer_manual/architecture/desktop/c4model.html
+++ b/docs/common/developer_manual/architecture/desktop/c4model.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.3. C4 Model of Software Architecture &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.5. C4 Model of Software Architecture &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="3. How to Extend" href="../../how_to_extend/desktop/how_to_extend.html" />
-    <link rel="prev" title="2.2.10. Regional Mapping Applications" href="applications/regionalMapApps.html" />
+    <link rel="next" title="3. Verification" href="../../verification/desktop/verification.html" />
+    <link rel="prev" title="2.2.4.10. Regional Mapping Applications" href="applications/regionalMapApps.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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@@ -138,22 +138,24 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="file-types.html">2.1. File Types and Schemas</a></li>
-<li class="toctree-l2"><a class="reference internal" href="backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l2 current"><a class="current reference internal" href="#">2.3. C4 Model of Software Architecture</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="#level-1-context-diagram">2.3.1. Level 1: Context Diagram</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#level-2-container-diagram">2.3.2. Level 2: Container Diagram</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#level-3-component-diagram">2.3.3. Level 3: Component Diagram</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#level-4-code-diagram">2.3.4. Level 4: Code Diagram</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="file-types.html">2.2.3. File Types and Schemas</a></li>
+<li class="toctree-l3"><a class="reference internal" href="backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.5. C4 Model of Software Architecture</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#level-1-context-diagram">2.2.5.1. Level 1: Context Diagram</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#level-2-container-diagram">2.2.5.2. Level 2: Container Diagram</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#level-3-component-diagram">2.2.5.3. Level 3: Component Diagram</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#level-4-code-diagram">2.2.5.4. Level 4: Code Diagram</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="architecture.html#overview">2.4. Overview</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -202,9 +204,11 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.3. </span>C4 Model of Software Architecture</li>
+      <li><span class="section-number">2.2.5. </span>C4 Model of Software Architecture</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -224,43 +228,43 @@
            <div itemprop="articleBody">
             
   <div class="section" id="c4-model-of-software-architecture">
-<span id="lblc4model"></span><h1><span class="section-number">2.3. </span>C4 Model of Software Architecture<a class="headerlink" href="#c4-model-of-software-architecture" title="Permalink to this heading">¶</a></h1>
+<span id="lblc4model"></span><h1><span class="section-number">2.2.5. </span>C4 Model of Software Architecture<a class="headerlink" href="#c4-model-of-software-architecture" title="Permalink to this heading">¶</a></h1>
 <p>The SimCenter workflow systems are aimed at facilitating the use, reuse and extension of common workflows encountered in NHE by a broad range of natural hazards engineering researchers with varying levels of software skills. In order to encourage this use and adoption, this chapter presents the software architecture for the SimCenter framework and EE-UQ app using the <a class="reference external" href="https://c4model.com">C4 model</a>. The C4 model is a graphical approach for documenting software architecture through diagrams that describe and communicate the software architecture at different levels of abstraction. It is a top-down approach that starts at a high level (level 1) showing how a user would interact with the software and drills down through three more levels, with level 4 containing the typical UML diagrams. The choice of the <strong>C4</strong> model was made to provide NHE researchers with a diverse range of software architecture knowledge and an understanding of the software architecture behind SimCenter applications that fit their skill level. The four levels:</p>
 <div class="section" id="level-1-context-diagram">
-<h2><span class="section-number">2.3.1. </span>Level 1: Context Diagram<a class="headerlink" href="#level-1-context-diagram" title="Permalink to this heading">¶</a></h2>
-<p>A Level 1 diagram in <a class="reference internal" href="#c4model-figcontext"><span class="std std-numref">Fig. 2.3.1.2</span></a> shows the system context for the SimCenter applications, i.e. how it fits in the world. In the diagram:
+<h2><span class="section-number">2.2.5.1. </span>Level 1: Context Diagram<a class="headerlink" href="#level-1-context-diagram" title="Permalink to this heading">¶</a></h2>
+<p>A Level 1 diagram in <a class="reference internal" href="#c4model-figcontext"><span class="std std-numref">Fig. 2.2.5.1.1</span></a> shows the system context for the SimCenter applications, i.e. how it fits in the world. In the diagram:
 - the SimCenter computational applications (EE-UQ, WE-UQ, PBE, R2D) are shown in the center surrounded by the user and the systems it interacts with.
 - input data for the SimCenter applications can be obtained either from NHERI datasets accessible on the DesignSafe <a class="reference external" href="https://www.designsafe-ci.org/data/browser/public/designsafe.storage.community/">Data Depot</a>, shown to the right, or from web-based databases, shown to the left.
 - the SimCenter applications can then be run in conjunction with open-source software applications (such as Dakota, FEAP, OpenSees, Python, OpenFOAM, etc.) either on a local desktop, shown below, or using HPC resources on <a class="reference external" href="https://designsafe-ci.org">DesignSafe</a>, shown to the right.</p>
 <div class="align-center figure" id="c4model-figcontext">
 <a class="reference internal image-reference" href="../../../../_images/context.png"><img alt="../../../../_images/context.png" src="../../../../_images/context.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.1.2 </span><span class="caption-text">System context diagram for SimCenter applications.</span><a class="headerlink" href="#c4model-figcontext" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.1.1 </span><span class="caption-text">System context diagram for SimCenter applications.</span><a class="headerlink" href="#c4model-figcontext" title="Permalink to this image">¶</a></p>
 </div>
 </div>
 <div class="section" id="level-2-container-diagram">
-<h2><span class="section-number">2.3.2. </span>Level 2: Container Diagram<a class="headerlink" href="#level-2-container-diagram" title="Permalink to this heading">¶</a></h2>
-<p>A Level 2 diagram in <a class="reference internal" href="#c4model-figcontainer"><span class="std std-numref">Fig. 2.3.2.2</span></a> demonstrates how the SimCenter applications are broken into high-level containers (applications, databases, etc.). Each of the SimCenter applications is broken into two components: A front-end UI and a back-end application that runs the workflow. The front-end is a desktop application written using the cross-platform <a class="reference external" href="https://www.qt.io/product/framework">Qt framework</a>. The back-end is an application that processes the input from the front-end, which comes in the form of a JSON file, creates a workflow and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to NHE community through DesignSafe.</p>
+<h2><span class="section-number">2.2.5.2. </span>Level 2: Container Diagram<a class="headerlink" href="#level-2-container-diagram" title="Permalink to this heading">¶</a></h2>
+<p>A Level 2 diagram in <a class="reference internal" href="#c4model-figcontainer"><span class="std std-numref">Fig. 2.2.5.2.1</span></a> demonstrates how the SimCenter applications are broken into high-level containers (applications, databases, etc.). Each of the SimCenter applications is broken into two components: A front-end UI and a back-end application that runs the workflow. The front-end is a desktop application written using the cross-platform <a class="reference external" href="https://www.qt.io/product/framework">Qt framework</a>. The back-end is an application that processes the input from the front-end, which comes in the form of a JSON file, creates a workflow and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to NHE community through DesignSafe.</p>
 <div class="align-center figure" id="c4model-figcontainer">
 <a class="reference internal image-reference" href="../../../../_images/container.png"><img alt="../../../../_images/container.png" src="../../../../_images/container.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.2.2 </span><span class="caption-text">System container diagram for SimCenter applications.</span><a class="headerlink" href="#c4model-figcontainer" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.2.1 </span><span class="caption-text">System container diagram for SimCenter applications.</span><a class="headerlink" href="#c4model-figcontainer" title="Permalink to this image">¶</a></p>
 </div>
 </div>
 <div class="section" id="level-3-component-diagram">
-<h2><span class="section-number">2.3.3. </span>Level 3: Component Diagram<a class="headerlink" href="#level-3-component-diagram" title="Permalink to this heading">¶</a></h2>
+<h2><span class="section-number">2.2.5.3. </span>Level 3: Component Diagram<a class="headerlink" href="#level-3-component-diagram" title="Permalink to this heading">¶</a></h2>
 <p>Two level 3 diagrams are now presented which break up the two containers into the major building blocks or
-components in C4 terminology. In <a class="reference internal" href="#c4model-figcomponentfront"><span class="std std-numref">Fig. 2.3.3.2</span></a> the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the analogy of a jigsaw puzzle, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece, and for the chosen application, they provide the inputs. When the inputs are all provided, the user can select to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen the widgets may subsequently interact with web services through HTTPS requests, or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.</p>
+components in C4 terminology. In <a class="reference internal" href="#c4model-figcomponentfront"><span class="std std-numref">Fig. 2.2.5.3.1</span></a> the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the analogy of a jigsaw puzzle, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece, and for the chosen application, they provide the inputs. When the inputs are all provided, the user can select to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen the widgets may subsequently interact with web services through HTTPS requests, or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.</p>
 <div class="align-center figure" id="c4model-figcomponentfront">
 <a class="reference internal image-reference" href="../../../../_images/componentFront.png"><img alt="../../../../_images/componentFront.png" src="../../../../_images/componentFront.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.3.2 </span><span class="caption-text">Component diagram for front end UI.</span><a class="headerlink" href="#c4model-figcomponentfront" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.3.1 </span><span class="caption-text">Component diagram for front end UI.</span><a class="headerlink" href="#c4model-figcomponentfront" title="Permalink to this image">¶</a></p>
 </div>
-<p>The component diagram for the backend application shown in <a class="reference internal" href="#c4model-figcomponentback"><span class="std std-numref">Fig. 2.3.3.3</span></a>, shows that the backend is made up of a number of component applications. The application <code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the application that parses the input from the front end, sets up the workflow by creating a <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script and then launches the UQ engine. Which UQ Engine and which applications to run in the workflow, is determined from the data passed from the UI and information contained in a file, <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code>. The <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code> file is a file that maps the applications specified in the output from the UI with a specific application contained on the user’s local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> file is created, control is passed to a UQ engine, which repeatedly runs the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> to generate the results. In running the workflow some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the backend application running locally or remotely on an HPC at DesignSafe.</p>
+<p>The component diagram for the backend application shown in <a class="reference internal" href="#c4model-figcomponentback"><span class="std std-numref">Fig. 2.2.5.3.2</span></a>, shows that the backend is made up of a number of component applications. The application <code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the application that parses the input from the front end, sets up the workflow by creating a <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script and then launches the UQ engine. Which UQ Engine and which applications to run in the workflow, is determined from the data passed from the UI and information contained in a file, <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code>. The <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code> file is a file that maps the applications specified in the output from the UI with a specific application contained on the user’s local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> file is created, control is passed to a UQ engine, which repeatedly runs the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> to generate the results. In running the workflow some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the backend application running locally or remotely on an HPC at DesignSafe.</p>
 <div class="align-center figure" id="c4model-figcomponentback">
 <a class="reference internal image-reference" href="../../../../_images/componentBack.png"><img alt="../../../../_images/componentBack.png" src="../../../../_images/componentBack.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.3.3 </span><span class="caption-text">Component diagram for Backend Application.</span><a class="headerlink" href="#c4model-figcomponentback" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.3.2 </span><span class="caption-text">Component diagram for Backend Application.</span><a class="headerlink" href="#c4model-figcomponentback" title="Permalink to this image">¶</a></p>
 </div>
 </div>
 <div class="section" id="level-4-code-diagram">
-<h2><span class="section-number">2.3.4. </span>Level 4: Code Diagram<a class="headerlink" href="#level-4-code-diagram" title="Permalink to this heading">¶</a></h2>
+<h2><span class="section-number">2.2.5.4. </span>Level 4: Code Diagram<a class="headerlink" href="#level-4-code-diagram" title="Permalink to this heading">¶</a></h2>
 <p>To facilitate the development of the different SimCenter applications and to encourage their reuse and extension by other NHE researchers, the SimCenter is providing the NHE community with a software framework for building such applications. From this framework, the SimCenter is building the applications, of which EE-UQ app is but one, that it releases. These individual applications are built from the components of the framework. The components of the SimCenter are grouped, as shown in the figure below, into the following components:</p>
 <ol class="arabic simple">
 <li><p><strong>Cloud</strong>: applications/libraries for communicating with remote web services to launch and monitor applications on HPC resources and to upload and download files from the filesystems of such resources.</p></li>
@@ -297,15 +301,15 @@ <h2><span class="section-number">2.3.4. </span>Level 4: Code Diagram<a class="he
 </ol>
 <div class="align-center figure" id="c4model-figsequencelocal">
 <a class="reference internal image-reference" href="../../../../_images/sequenceLocal.png"><img alt="../../../../_images/sequenceLocal.png" src="../../../../_images/sequenceLocal.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.4.2 </span><span class="caption-text">Sequence diagram showing what happens when a workflow runs locally.</span><a class="headerlink" href="#c4model-figsequencelocal" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.4.1 </span><span class="caption-text">Sequence diagram showing what happens when a workflow runs locally.</span><a class="headerlink" href="#c4model-figsequencelocal" title="Permalink to this image">¶</a></p>
 </div>
 <p>That is for the case where the computations are performed on the local computer. When the computations are
 performed remotely the steps are different. The first 8 steps are the same. But now the UQwrapper will not
 start the UQ engine. Instead, control is returned to the UI. The UI will, as shown in the following: (11)
-Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in <a class="reference internal" href="#c4model-figsequenceremote"><span class="std std-numref">Fig. 2.3.4.3</span></a>. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The <a class="reference external" href="https://tapis-project.org/">TACC tapis</a> interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.</p>
+Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in <a class="reference internal" href="#c4model-figsequenceremote"><span class="std std-numref">Fig. 2.2.5.4.2</span></a>. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The <a class="reference external" href="https://tapis-project.org/">TACC tapis</a> interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.</p>
 <div class="align-center figure" id="c4model-figsequenceremote">
 <a class="reference internal image-reference" href="../../../../_images/sequenceRemote.png"><img alt="../../../../_images/sequenceRemote.png" src="../../../../_images/sequenceRemote.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.3.4.3 </span><span class="caption-text">Sequence diagram showing what happens when a workflow runs remotely.</span><a class="headerlink" href="#c4model-figsequenceremote" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.2.5.4.2 </span><span class="caption-text">Sequence diagram showing what happens when a workflow runs remotely.</span><a class="headerlink" href="#c4model-figsequenceremote" title="Permalink to this image">¶</a></p>
 </div>
 </div>
 </div>
diff --git a/docs/common/developer_manual/architecture/desktop/dynamicDiagrams.html b/docs/common/developer_manual/architecture/desktop/dynamicDiagrams.html
index 77f84ed9..f7dde59b 100644
--- a/docs/common/developer_manual/architecture/desktop/dynamicDiagrams.html
+++ b/docs/common/developer_manual/architecture/desktop/dynamicDiagrams.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/file-types.html b/docs/common/developer_manual/architecture/desktop/file-types.html
index 12844421..3318777d 100644
--- a/docs/common/developer_manual/architecture/desktop/file-types.html
+++ b/docs/common/developer_manual/architecture/desktop/file-types.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.1. File Types and Schemas &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.3. File Types and Schemas &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="2.1.1. Inputs" href="file-types/Inputs.html" />
-    <link rel="prev" title="2. Software Architecture" href="architecture.html" />
+    <link rel="next" title="2.2.3.1. Inputs" href="file-types/Inputs.html" />
+    <link rel="prev" title="2.2.1. Overview" href="overview.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,20 +138,22 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2 current"><a class="current reference internal" href="#">2.1. File Types and Schemas</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="file-types/Inputs.html">2.1.1. Inputs</a></li>
-<li class="toctree-l3"><a class="reference internal" href="file-types/Outputs.html">2.1.2. Outputs</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.3. File Types and Schemas</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="file-types/Inputs.html">2.2.3.1. Inputs</a></li>
+<li class="toctree-l4"><a class="reference internal" href="file-types/Outputs.html">2.2.3.2. Outputs</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l2"><a class="reference internal" href="c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="architecture.html#overview">2.4. Overview</a></li>
+<li class="toctree-l3"><a class="reference internal" href="backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3"><a class="reference internal" href="c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -200,9 +202,11 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+          <li><a href="architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.1. </span>File Types and Schemas</li>
+      <li><span class="section-number">2.2.3. </span>File Types and Schemas</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -222,13 +226,13 @@
            <div itemprop="articleBody">
             
   <div class="section" id="file-types-and-schemas">
-<h1><span class="section-number">2.1. </span>File Types and Schemas<a class="headerlink" href="#file-types-and-schemas" title="Permalink to this heading">¶</a></h1>
+<span id="lblfiletypes"></span><h1><span class="section-number">2.2.3. </span>File Types and Schemas<a class="headerlink" href="#file-types-and-schemas" title="Permalink to this heading">¶</a></h1>
 <p>In order to run an instance of the workflow, users must prepare the <strong>input files</strong> according to a standard file schema (the file type, structure, and contents). If input files deviate from this schema, then the workflow will return errors. Upon completion of the workflow, <strong>output files</strong> containing a summary of simulation results are produced.</p>
 <p>For a guide on formatting input files and reading output files, refer to the following pages:</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="file-types/Inputs.html">2.1.1. Inputs</a></li>
-<li class="toctree-l1"><a class="reference internal" href="file-types/Outputs.html">2.1.2. Outputs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-types/Inputs.html">2.2.3.1. Inputs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-types/Outputs.html">2.2.3.2. Outputs</a></li>
 </ul>
 </div>
 </div>
diff --git a/docs/common/developer_manual/architecture/desktop/file-types/Inputs.html b/docs/common/developer_manual/architecture/desktop/file-types/Inputs.html
index 98b7765b..855f4e4b 100644
--- a/docs/common/developer_manual/architecture/desktop/file-types/Inputs.html
+++ b/docs/common/developer_manual/architecture/desktop/file-types/Inputs.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.1.1. Inputs &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.3.1. Inputs &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.1.2. Outputs" href="Outputs.html" />
-    <link rel="prev" title="2.1. File Types and Schemas" href="../file-types.html" />
+    <link rel="next" title="2.2.3.2. Outputs" href="Outputs.html" />
+    <link rel="prev" title="2.2.3. File Types and Schemas" href="../file-types.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,28 +138,22 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.1.1. Inputs</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#configuration-file">2.1.1.1. Configuration File</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#building-source-file">2.1.1.2. Building Source File</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#transportation-network-source-file-option-1">2.1.1.3. Transportation Network Source File Option 1</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#model-file">2.1.1.4. Model File</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#edp-specifications-file">2.1.1.5. EDP specifications file</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#event-files">2.1.1.6. Event Files</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a><ul class="current">
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.3.1. Inputs</a></li>
+<li class="toctree-l4"><a class="reference internal" href="Outputs.html">2.2.3.2. Outputs</a></li>
 </ul>
 </li>
-<li class="toctree-l3"><a class="reference internal" href="Outputs.html">2.1.2. Outputs</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -208,11 +202,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../file-types.html"><span class="section-number">2.1. </span>File Types and Schemas</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.1.1. </span>Inputs</li>
+          <li><a href="../file-types.html"><span class="section-number">2.2.3. </span>File Types and Schemas</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.3.1. </span>Inputs</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -232,10 +228,10 @@
            <div itemprop="articleBody">
             
   <div class="section" id="inputs">
-<span id="lbluserdefinputs"></span><h1><span class="section-number">2.1.1. </span>Inputs<a class="headerlink" href="#inputs" title="Permalink to this heading">¶</a></h1>
+<span id="lbluserdefinputs"></span><h1><span class="section-number">2.2.3.1. </span>Inputs<a class="headerlink" href="#inputs" title="Permalink to this heading">¶</a></h1>
 <p>The following files must be provided by the user to execute the workflow.</p>
 <div class="section" id="configuration-file">
-<h2><span class="section-number">2.1.1.1. </span>Configuration File<a class="headerlink" href="#configuration-file" title="Permalink to this heading">¶</a></h2>
+<h2>Configuration File<a class="headerlink" href="#configuration-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 33%" />
@@ -302,7 +298,7 @@ <h2><span class="section-number">2.1.1.1. </span>Configuration File<a class="hea
 </table>
 </div>
 <div class="section" id="building-source-file">
-<h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="headerlink" href="#building-source-file" title="Permalink to this heading">¶</a></h2>
+<h2>Building Source File<a class="headerlink" href="#building-source-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 50%" />
@@ -342,7 +338,7 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 </div>
 <p>The header schema, followed by an example input, is provided. Definitions for the keywords are given in the <a class="reference external" href="https://docs.google.com/spreadsheets/d/1bYV48cSmjQ6DUpc9eTKy2jrWLVEHMAuqjJnkYIsKetQ/edit#gid=0">Custom Inventory sheet</a>.</p>
 <table class="docutils align-center" id="id7">
-<caption><span class="caption-number">Table 2.1.1.1 </span><span class="caption-text">InputDataSchema.csv</span><a class="headerlink" href="#id7" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.1.1 </span><span class="caption-text">InputDataSchema.csv</span><a class="headerlink" href="#id7" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 4%" />
 <col style="width: 4%" />
@@ -466,14 +462,14 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 </tbody>
 </table>
 <div class="section" id="transportation-network-source-file-option-1">
-<span id="lbltransportationinputoption1"></span><h2><span class="section-number">2.1.1.3. </span>Transportation Network Source File Option 1<a class="headerlink" href="#transportation-network-source-file-option-1" title="Permalink to this heading">¶</a></h2>
+<span id="lbltransportationinputoption1"></span><h2>Transportation Network Source File Option 1<a class="headerlink" href="#transportation-network-source-file-option-1" title="Permalink to this heading">¶</a></h2>
 </div>
 <p>A JSON file containing highway transportation roadways, bridges, and tunnels for the response simulation and damage/loss estimation steps of the workflow. This file contains all the information necessary for constructing AIM files for each bridge, tunnel, and roadway. The JSON file must contain the “nodes” object and at lease one of the “hwy_bridges”, “hwy_tunnels”, and “roadways” object. Involved key-item pairs are:</p>
 <ul class="simple">
 <li><p>“hwy_bridges”: A JSON array of JSON Objects, each containing the following key/item pairs</p></li>
 </ul>
 <table class="docutils align-center" id="id8">
-<caption><span class="caption-number">Table 2.1.1.2 </span><span class="caption-text">InputDataSchemaBridge.csv</span><a class="headerlink" href="#id8" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.1.2 </span><span class="caption-text">InputDataSchemaBridge.csv</span><a class="headerlink" href="#id8" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 11%" />
 <col style="width: 11%" />
@@ -534,7 +530,7 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 <li><p>“hwy_tunnels”: A JSON array of JSON Objects, each containing the following key/item pairs</p></li>
 </ul>
 <table class="docutils align-center" id="id9">
-<caption><span class="caption-number">Table 2.1.1.3 </span><span class="caption-text">InputDataSchemaTunnel.csv</span><a class="headerlink" href="#id9" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.1.3 </span><span class="caption-text">InputDataSchemaTunnel.csv</span><a class="headerlink" href="#id9" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 20%" />
 <col style="width: 20%" />
@@ -575,7 +571,7 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 <li><p>“roadways”: A JSON array of JSON Objects, each containing the following key/item pairs</p></li>
 </ul>
 <table class="docutils align-center" id="id10">
-<caption><span class="caption-number">Table 2.1.1.4 </span><span class="caption-text">InputDataSchemaRoadway.csv</span><a class="headerlink" href="#id10" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.1.4 </span><span class="caption-text">InputDataSchemaRoadway.csv</span><a class="headerlink" href="#id10" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 17%" />
 <col style="width: 17%" />
@@ -621,7 +617,7 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 <li><p>“nodes”: A long JSON Objects containing the following key/item pairs</p></li>
 </ul>
 <table class="docutils align-center" id="id11">
-<caption><span class="caption-number">Table 2.1.1.5 </span><span class="caption-text">InputDataSchemaTransportNode.csv</span><a class="headerlink" href="#id11" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.1.5 </span><span class="caption-text">InputDataSchemaTransportNode.csv</span><a class="headerlink" href="#id11" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 33%" />
 <col style="width: 33%" />
@@ -655,7 +651,7 @@ <h2><span class="section-number">2.1.1.2. </span>Building Source File<a class="h
 </tbody>
 </table>
 <div class="section" id="model-file">
-<h2><span class="section-number">2.1.1.4. </span>Model File<a class="headerlink" href="#model-file" title="Permalink to this heading">¶</a></h2>
+<h2>Model File<a class="headerlink" href="#model-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 100%" />
@@ -667,7 +663,7 @@ <h2><span class="section-number">2.1.1.4. </span>Model File<a class="headerlink"
 </table>
 </div>
 <div class="section" id="edp-specifications-file">
-<h2><span class="section-number">2.1.1.5. </span>EDP specifications file<a class="headerlink" href="#edp-specifications-file" title="Permalink to this heading">¶</a></h2>
+<h2>EDP specifications file<a class="headerlink" href="#edp-specifications-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 100%" />
@@ -679,7 +675,7 @@ <h2><span class="section-number">2.1.1.5. </span>EDP specifications file<a class
 </table>
 </div>
 <div class="section" id="event-files">
-<h2><span class="section-number">2.1.1.6. </span>Event Files<a class="headerlink" href="#event-files" title="Permalink to this heading">¶</a></h2>
+<h2>Event Files<a class="headerlink" href="#event-files" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 25%" />
diff --git a/docs/common/developer_manual/architecture/desktop/file-types/Outputs.html b/docs/common/developer_manual/architecture/desktop/file-types/Outputs.html
index a7ddd395..c50808ec 100644
--- a/docs/common/developer_manual/architecture/desktop/file-types/Outputs.html
+++ b/docs/common/developer_manual/architecture/desktop/file-types/Outputs.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>2.1.2. Outputs &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.2.3.2. Outputs &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="2.2. Backend Applications" href="../backendApplications.html" />
-    <link rel="prev" title="2.1.1. Inputs" href="Inputs.html" />
+    <link rel="next" title="2.2.4. Backend Applications" href="../backendApplications.html" />
+    <link rel="prev" title="2.2.3.1. Inputs" href="Inputs.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -138,25 +138,22 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../architecture.html">2. Software Architecture</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../file-types.html">2.1. File Types and Schemas</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="Inputs.html">2.1.1. Inputs</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">2.1.2. Outputs</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#edp-output-file">2.1.2.1. EDP Output File</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#dm-output-file">2.1.2.2. DM Output File</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#dv-output-file">2.1.2.3. DV Output File</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="../file-types.html">2.2.3. File Types and Schemas</a><ul class="current">
+<li class="toctree-l4"><a class="reference internal" href="Inputs.html">2.2.3.1. Inputs</a></li>
+<li class="toctree-l4 current"><a class="current reference internal" href="#">2.2.3.2. Outputs</a></li>
 </ul>
 </li>
+<li class="toctree-l3"><a class="reference internal" href="../backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../backendApplications.html">2.2. Backend Applications</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../c4model.html">2.3. C4 Model of Software Architecture</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../architecture.html#overview">2.4. Overview</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -205,11 +202,13 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../architecture.html"><span class="section-number">2. </span>Software Architecture</a> &raquo;</li>
+          <li><a href="../../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
         
-          <li><a href="../file-types.html"><span class="section-number">2.1. </span>File Types and Schemas</a> &raquo;</li>
+          <li><a href="../architecture.html"><span class="section-number">2.2. </span>Software Architecture</a> &raquo;</li>
         
-      <li><span class="section-number">2.1.2. </span>Outputs</li>
+          <li><a href="../file-types.html"><span class="section-number">2.2.3. </span>File Types and Schemas</a> &raquo;</li>
+        
+      <li><span class="section-number">2.2.3.2. </span>Outputs</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -229,10 +228,10 @@
            <div itemprop="articleBody">
             
   <div class="section" id="outputs">
-<span id="lbloutputs"></span><h1><span class="section-number">2.1.2. </span>Outputs<a class="headerlink" href="#outputs" title="Permalink to this heading">¶</a></h1>
+<span id="lbloutputs"></span><h1><span class="section-number">2.2.3.2. </span>Outputs<a class="headerlink" href="#outputs" title="Permalink to this heading">¶</a></h1>
 <p>After DL assessment is complete, the workflow collects the EDP.csv, DM.csv, and DV.csv files produced for each building asset and aggregates the results into single output files. When run locally, the workflow returns the output in a CSV format which is located in the <em>results</em> folder. When run remotely, the workflow returns the output in an HDF format which is located in the job archive. The HDF files may be converted into CSV format as a post-processing step.</p>
 <div class="section" id="edp-output-file">
-<h2><span class="section-number">2.1.2.1. </span>EDP Output File<a class="headerlink" href="#edp-output-file" title="Permalink to this heading">¶</a></h2>
+<h2>EDP Output File<a class="headerlink" href="#edp-output-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 33%" />
@@ -285,7 +284,7 @@ <h2><span class="section-number">2.1.2.1. </span>EDP Output File<a class="header
 </div>
 <p>The header schema, followed by an example output, is provided:</p>
 <table class="docutils align-center" id="id1">
-<caption><span class="caption-number">Table 2.1.2.1 </span><span class="caption-text">OutputEDPSchema.csv</span><a class="headerlink" href="#id1" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.2.1 </span><span class="caption-text">OutputEDPSchema.csv</span><a class="headerlink" href="#id1" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 8%" />
 <col style="width: 8%" />
@@ -377,7 +376,7 @@ <h2><span class="section-number">2.1.2.1. </span>EDP Output File<a class="header
 </tbody>
 </table>
 <div class="section" id="dm-output-file">
-<h2><span class="section-number">2.1.2.2. </span>DM Output File<a class="headerlink" href="#dm-output-file" title="Permalink to this heading">¶</a></h2>
+<h2>DM Output File<a class="headerlink" href="#dm-output-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 33%" />
@@ -412,7 +411,7 @@ <h2><span class="section-number">2.1.2.2. </span>DM Output File<a class="headerl
 </div>
 <p>The header schema, followed by an example output, is provided:</p>
 <table class="docutils align-center" id="id2">
-<caption><span class="caption-number">Table 2.1.2.2 </span><span class="caption-text">OutputDMSchema.csv</span><a class="headerlink" href="#id2" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.2.2 </span><span class="caption-text">OutputDMSchema.csv</span><a class="headerlink" href="#id2" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 4%" />
 <col style="width: 4%" />
@@ -540,7 +539,7 @@ <h2><span class="section-number">2.1.2.2. </span>DM Output File<a class="headerl
 </tbody>
 </table>
 <div class="section" id="dv-output-file">
-<h2><span class="section-number">2.1.2.3. </span>DV Output File<a class="headerlink" href="#dv-output-file" title="Permalink to this heading">¶</a></h2>
+<h2>DV Output File<a class="headerlink" href="#dv-output-file" title="Permalink to this heading">¶</a></h2>
 <table class="docutils align-default">
 <colgroup>
 <col style="width: 33%" />
@@ -602,7 +601,7 @@ <h2><span class="section-number">2.1.2.3. </span>DV Output File<a class="headerl
 </div>
 <p>The header schema, followed by an example output, is provided:</p>
 <table class="docutils align-center" id="id3">
-<caption><span class="caption-number">Table 2.1.2.3 </span><span class="caption-text">OutputDVSchema.csv</span><a class="headerlink" href="#id3" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 2.2.3.2.3 </span><span class="caption-text">OutputDVSchema.csv</span><a class="headerlink" href="#id3" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 2%" />
 <col style="width: 2%" />
diff --git a/docs/common/developer_manual/architecture/desktop/overview.html b/docs/common/developer_manual/architecture/desktop/overview.html
new file mode 100644
index 00000000..3ae477e6
--- /dev/null
+++ b/docs/common/developer_manual/architecture/desktop/overview.html
@@ -0,0 +1,392 @@
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+<p class="caption" role="heading"><span class="caption-text">User Manual</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../user_manual/installation/desktop/installation.html">1. Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../user_manual/usage/desktop/usage.html">2. User Interface</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../user_manual/examples/desktop/examples.html">3. Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../user_manual/troubleshooting/desktop/troubleshooting.html">4. Troubleshooting</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../reqments/EEUQ.html">5. Requirements</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../user_manual/bugs.html">6. Bugs &amp; Feature Requests</a></li>
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+<p class="caption" role="heading"><span class="caption-text">Technical Manual</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../technical_manual/desktop/uqTechnical.html">1. Dakota Methods</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../technical_manual/desktop/SimCenterUQTechnical.html">2. Methods in SimCenterUQ Engine</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../technical_manual/desktop/damping.html">3. Damping Options</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../technical_manual/desktop/spatial_correlation.html">4. Ground Motion Intensity Spatial Correlation Model Options</a></li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="architecture.html">2.2. Software Architecture</a><ul class="current">
+<li class="toctree-l3 current"><a class="current reference internal" href="#">2.2.1. Overview</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="backendApplications.html">2.2.4. Backend Applications</a></li>
+<li class="toctree-l3"><a class="reference internal" href="c4model.html">2.2.5. C4 Model of Software Architecture</a></li>
+</ul>
+</li>
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+  <div class="section" id="overview">
+<span id="lblarchitectureoverview"></span><h1><span class="section-number">2.2.1. </span>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h1>
+<p>A Level 1 diagram showing the system context for the SimCenter applications, i.e., how it fits in the world,
+is shown in <a class="reference internal" href="#architecture-figcontext"><span class="std std-numref">Fig. 2.2.1.1</span></a>. It shows SimCenter applications (EE-UQ, WE-UQ, HydroUQ, PBE, R2D) as a box in the center surrounded by the user and the user’s systems. The SimCenter applications allow a user to create and run scientific workflow applications; the data for the applications may be obtained from the web or DataDepot. The workflow applications are run on either the local desktop or on some HPC at <a class="reference external" href="https://designsafe-ci.org">DesignSafe</a>.</p>
+<div class="align-center figure" id="id1">
+<span id="architecture-figcontext"></span><a class="reference internal image-reference" href="../../../../_images/context.png"><img alt="../../../../_images/context.png" src="../../../../_images/context.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.1 </span><span class="caption-text">System context diagram for SimCenter applications.</span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
+</div>
+<p>Given how SimCenter applications fit in with the environment, a level 2 diagram demonstrates how the
+SimCenter applications are broken into high-level components. The SimCenter applications are, as shown in
+<a class="reference internal" href="#architecture-figcontainer"><span class="std std-numref">Fig. 2.2.1.2</span></a>, split into two components: A front-end UI and a back-end application that runs the workflow. The front-end applications are desktop applications written using the cross-platform <a class="reference external" href="https://www.qt.io/product/framework">Qt framework</a>. The back end is an application that processes the input from the front end, which comes in the form of a JSON file, creates a workflow, and runs it. The workflow applications, written in Python, C, or C++, utilize existing applications where possible and run on either the local desktop machine or on an HPC utilizing resources made available to the NHE community through DesignSafe.</p>
+<div class="align-center figure" id="id2">
+<span id="architecture-figcontainer"></span><a class="reference internal image-reference" href="../../../../_images/container.png"><img alt="../../../../_images/container.png" src="../../../../_images/container.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.2 </span><span class="caption-text">System container diagram for SimCenter applications.</span><a class="headerlink" href="#id2" title="Permalink to this image">¶</a></p>
+</div>
+<p>Two level 3 diagrams are now presented, which break up the two containers into the major building blocks or
+components in C4 terminology. In <a class="reference internal" href="#architecture-figcomponentfront"><span class="std std-numref">Fig. 2.2.1.3</span></a>, the component diagram for the front-end UI is presented. It outlines the interaction between the user and the individual graphical elements (widgets) of the UI. Given the jigsaw puzzle analogy, the user selects which piece of the jigsaw puzzle they are working on in the component selection widget. The widget for the jigsaw piece will then be displayed on the desktop. The user for each jigsaw piece then selects which application to run for that piece. For the chosen application, they provide the inputs. When the inputs are all provided, the user can choose to run the simulations locally or remotely. For jobs that run remotely, the user can download and review previously run simulations. As seen, the widgets may subsequently interact with web services through HTTPS requests or with DesignSafe utilizing TAPIS Restful API through the RemoteService container.</p>
+<div class="align-center figure" id="id3">
+<span id="architecture-figcomponentfront"></span><a class="reference internal image-reference" href="../../../../_images/componentFront.png"><img alt="../../../../_images/componentFront.png" src="../../../../_images/componentFront.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.3 </span><span class="caption-text">Component diagram for front-end UI.</span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
+</div>
+<p>The component diagram for the back-end application shown in <a class="reference internal" href="#architecture-figcomponentback"><span class="std std-numref">Fig. 2.2.1.4</span></a>, shows that the back-end comprises several component applications. The application <code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the application that parses the input from the front end, sets up the workflow by creating a <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script and then launches the UQ engine. The choice of UQ Engine and applications to run in the workflow is determined from the data passed from the UI and information contained in a file, <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code>. The <code class="docutils literal notranslate"><span class="pre">WorkflowApplication.json</span></code> file is a file that maps the applications specified in the output from the UI with a specific application contained on the users’ local machine or at the remote HPC resource, as such it allows the researchers to modify the applications that may be run in the workflow w/o the need to recompile the application. Once the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> file is created, control is passed to a UQ engine, which repeatedly runs the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> to generate the results. In running the workflow, some of the applications will invoke applications not developed to meet the API. For such applications, pre- and post-processors are provided. The figure shows the back-end application running locally or remotely on an HPC at DesignSafe.</p>
+<div class="align-center figure" id="id4">
+<span id="architecture-figcomponentback"></span><a class="reference internal image-reference" href="../../../../_images/componentBack.png"><img alt="../../../../_images/componentBack.png" src="../../../../_images/componentBack.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.4 </span><span class="caption-text">Component diagram for Backend Application.</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
+</div>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p><code class="docutils literal notranslate"><span class="pre">femUQ.py</span></code> is the back-end application for the EE-UQ, WE-UQ, Hydro-UQ, and PBE applications. For R2D, the back-end application is <code class="docutils literal notranslate"><span class="pre">R2D_Workflow.py</span></code>.</p>
+</div>
+<p>The interaction between the front-end and the back-end is best understood by looking at the sequence of events when the user presses the <code class="docutils literal notranslate"><span class="pre">Run</span></code> button. As shown in the figure below, the UI application will first perform several steps:</p>
+<ol class="arabic simple">
+<li><p>It will create a temporary directory in the Documents folder named <code class="docutils literal notranslate"><span class="pre">tmp.SimCenter</span></code>, and inside <code class="docutils literal notranslate"><span class="pre">tmp.SimCenter</span></code> will create another directory <code class="docutils literal notranslate"><span class="pre">templatedir</span></code>.</p></li>
+<li><p>It will then run through all the currently selected widgets and invoke the <code class="docutils literal notranslate"><span class="pre">copyFiles()</span></code> method, telling these widgets to copy all files needed during the workflow to the <code class="docutils literal notranslate"><span class="pre">templatedir</span></code> directory.</p></li>
+<li><p>It will then create a JSON file and will run through the currently selected widgets and on each invokes the methods <code class="docutils literal notranslate"><span class="pre">outputToJSON()</span></code> and <code class="docutils literal notranslate"><span class="pre">outputAppDataToJSON</span></code>, these telling the application to augment the JSON file with the inputs the user has provided in the widget and also the name of the widget.</p></li>
+<li><p>The UI will start the back-end application and spin until the back-end application returns with a completion signal.</p></li>
+</ol>
+<p>Now that the UI has been handed over to the back-end application, the back-end application will perform the following:</p>
+<ol class="arabic simple" start="5">
+<li><p>Open the output file from the UI and parse it to obtain the name of the application to run and the arguments to run the application with. Open up another file, the <code class="docutils literal notranslate"><span class="pre">WorkflowApplications.json</span></code> file, contained with the application to determine, given the application name, the full path to the executable to be invoked. It will create in <code class="docutils literal notranslate"><span class="pre">templatedir</span></code> a file named <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code>. When run by the UQ engine, this file is a script file that will generate a file named <code class="docutils literal notranslate"><span class="pre">results.out</span></code>. <code class="docutils literal notranslate"><span class="pre">results.out</span></code> when the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> script has completed will contain a single line of space-separated values, one value for each EDP.</p></li>
+<li><p>It will invoke each application with supplied arguments and an additional command-line argument, <code class="docutils literal notranslate"><span class="pre">--getRV</span></code>, to inform the application to process the input file and create any additional random variables and input files needed before the workflow runs.</p></li>
+<li><p>It will then launch the UQengine. The UQengine is typically a pre- and post-processor to an existing UQ engine.</p></li>
+<li><p>The pre-processor takes the JSON input file and creates an input file needed by the actual UQ engine.</p></li>
+<li><p>The pre-processor will launch the UQ application. This application will typically run the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> many times, passing as input to the workflow a file <code class="docutils literal notranslate"><span class="pre">\params</span></code> and obtaining output from the <code class="docutils literal notranslate"><span class="pre">workflow_driver</span></code> a file <code class="docutils literal notranslate"><span class="pre">results.out</span></code>.</p></li>
+<li><p>When done, the engine will output its results.</p></li>
+<li><p>The UQengine will notify the UQpreprocessor that it is done.</p></li>
+<li><p>The UQpreprocessor will notify the femUQ application that it is done.</p></li>
+<li><p>The femUQ application will notify the UI that it is done.</p></li>
+<li><p>The UI will read the results and present them to the user.</p></li>
+</ol>
+<div class="align-center figure" id="id5">
+<span id="architecture-figsequencelocal"></span><a class="reference internal image-reference" href="../../../../_images/sequenceLocal.png"><img alt="../../../../_images/sequenceLocal.png" src="../../../../_images/sequenceLocal.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.5 </span><span class="caption-text">Sequence diagram showing what happens when a Workflow runs Locally</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
+</div>
+<p>That is for the case where the computations are performed on the local computer. When the computations are
+performed remotely, the steps are different. The first 8 steps are the same. But now, the UQwrapper will not
+start the UQ engine. Instead, control is returned to the UI. The UI will, as shown in the following: (11)
+Compress the temporary folder. (12) Send the compressed folder to the remote HPC, shown in
+<a class="reference internal" href="#architecture-figsequenceremote"><span class="std std-numref">Fig. 2.2.1.6</span></a>. (13) Start an application to perform the computations. All the remote data transfer and application invocation is down through a cloud service. The <a class="reference external" href="https://tapis-project.org/">TACC tapis</a> interface is used to provide SimCenter users with access to the TACC HPC resources through the DesignSafe portal.</p>
+<div class="align-center figure" id="id6">
+<span id="architecture-figsequenceremote"></span><a class="reference internal image-reference" href="../../../../_images/sequenceRemote.png"><img alt="../../../../_images/sequenceRemote.png" src="../../../../_images/sequenceRemote.png" style="width: 800px;" /></a>
+<p class="caption"><span class="caption-number">Fig. 2.2.1.6 </span><span class="caption-text">Sequence diagram showing what happens when a Workflow runs Remotely</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
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diff --git a/docs/common/developer_manual/architecture/desktop/run-manually.html b/docs/common/developer_manual/architecture/desktop/run-manually.html
index 5ac0f4a9..d9bd4af5 100644
--- a/docs/common/developer_manual/architecture/desktop/run-manually.html
+++ b/docs/common/developer_manual/architecture/desktop/run-manually.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/run-manually/runLocal.html b/docs/common/developer_manual/architecture/desktop/run-manually/runLocal.html
index 0ff4f0c9..1e6d209e 100644
--- a/docs/common/developer_manual/architecture/desktop/run-manually/runLocal.html
+++ b/docs/common/developer_manual/architecture/desktop/run-manually/runLocal.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/run-manually/runRemote.html b/docs/common/developer_manual/architecture/desktop/run-manually/runRemote.html
index fce04c6a..2c236b21 100644
--- a/docs/common/developer_manual/architecture/desktop/run-manually/runRemote.html
+++ b/docs/common/developer_manual/architecture/desktop/run-manually/runRemote.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/run-manually/troubleshooting.html b/docs/common/developer_manual/architecture/desktop/run-manually/troubleshooting.html
index 03ae0813..5b14ba67 100644
--- a/docs/common/developer_manual/architecture/desktop/run-manually/troubleshooting.html
+++ b/docs/common/developer_manual/architecture/desktop/run-manually/troubleshooting.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/workflows.html b/docs/common/developer_manual/architecture/desktop/workflows.html
index 6c0ff72f..45091745 100644
--- a/docs/common/developer_manual/architecture/desktop/workflows.html
+++ b/docs/common/developer_manual/architecture/desktop/workflows.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/workflows/readingTheLog.html b/docs/common/developer_manual/architecture/desktop/workflows/readingTheLog.html
index 5dc3a00a..fa8b7ac4 100644
--- a/docs/common/developer_manual/architecture/desktop/workflows/readingTheLog.html
+++ b/docs/common/developer_manual/architecture/desktop/workflows/readingTheLog.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/workflows/workflowCompatibility.html b/docs/common/developer_manual/architecture/desktop/workflows/workflowCompatibility.html
index 5af59bf8..f4b90c63 100644
--- a/docs/common/developer_manual/architecture/desktop/workflows/workflowCompatibility.html
+++ b/docs/common/developer_manual/architecture/desktop/workflows/workflowCompatibility.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/architecture/desktop/workflows/workflowStructure.html b/docs/common/developer_manual/architecture/desktop/workflows/workflowStructure.html
index d5f4abad..24094554 100644
--- a/docs/common/developer_manual/architecture/desktop/workflows/workflowStructure.html
+++ b/docs/common/developer_manual/architecture/desktop/workflows/workflowStructure.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/coding_style/desktop/coding_style.html b/docs/common/developer_manual/coding_style/desktop/coding_style.html
index 9f68f0c9..35018f08 100644
--- a/docs/common/developer_manual/coding_style/desktop/coding_style.html
+++ b/docs/common/developer_manual/coding_style/desktop/coding_style.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>5. Coding Style &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>2.1. Coding Style &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,7 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="prev" title="4.2. Response to Stochastic Ground Motion" href="../../verification/desktop/EEUQ/ResponseSpectrum.html" />
+    <link rel="next" title="2.2. Software Architecture" href="../../architecture/desktop/architecture.html" />
+    <link rel="prev" title="2. How to Extend" href="../../how_to_extend.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -137,20 +138,20 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">5. Coding Style</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="#python-style">5.1. Python Style</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#c-c-style">5.2. C/C++ Style</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="#comments">5.2.1. Comments</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#naming-conventions">5.2.2. Naming Conventions</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#files">5.2.3. Files</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#variables">5.2.4. Variables</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a><ul class="current">
+<li class="toctree-l2 current"><a class="current reference internal" href="#">2.1. Coding Style</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#python-style">2.1.1. Python Style</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#c-c-style">2.1.2. C/C++ Style</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#comments">2.1.3. Comments</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#naming-conventions">2.1.4. Naming Conventions</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#files-and-interfaces">2.1.5. Files and Interfaces</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#variable">2.1.6. Variable</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="../../architecture/desktop/architecture.html">2.2. Software Architecture</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -199,7 +200,9 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-      <li><span class="section-number">5. </span>Coding Style</li>
+          <li><a href="../../how_to_extend.html"><span class="section-number">2. </span>How to Extend</a> &raquo;</li>
+        
+      <li><span class="section-number">2.1. </span>Coding Style</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -219,27 +222,41 @@
            <div itemprop="articleBody">
             
   <div class="section" id="coding-style">
-<span id="lblcodingstyle"></span><h1><span class="section-number">5. </span>Coding Style<a class="headerlink" href="#coding-style" title="Permalink to this heading">¶</a></h1>
-<p>The SimCenter frontend applications are written in <strong>C++</strong>. The applications that run in the backend are written in a mixture of languages: <strong>Python</strong>, <strong>C</strong>, and <strong>C++</strong>. The SimCenter strives to use a standard style across the applications. This section outlines that style. Consistency is the most important aspect of style. The second most important aspect is following a style that the average programmer is used to reading. Not all code will follow the guide,</p>
+<span id="lblcodingstyle"></span><h1><span class="section-number">2.1. </span>Coding Style<a class="headerlink" href="#coding-style" title="Permalink to this heading">¶</a></h1>
+<p>Not all code needs to follow the guide perfectly, but it is important to try to maintain a standard of quality.</p>
+<p>The SimCenter frontend applications are written in <strong>C++</strong>. The applications that run in the backend are written in a mixture of languages: <strong>Python</strong>, <strong>C</strong>, and <strong>C++</strong>. The SimCenter strives to use a standard style across the applications. This section outlines that style.</p>
+<div class="contents local topic" id="table-of-contents">
+<p class="topic-title">Table of Contents</p>
+<ul class="simple">
+<li><p><a class="reference internal" href="#python-style" id="id1">Python Style</a></p></li>
+<li><p><a class="reference internal" href="#c-c-style" id="id2">C/C++ Style</a></p></li>
+<li><p><a class="reference internal" href="#comments" id="id3">Comments</a></p></li>
+<li><p><a class="reference internal" href="#naming-conventions" id="id4">Naming Conventions</a></p></li>
+<li><p><a class="reference internal" href="#files-and-interfaces" id="id5">Files and Interfaces</a></p></li>
+<li><p><a class="reference internal" href="#variable" id="id6">Variable</a></p></li>
+</ul>
+</div>
+<p>Consistency is the most important aspect of style. The second most important aspect is following a style that the average programmer is used to reading.</p>
 <div class="section" id="python-style">
-<h2><span class="section-number">5.1. </span>Python Style<a class="headerlink" href="#python-style" title="Permalink to this heading">¶</a></h2>
+<span id="lbl-code-style-python"></span><h2><a class="toc-backref" href="#id1"><span class="section-number">2.1.1. </span>Python Style</a><a class="headerlink" href="#python-style" title="Permalink to this heading">¶</a></h2>
 <p>For code written in Python, SimCenter programmers follow the widely used
 <a class="reference external" href="https://www.python.org/dev/peps/pep-0008/">Guide PEP 8</a></p>
 </div>
 <div class="section" id="c-c-style">
-<h2><span class="section-number">5.2. </span>C/C++ Style<a class="headerlink" href="#c-c-style" title="Permalink to this heading">¶</a></h2>
+<span id="lbl-code-style-c"></span><h2><a class="toc-backref" href="#id2"><span class="section-number">2.1.2. </span>C/C++ Style</a><a class="headerlink" href="#c-c-style" title="Permalink to this heading">¶</a></h2>
 <p>Unlike Python, C/C++ does not have a widely accepted style guideline. Some guidelines of note include the <a class="reference external" href="https://google.github.io/styleguide/cppguide.html">Google Style</a>, the <a class="reference external" href="http://isocpp.github.io/CppCoreGuidelines/CppCoreGuidelines.html">C++ Core Guidelines</a> (edited by Stroustrup and Sutter), and an older
 C++</p>
+</div>
 <div class="section" id="comments">
-<h3><span class="section-number">5.2.1. </span>Comments<a class="headerlink" href="#comments" title="Permalink to this heading">¶</a></h3>
+<span id="lbl-code-style-comments"></span><h2><a class="toc-backref" href="#id3"><span class="section-number">2.1.3. </span>Comments</a><a class="headerlink" href="#comments" title="Permalink to this heading">¶</a></h2>
 <p>It goes without saying that you must use them. Try to use <code class="code docutils literal notranslate"><span class="pre">//</span></code> as opposed to <code class="code docutils literal notranslate"><span class="pre">/*</span> <span class="pre">*/</span></code>, making it easier to comment out a block of code when debugging.</p>
 </div>
 <div class="section" id="naming-conventions">
-<h3><span class="section-number">5.2.2. </span>Naming Conventions<a class="headerlink" href="#naming-conventions" title="Permalink to this heading">¶</a></h3>
+<span id="lbl-code-style-naming"></span><h2><a class="toc-backref" href="#id4"><span class="section-number">2.1.4. </span>Naming Conventions</a><a class="headerlink" href="#naming-conventions" title="Permalink to this heading">¶</a></h2>
 <p>All names should be meaningful and Follow a camel case approach. For classes, the names start with an uppercase letter; all class methods, functions, and variables shall begin with a lowercase letter. The exception is constant variables, which should be all uppercase, e.g. <code class="code docutils literal notranslate"><span class="pre">const</span> <span class="pre">double</span> <span class="pre">PI=3.14159265358979323;</span></code></p>
 </div>
-<div class="section" id="files">
-<h3><span class="section-number">5.2.3. </span>Files<a class="headerlink" href="#files" title="Permalink to this heading">¶</a></h3>
+<div class="section" id="files-and-interfaces">
+<span id="lbl-code-style-files"></span><h2><a class="toc-backref" href="#id5"><span class="section-number">2.1.5. </span>Files and Interfaces</a><a class="headerlink" href="#files-and-interfaces" title="Permalink to this heading">¶</a></h2>
 <ol class="arabic simple">
 <li><p>Use a <code class="docutils literal notranslate"><span class="pre">.cpp</span></code> extension for code files and a <code class="docutils literal notranslate"><span class="pre">.h</span></code> extension for interface files.</p></li>
 <li><p>All files should include at the start the <a class="reference internal" href="../../../front-matter/license.html#lbllicense"><span class="std std-ref">Copyright and License</span></a></p></li>
@@ -365,15 +382,18 @@ <h3><span class="section-number">5.2.3. </span>Files<a class="headerlink" href="
 <span class="cp">#endif </span><span class="c1">// SIMCENTER_WIDGET_H</span>
 </pre></div>
 </div>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Use 4 spaces per indentation level in both Python and C/C++ when viable.</p>
+</div>
 </div>
-<div class="section" id="variables">
-<h3><span class="section-number">5.2.4. </span>Variables<a class="headerlink" href="#variables" title="Permalink to this heading">¶</a></h3>
+<div class="section" id="variable">
+<span id="lbl-code-style-variables"></span><h2><a class="toc-backref" href="#id6"><span class="section-number">2.1.6. </span>Variable</a><a class="headerlink" href="#variable" title="Permalink to this heading">¶</a></h2>
 <ol class="arabic simple">
 <li><p>Initialize all variables</p></li>
 <li><p>When initializing float and double variables with values that could be read as integer always include a <code class="docutils literal notranslate"><span class="pre">.0</span></code>, e.g. <code class="code docutils literal notranslate"><span class="pre">double</span> <span class="pre">a</span> <span class="pre">=</span> <span class="pre">1.0;</span></code></p></li>
 </ol>
 </div>
-</div>
 </div>
 
 
diff --git a/docs/common/developer_manual/examples/desktop/eqAssessment.html b/docs/common/developer_manual/examples/desktop/eqAssessment.html
index b6624c0a..f6e14e44 100644
--- a/docs/common/developer_manual/examples/desktop/eqAssessment.html
+++ b/docs/common/developer_manual/examples/desktop/eqAssessment.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/examples/desktop/examples.html b/docs/common/developer_manual/examples/desktop/examples.html
index 6b3f79d2..e99c8bb3 100644
--- a/docs/common/developer_manual/examples/desktop/examples.html
+++ b/docs/common/developer_manual/examples/desktop/examples.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/examples/desktop/hurricaneAssessment.html b/docs/common/developer_manual/examples/desktop/hurricaneAssessment.html
index f3efef14..cc667003 100644
--- a/docs/common/developer_manual/examples/desktop/hurricaneAssessment.html
+++ b/docs/common/developer_manual/examples/desktop/hurricaneAssessment.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/examples/desktop/siteResponseAssessment/siteResponseAssessment.html b/docs/common/developer_manual/examples/desktop/siteResponseAssessment/siteResponseAssessment.html
index b016b3a1..413d1097 100644
--- a/docs/common/developer_manual/examples/desktop/siteResponseAssessment/siteResponseAssessment.html
+++ b/docs/common/developer_manual/examples/desktop/siteResponseAssessment/siteResponseAssessment.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/how_to_build/desktop/SimCenterBackend.html b/docs/common/developer_manual/how_to_build/desktop/SimCenterBackend.html
index 41f4f29b..891b1425 100644
--- a/docs/common/developer_manual/how_to_build/desktop/SimCenterBackend.html
+++ b/docs/common/developer_manual/how_to_build/desktop/SimCenterBackend.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/how_to_build/desktop/how_to_build.html b/docs/common/developer_manual/how_to_build/desktop/how_to_build.html
index 6bf1b242..29e4df8f 100644
--- a/docs/common/developer_manual/how_to_build/desktop/how_to_build.html
+++ b/docs/common/developer_manual/how_to_build/desktop/how_to_build.html
@@ -49,7 +49,7 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="2. Software Architecture" href="../../architecture/desktop/architecture.html" />
+    <link rel="next" title="2. How to Extend" href="../../how_to_extend.html" />
     <link rel="prev" title="4. Ground Motion Intensity Spatial Correlation Model Options" href="../../../technical_manual/desktop/spatial_correlation.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
@@ -152,10 +152,8 @@
 <li class="toctree-l2"><a class="reference internal" href="#modify-the-user-interface-preferences">1.4. Modify the User Interface Preferences</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/how_to_build/desktop/quoFemBackend.html b/docs/common/developer_manual/how_to_build/desktop/quoFemBackend.html
index 3d6357e9..89641e0a 100644
--- a/docs/common/developer_manual/how_to_build/desktop/quoFemBackend.html
+++ b/docs/common/developer_manual/how_to_build/desktop/quoFemBackend.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/developer_manual/how_to_extend.html b/docs/common/developer_manual/how_to_extend.html
new file mode 100644
index 00000000..ff08a3e5
--- /dev/null
+++ b/docs/common/developer_manual/how_to_extend.html
@@ -0,0 +1,355 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+  <meta charset="utf-8" />
+  
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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+  <title>2. How to Extend &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  
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+  
+  <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
+  <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
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+        <script src="../../_static/underscore.js"></script>
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+
+    
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="2.1. Coding Style" href="coding_style/desktop/coding_style.html" />
+    <link rel="prev" title="1. How to Build" href="how_to_build/desktop/how_to_build.html" />
+<script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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+<style media="screen">.vega-actions a {margin-right: 5px;}</style>
+<link href="../../_static/css/bootstrap.css" rel="stylesheet">
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+   
+  <div class="wy-grid-for-nav">
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+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search"  style="background: #F2F2F2" >
+          
+<a href="https://simcenter.designsafe-ci.org/" style="margin-bottom: 0px;">
+  <img src="../../_static/img/SimCenter-Only.png" class="logo" alt="Org-Logo" />
+</a>
+<hr style="margin: 0px;">
+
+  <a href="../../index.html">
+
+
+
+  
+  <img src="../../_static/EE-UQ-Logo.png" class="logo" alt="Logo"/>
+
+</a>
+
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+  
+  
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+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
+          
+            
+            
+              
+            
+            
+              <p class="caption" role="heading"><span class="caption-text">About</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/about/EEUQ/about.html">1. About</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../front-matter/desktop/ack.html">2. Acknowledgments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../front-matter/license.html">3. Copyright and License</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../front-matter/cite.html">4. How To Cite</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eeCapabilities.html">5. Capabilities</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eeReleaseNotes.html">6. Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eePlans.html">7. Release Plans</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../front-matter/glossary.html">8. Glossary</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../front-matter/abbreviations.html">9. Abbreviations</a></li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">User Manual</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/installation/desktop/installation.html">1. Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/usage/desktop/usage.html">2. User Interface</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/examples/desktop/examples.html">3. Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/troubleshooting/desktop/troubleshooting.html">4. Troubleshooting</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../reqments/EEUQ.html">5. Requirements</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../user_manual/bugs.html">6. Bugs &amp; Feature Requests</a></li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">Technical Manual</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/uqTechnical.html">1. Dakota Methods</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/SimCenterUQTechnical.html">2. Methods in SimCenterUQ Engine</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/damping.html">3. Damping Options</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/spatial_correlation.html">4. Ground Motion Intensity Spatial Correlation Model Options</a></li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">2. How to Extend</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html">2.1. Coding Style</a></li>
+<li class="toctree-l2"><a class="reference internal" href="architecture/desktop/architecture.html">2.2. Software Architecture</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="verification/desktop/verification.html">3. Verification</a></li>
+</ul>
+
+            
+          
+        </div>
+        
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+    </nav>
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+          <a href="../../index.html">Earthquake Engineering with Uncertainty Quantification</a>
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+<div role="navigation" aria-label="breadcrumbs navigation">
+
+  <ul class="wy-breadcrumbs">
+    
+      <li><a href="../../index.html" class="icon icon-home"></a> &raquo;</li>
+        
+      <li><span class="section-number">2. </span>How to Extend</li>
+    
+    
+      <li class="wy-breadcrumbs-aside">
+        
+          
+            <a href="../../_sources/common/developer_manual/how_to_extend.rst.txt" rel="nofollow"> View page source</a>
+          
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+      </li>
+    
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+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+            
+  <div class="section" id="how-to-extend">
+<span id="lbl-how-to-extend"></span><h1><span class="section-number">2. </span>How to Extend<a class="headerlink" href="#how-to-extend" title="Permalink to this heading">¶</a></h1>
+<p>Our software is designed to be modular and extensible. As an open-source project, we are happy to welcome contributions from the community.</p>
+<p>If you would like to contribute, checkout our GitHub repositories at <a href="#id1"><span class="problematic" id="id2">|GitHub|</span></a> and familiarize yourself with the below resources:</p>
+<div class="toctree-wrapper compound">
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="coding_style/desktop/coding_style.html">2.1. Coding Style</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#python-style">2.1.1. Python Style</a></li>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#c-c-style">2.1.2. C/C++ Style</a></li>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#comments">2.1.3. Comments</a></li>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#naming-conventions">2.1.4. Naming Conventions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#files-and-interfaces">2.1.5. Files and Interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="coding_style/desktop/coding_style.html#variable">2.1.6. Variable</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="architecture/desktop/architecture.html">2.2. Software Architecture</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="architecture/desktop/overview.html">2.2.1. Overview</a></li>
+<li class="toctree-l2"><a class="reference internal" href="architecture/desktop/file-types.html">2.2.3. File Types and Schemas</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/file-types/Inputs.html">2.2.3.1. Inputs</a></li>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/file-types/Outputs.html">2.2.3.2. Outputs</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="architecture/desktop/backendApplications.html">2.2.4. Backend Applications</a><ul>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="architecture/desktop/c4model.html">2.2.5. C4 Model of Software Architecture</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/c4model.html#level-1-context-diagram">2.2.5.1. Level 1: Context Diagram</a></li>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/c4model.html#level-2-container-diagram">2.2.5.2. Level 2: Container Diagram</a></li>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/c4model.html#level-3-component-diagram">2.2.5.3. Level 3: Component Diagram</a></li>
+<li class="toctree-l3"><a class="reference internal" href="architecture/desktop/c4model.html#level-4-code-diagram">2.2.5.4. Level 4: Code Diagram</a></li>
+</ul>
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diff --git a/docs/common/developer_manual/how_to_extend/desktop/how_to_extend.html b/docs/common/developer_manual/how_to_extend/desktop/how_to_extend.html
deleted file mode 100644
index 84a08fcd..00000000
--- a/docs/common/developer_manual/how_to_extend/desktop/how_to_extend.html
+++ /dev/null
@@ -1,319 +0,0 @@
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diff --git a/docs/common/developer_manual/verification/desktop/EEUQ/PortalFrameEarthquake.html b/docs/common/developer_manual/verification/desktop/EEUQ/PortalFrameEarthquake.html
index 47d71cb6..fa4afa2a 100644
--- a/docs/common/developer_manual/verification/desktop/EEUQ/PortalFrameEarthquake.html
+++ b/docs/common/developer_manual/verification/desktop/EEUQ/PortalFrameEarthquake.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>4.1. Earthquake Response of Portal Frame &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>3.1. Earthquake Response of Portal Frame &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -50,8 +50,8 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="4.2. Response to Stochastic Ground Motion" href="ResponseSpectrum.html" />
-    <link rel="prev" title="4. Verification" href="../verification.html" />
+    <link rel="next" title="3.2. Response to Stochastic Ground Motion" href="ResponseSpectrum.html" />
+    <link rel="prev" title="3. Verification" href="../verification.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-lite@4.13.1"></script>
 <script src="https://cdn.jsdelivr.net/npm/vega-embed@6.8.0"></script>
@@ -139,18 +139,16 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../verification.html">4. Verification</a><ul class="current">
-<li class="toctree-l2 current"><a class="current reference internal" href="#">4.1. Earthquake Response of Portal Frame</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="#verification-script">4.1.1. Verification Script</a></li>
-<li class="toctree-l3"><a class="reference internal" href="#verification-of-results">4.1.2. Verification of Results</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../verification.html">3. Verification</a><ul class="current">
+<li class="toctree-l2 current"><a class="current reference internal" href="#">3.1. Earthquake Response of Portal Frame</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#verification-script">3.1.1. Verification Script</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#verification-of-results">3.1.2. Verification of Results</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="ResponseSpectrum.html">4.2. Response to Stochastic Ground Motion</a></li>
+<li class="toctree-l2"><a class="reference internal" href="ResponseSpectrum.html">3.2. Response to Stochastic Ground Motion</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
 </ul>
 
             
@@ -199,9 +197,9 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../verification.html"><span class="section-number">4. </span>Verification</a> &raquo;</li>
+          <li><a href="../verification.html"><span class="section-number">3. </span>Verification</a> &raquo;</li>
         
-      <li><span class="section-number">4.1. </span>Earthquake Response of Portal Frame</li>
+      <li><span class="section-number">3.1. </span>Earthquake Response of Portal Frame</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -221,11 +219,11 @@
            <div itemprop="articleBody">
             
   <div class="section" id="earthquake-response-of-portal-frame">
-<span id="lblportalframeearthquake"></span><h1><span class="section-number">4.1. </span>Earthquake Response of Portal Frame<a class="headerlink" href="#earthquake-response-of-portal-frame" title="Permalink to this heading">¶</a></h1>
+<span id="lblportalframeearthquake"></span><h1><span class="section-number">3.1. </span>Earthquake Response of Portal Frame<a class="headerlink" href="#earthquake-response-of-portal-frame" title="Permalink to this heading">¶</a></h1>
 <p>In this example, a simple 2D portal frame model is used to verify the
 results of EE-UQ app. The model is a linear elastic single-bay,
 single-story model of a reinforced concrete portal frame, as shown in
-<a class="reference internal" href="#figportalverification"><span class="std std-numref">Fig. 4.1.9</span></a>. The analysis of this model considers both
+<a class="reference internal" href="#figportalverification"><span class="std std-numref">Fig. 3.1.2</span></a>. The analysis of this model considers both
 gravity loading and lateral earthquake loading due to the El Centro
 earthquake (Borrego Mountain 04/09/68 0230, El Centro ARRAY 9, 270).
 The original model and ground motion used in this example were
@@ -237,7 +235,7 @@
 <blockquote>
 <div><div class="align-center figure" id="id1">
 <span id="figportalverification"></span><img alt="../../../../../_images/portalFrame.png" src="../../../../../_images/portalFrame.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.9 </span><span class="caption-text">Two-dimensional portal frame model subjected to gravity and earthquake loading.</span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.2 </span><span class="caption-text">Two-dimensional portal frame model subjected to gravity and earthquake loading.</span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
 </div>
 </div></blockquote>
 <p>To introduce uncertainty in the model, both mass and Young’s modulus
@@ -248,7 +246,7 @@
 (<code class="docutils literal notranslate"><span class="pre">PortalFrameSampling.py</span></code>) and response statistics from both
 analyses are compared.</p>
 <table class="colwidths-given docutils align-default" id="id2">
-<caption><span class="caption-number">Table 4.1.5 </span><span class="caption-text">Uncertain parameters defined in the portal frame model</span><a class="headerlink" href="#id2" title="Permalink to this table">¶</a></caption>
+<caption><span class="caption-number">Table 3.1.1 </span><span class="caption-text">Uncertain parameters defined in the portal frame model</span><a class="headerlink" href="#id2" title="Permalink to this table">¶</a></caption>
 <colgroup>
 <col style="width: 40%" />
 <col style="width: 20%" />
@@ -280,39 +278,39 @@
 <li><p>Start EE-UQ app, click on the simulation tab (SIM) in the left bar to open a building simulation model. Click on choose button in the input script row:</p>
 <div class="align-center figure" id="id3">
 <img alt="../../../../../_images/portalFrameTcl.png" src="../../../../../_images/portalFrameTcl.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.10 </span><span class="caption-text">Choose building model</span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.3 </span><span class="caption-text">Choose building model</span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
 </div>
 </li>
 <li><p>Choose the model file <code class="docutils literal notranslate"><span class="pre">Portal2D-UQ.tcl</span></code> from the <code class="docutils literal notranslate"><span class="pre">PortalFrame2D</span></code> example folder.</p></li>
 <li><p>In the list of Clines Nodes edit box, enter <code class="docutils literal notranslate"><span class="pre">1,</span> <span class="pre">3</span></code>. This indicates to EE-UQ app that nodes 1 and 3 are the nodes used to obtain EDPs at different floor levels (i.e. base and first floor).</p>
 <div class="align-center figure" id="id4">
 <img alt="../../../../../_images/cLineNodes.png" src="../../../../../_images/cLineNodes.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.11 </span><span class="caption-text">Node selection.</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.4 </span><span class="caption-text">Node selection.</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
 </div>
 </li>
 <li><p>Click on the event tab (<strong>EVT</strong>) in the left bar to open the earthquake event specification tab, select <strong>Multiple Existing</strong> for loading Type. Click on the <strong>add</strong> button to add an earthquake event. Then click on the <strong>choose</strong> button to select the event file.</p>
 <div class="align-center figure" id="id5">
 <img alt="../../../../../_images/workEvtTab.png" src="../../../../../_images/workEvtTab.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.12 </span><span class="caption-text">Work on EVT.</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.5 </span><span class="caption-text">Work on EVT.</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
 </div>
 </li>
 <li><p>Choose the event file (<code class="docutils literal notranslate"><span class="pre">BM68elc.json</span></code>) for the El Centro earthquake provided in the portal frame 2D example folder.</p></li>
 <li><p>Now select the random variables panel (<strong>RV</strong>) from the left bar, change the random variables types to normal and set the mean and standard deviation values of the floor mass and Young’s modulus. Notice that EE-UQ app has automatically detected parameters defined in the OpenSees tcl file using the <code class="docutils literal notranslate"><span class="pre">pset</span></code> command and defined them as random variables.</p>
 <div class="align-center figure" id="id6">
 <img alt="../../../../../_images/workUqTab.png" src="../../../../../_images/workUqTab.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.13 </span><span class="caption-text">Work on <strong>UQ</strong> tab</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.6 </span><span class="caption-text">Work on <strong>UQ</strong> tab</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
 </div>
 </li>
 <li><p>Now click on <strong>run</strong>, set the analysis parameters, working directory and applications directory and click submit to run the analysis.</p></li>
 </ol>
 <p>If the run is successful the program will automatically open the
-results tab showing the summary of results (<a class="reference internal" href="#fig-figure27"><span class="std std-numref">Fig. 4.1.14</span></a>).</p>
+results tab showing the summary of results (<a class="reference internal" href="#fig-figure27"><span class="std std-numref">Fig. 3.1.7</span></a>).</p>
 <div class="align-center figure" id="id7">
 <span id="fig-figure27"></span><img alt="../../../../../_images/runAnalysis.png" src="../../../../../_images/runAnalysis.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.14 </span><span class="caption-text">Pop-up shown when clicking <strong>Run</strong>.</span><a class="headerlink" href="#id7" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.7 </span><span class="caption-text">Pop-up shown when clicking <strong>Run</strong>.</span><a class="headerlink" href="#id7" title="Permalink to this image">¶</a></p>
 </div>
 <div class="section" id="verification-script">
-<h2><span class="section-number">4.1.1. </span>Verification Script<a class="headerlink" href="#verification-script" title="Permalink to this heading">¶</a></h2>
+<h2><span class="section-number">3.1.1. </span>Verification Script<a class="headerlink" href="#verification-script" title="Permalink to this heading">¶</a></h2>
 <p>A verification script (Listing 1) for propagating the uncertainty was
 developed in Python and is included in the example folder.  The script
 creates 1000 samples for both Young’s modulus and mass values
@@ -383,7 +381,7 @@ <h2><span class="section-number">4.1.1. </span>Verification Script<a class="head
 </div>
 </div>
 <div class="section" id="verification-of-results">
-<h2><span class="section-number">4.1.2. </span>Verification of Results<a class="headerlink" href="#verification-of-results" title="Permalink to this heading">¶</a></h2>
+<h2><span class="section-number">3.1.2. </span>Verification of Results<a class="headerlink" href="#verification-of-results" title="Permalink to this heading">¶</a></h2>
 <p>This section verifies the results produced for the portal frame
 by EE-UQ app against the results of running the same
 problem using the Python script.  Running the uncertainty
@@ -393,11 +391,11 @@ <h2><span class="section-number">4.1.2. </span>Verification of Results<a class="
 agreement.</p>
 <div class="align-center figure" id="id8">
 <img alt="../../../../../_images/resultsSummaryTab.png" src="../../../../../_images/resultsSummaryTab.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.2.1 </span><span class="caption-text">Outputs from EE-UQ</span><a class="headerlink" href="#id8" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.2.1 </span><span class="caption-text">Outputs from EE-UQ</span><a class="headerlink" href="#id8" title="Permalink to this image">¶</a></p>
 </div>
 <div class="align-center figure" id="id9">
 <img alt="../../../../../_images/pyOutputs.png" src="../../../../../_images/pyOutputs.png" />
-<p class="caption"><span class="caption-number">Fig. 4.1.2.2 </span><span class="caption-text">Outputs from PortalFrameSampling.py script</span><a class="headerlink" href="#id9" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.1.2.2 </span><span class="caption-text">Outputs from PortalFrameSampling.py script</span><a class="headerlink" href="#id9" title="Permalink to this image">¶</a></p>
 </div>
 <table class="docutils align-default">
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diff --git a/docs/common/developer_manual/verification/desktop/EEUQ/ResponseSpectrum.html b/docs/common/developer_manual/verification/desktop/EEUQ/ResponseSpectrum.html
index fb0feceb..5561cbe1 100644
--- a/docs/common/developer_manual/verification/desktop/EEUQ/ResponseSpectrum.html
+++ b/docs/common/developer_manual/verification/desktop/EEUQ/ResponseSpectrum.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>4.2. Response to Stochastic Ground Motion &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>3.2. Response to Stochastic Ground Motion &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -50,8 +50,7 @@
     
     <link rel="index" title="Index" href="../../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../../search.html" />
-    <link rel="next" title="5. Coding Style" href="../../../coding_style/desktop/coding_style.html" />
-    <link rel="prev" title="4.1. Earthquake Response of Portal Frame" href="PortalFrameEarthquake.html" />
+    <link rel="prev" title="3.1. Earthquake Response of Portal Frame" href="PortalFrameEarthquake.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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@@ -139,14 +138,12 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1 current"><a class="reference internal" href="../verification.html">4. Verification</a><ul class="current">
-<li class="toctree-l2"><a class="reference internal" href="PortalFrameEarthquake.html">4.1. Earthquake Response of Portal Frame</a></li>
-<li class="toctree-l2 current"><a class="current reference internal" href="#">4.2. Response to Stochastic Ground Motion</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../verification.html">3. Verification</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="PortalFrameEarthquake.html">3.1. Earthquake Response of Portal Frame</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">3.2. Response to Stochastic Ground Motion</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
 </ul>
 
             
@@ -195,9 +192,9 @@
     
       <li><a href="../../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-          <li><a href="../verification.html"><span class="section-number">4. </span>Verification</a> &raquo;</li>
+          <li><a href="../verification.html"><span class="section-number">3. </span>Verification</a> &raquo;</li>
         
-      <li><span class="section-number">4.2. </span>Response to Stochastic Ground Motion</li>
+      <li><span class="section-number">3.2. </span>Response to Stochastic Ground Motion</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -217,7 +214,7 @@
            <div itemprop="articleBody">
             
   <div class="section" id="response-to-stochastic-ground-motion">
-<span id="lblresponsespectrum"></span><h1><span class="section-number">4.2. </span>Response to Stochastic Ground Motion<a class="headerlink" href="#response-to-stochastic-ground-motion" title="Permalink to this heading">¶</a></h1>
+<span id="lblresponsespectrum"></span><h1><span class="section-number">3.2. </span>Response to Stochastic Ground Motion<a class="headerlink" href="#response-to-stochastic-ground-motion" title="Permalink to this heading">¶</a></h1>
 <p>The purpose of this analysis is to verify that EE-UQ app is able
 to reproduce the correct pseudo-acceleration response spectrum when
 using synthetic acceleration time histories generated using the
@@ -237,7 +234,7 @@
 response spectrum. The structural response was calculated for 10
 sample synthetic acceleration time histories for each structural
 period and compared to those from <a class="reference external" href="https://github.com/NHERI-SimCenter/smelt">smelt</a> and the GMPEs, as
-shown in <a class="reference internal" href="#figstochasticvalidation"><span class="std std-numref">Fig. 4.2.1</span></a>. As can be seen in this
+shown in <a class="reference internal" href="#figstochasticvalidation"><span class="std std-numref">Fig. 3.2.1</span></a>. As can be seen in this
 figure, the spectral response calculated by EE-UQ app falls
 within the mean plus/minus one sigma bounds of the GMPEs and
 <a class="reference external" href="https://github.com/NHERI-SimCenter/smelt">smelt</a> while tending toward the mean. This produces the
@@ -248,7 +245,7 @@
 found in the <a class="reference external" href="https://github.com/NHERI-SimCenter/smelt">smelt library documentation</a>.</p>
 <div class="align-center figure" id="id1">
 <span id="figstochasticvalidation"></span><img alt="../../../../../_images/M65R20V400.png" src="../../../../../_images/M65R20V400.png" />
-<p class="caption"><span class="caption-number">Fig. 4.2.1 </span><span class="caption-text">Response spectra generated using NGA-West2 GMPEs, smelt &amp; EE-UQ for <span class="math notranslate nohighlight">\(M_W = 6.5\)</span>, closest-to-site distance <span class="math notranslate nohighlight">\(R_{rupt} = 20km\)</span>, and average shear-wave velocity <span class="math notranslate nohighlight">\(V_{s30} = 400 \frac{m}{s}\)</span>.</span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 3.2.1 </span><span class="caption-text">Response spectra generated using NGA-West2 GMPEs, smelt &amp; EE-UQ for <span class="math notranslate nohighlight">\(M_W = 6.5\)</span>, closest-to-site distance <span class="math notranslate nohighlight">\(R_{rupt} = 20km\)</span>, and average shear-wave velocity <span class="math notranslate nohighlight">\(V_{s30} = 400 \frac{m}{s}\)</span>.</span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
 </div>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
diff --git a/docs/common/developer_manual/verification/desktop/verification.html b/docs/common/developer_manual/verification/desktop/verification.html
index 370850c1..9e328e1f 100644
--- a/docs/common/developer_manual/verification/desktop/verification.html
+++ b/docs/common/developer_manual/verification/desktop/verification.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   
-  <title>4. Verification &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
+  <title>3. Verification &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
   
 
   
@@ -49,8 +49,8 @@
     
     <link rel="index" title="Index" href="../../../../genindex.html" />
     <link rel="search" title="Search" href="../../../../search.html" />
-    <link rel="next" title="4.1. Earthquake Response of Portal Frame" href="EEUQ/PortalFrameEarthquake.html" />
-    <link rel="prev" title="3. How to Extend" href="../../how_to_extend/desktop/how_to_extend.html" />
+    <link rel="next" title="3.1. Earthquake Response of Portal Frame" href="EEUQ/PortalFrameEarthquake.html" />
+    <link rel="prev" title="2.2.5. C4 Model of Software Architecture" href="../../architecture/desktop/c4model.html" />
 <script src="https://cdn.jsdelivr.net/npm/vega@5.12.1"></script>
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@@ -138,14 +138,12 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="../../how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">4. Verification</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="EEUQ/PortalFrameEarthquake.html">4.1. Earthquake Response of Portal Frame</a></li>
-<li class="toctree-l2"><a class="reference internal" href="EEUQ/ResponseSpectrum.html">4.2. Response to Stochastic Ground Motion</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">3. Verification</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="EEUQ/PortalFrameEarthquake.html">3.1. Earthquake Response of Portal Frame</a></li>
+<li class="toctree-l2"><a class="reference internal" href="EEUQ/ResponseSpectrum.html">3.2. Response to Stochastic Ground Motion</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../../coding_style/desktop/coding_style.html">5. Coding Style</a></li>
 </ul>
 
             
@@ -194,7 +192,7 @@
     
       <li><a href="../../../../index.html" class="icon icon-home"></a> &raquo;</li>
         
-      <li><span class="section-number">4. </span>Verification</li>
+      <li><span class="section-number">3. </span>Verification</li>
     
     
       <li class="wy-breadcrumbs-aside">
@@ -214,14 +212,12 @@
            <div itemprop="articleBody">
             
   <div class="section" id="verification">
-<span id="lblverification"></span><h1><span class="section-number">4. </span>Verification<a class="headerlink" href="#verification" title="Permalink to this heading">¶</a></h1>
-<blockquote>
-<div><p>This chapter collects carefully designed verification exercises that we use to test the correctness of the implementation of the EE-UQ app.</p>
-</div></blockquote>
+<span id="lblverification"></span><h1><span class="section-number">3. </span>Verification<a class="headerlink" href="#verification" title="Permalink to this heading">¶</a></h1>
+<p>This chapter collects carefully designed verification exercises that we use to test the correctness of the implementation of the EE-UQ app.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="EEUQ/PortalFrameEarthquake.html">4.1. Earthquake Response of Portal Frame</a></li>
-<li class="toctree-l1"><a class="reference internal" href="EEUQ/ResponseSpectrum.html">4.2. Response to Stochastic Ground Motion</a></li>
+<li class="toctree-l1"><a class="reference internal" href="EEUQ/PortalFrameEarthquake.html">3.1. Earthquake Response of Portal Frame</a></li>
+<li class="toctree-l1"><a class="reference internal" href="EEUQ/ResponseSpectrum.html">3.2. Response to Stochastic Ground Motion</a></li>
 </ul>
 </div>
 </div>
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index 0318b796..fc53970f 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.31/index.html
+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.31/index.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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index 43026f34..c11f2b6b 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.33/index.html
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@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.35/index.html b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.35/index.html
index efadaab3..76bd6347 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.35/index.html
+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.35/index.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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index 112342b9..c066ce85 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.41/index.html
+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.41/index.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.42/index.html b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.42/index.html
index 509d7641..0f35a4d3 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.42/index.html
+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.42/index.html
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-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.44/index.html b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.44/index.html
index 04d7787e..09d99cef 100644
--- a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.44/index.html
+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.44/index.html
@@ -136,10 +136,8 @@
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 <li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.49/index.html b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.49/index.html
index b3786eba..34510eef 100644
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+++ b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.49/index.html
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-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.51/index.html b/docs/common/dldb/damage/FEMA_P58_2nd/B/B.10/B.10.51/index.html
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@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/dldb/repair/Hazus_EQ_trnsp/HWB/index.html b/docs/common/dldb/repair/Hazus_EQ_trnsp/HWB/index.html
index 44212c99..9ffb9efc 100644
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@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/front-matter/cite.html b/docs/common/front-matter/cite.html
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-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
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index 201b68bb..175f87a9 100644
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-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/front-matter/glossary.html b/docs/common/front-matter/glossary.html
index e78f5bfb..7668c8e8 100644
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-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
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@@ -211,7 +209,7 @@
             
   <div class="section" id="copyright-and-license">
 <span id="lbllicense"></span><h1><span class="section-number">3. </span>Copyright and License<a class="headerlink" href="#copyright-and-license" title="Permalink to this heading">¶</a></h1>
-<p>The EE-UQ app is copyright “The Regents of the University of California” and is licensed under the following BSD license:</p>
+<p>The EE-UQ app is copyrighted by “The Regents of the University of California” and is licensed under the following BSD license:</p>
 <div class="highlight-none notranslate"><div class="highlight"><pre><span></span>The source code is licensed under a BSD 2-Clause License.
 
 Copyright (c) 2017-2025, The Regents of the University of California
diff --git a/docs/common/reqments/All-Requirements_allCols.html b/docs/common/reqments/All-Requirements_allCols.html
index 8603ba15..37445b61 100644
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-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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-  
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-  
-  <title>Requirements &mdash; Earthquake Engineering with Uncertainty Quantification  documentation</title>
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-  <div class="wy-grid-for-nav">
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-    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
-      <div class="wy-side-scroll">
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-          
-<a href="https://simcenter.designsafe-ci.org/" style="margin-bottom: 0px;">
-  <img src="../../_static/img/SimCenter-Only.png" class="logo" alt="Org-Logo" />
-</a>
-<hr style="margin: 0px;">
-
-  <a href="../../index.html">
-
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-  <img src="../../_static/EE-UQ-Logo.png" class="logo" alt="Logo"/>
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-</a>
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-  
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-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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-            
-            
-              
-            
-            
-              <p class="caption" role="heading"><span class="caption-text">About</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/about/EEUQ/about.html">1. About</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../front-matter/desktop/ack.html">2. Acknowledgments</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../front-matter/license.html">3. Copyright and License</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../front-matter/cite.html">4. How To Cite</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eeCapabilities.html">5. Capabilities</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eeReleaseNotes.html">6. Release Notes</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/releases/eePlans.html">7. Release Plans</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../front-matter/glossary.html">8. Glossary</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../front-matter/abbreviations.html">9. Abbreviations</a></li>
-</ul>
-<p class="caption" role="heading"><span class="caption-text">User Manual</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/installation/desktop/installation.html">1. Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/usage/desktop/usage.html">2. User Interface</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/examples/desktop/examples.html">3. Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/troubleshooting/desktop/troubleshooting.html">4. Troubleshooting</a></li>
-<li class="toctree-l1"><a class="reference internal" href="EEUQ.html">5. Requirements</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../user_manual/bugs.html">6. Bugs &amp; Feature Requests</a></li>
-</ul>
-<p class="caption" role="heading"><span class="caption-text">Technical Manual</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/uqTechnical.html">1. Dakota Methods</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/SimCenterUQTechnical.html">2. Methods in SimCenterUQ Engine</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/damping.html">3. Damping Options</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../technical_manual/desktop/spatial_correlation.html">4. Ground Motion Intensity Spatial Correlation Model Options</a></li>
-</ul>
-<p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
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-  <div class="section" id="requirements">
-<span id="lblrequirements"></span><h1>Requirements<a class="headerlink" href="#requirements" title="Permalink to this heading">¶</a></h1>
-<p>The purpose of presenting these requirements is to inform the community on the present capabilities of the EE-UQ app and features that could be added. The original set of requirements have come from a set of grand challenge reports, <strong>GC</strong>. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, <strong>SP</strong>. Additional requirements have come from users, <strong>U</strong> See section <a class="reference internal" href="../user_manual/bugs.html#features"><span class="std std-ref">Feature Requests</span></a> if you have additional features you would like to see.</p>
-<div class="section" id="quofem-requirements">
-<h2>quoFEM Requirements<a class="headerlink" href="#quofem-requirements" title="Permalink to this heading">¶</a></h2>
-<table class="colwidths-given docutils align-default" id="id39">
-<caption><span class="caption-text">Requirements - QF</span><a class="headerlink" href="#id39" title="Permalink to this table">¶</a></caption>
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 50%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-</colgroup>
-<tbody>
-<tr class="row-odd"><td><p>QF.1.1</p></td>
-<td><p>Ability to use Forward Propagtion methods listed in UQ under UF</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>QF.1.2</p></td>
-<td><p>Ability to use Random Variable Distributions defeined in RV</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.1.3</p></td>
-<td><p>Ability to use Reliability Methods listed in UQ under UR</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>QF.1.4</p></td>
-<td><p>Ability to use Global Sensitivity Methods listed in UQ under UG</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.1.5</p></td>
-<td><p>Ability to both use and create surrogates listed in UQ under US</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>InProgress</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>QF.1.6</p></td>
-<td><p>Ability to use High Dimensional UQ listed in UQ under UH</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>InProgress</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.1.7</p></td>
-<td><p>Ability to use Bayesian Calibration methods listed in UQ under UB</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>QF.1.8</p></td>
-<td><p>Ability to use Nonlinear Least Squares  methods listed in UQ under UN</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.2.1</p></td>
-<td><p>Ability to use OpenSees</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM/tree/master/Examples//qfem-0011//">qfem-0011/</a></p></td>
-</tr>
-<tr class="row-even"><td><p>QF.2.2</p></td>
-<td><p>Ability to use OpenSeesPy</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.2.3</p></td>
-<td><p>Ability to Incorporate User Own Applications</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM/tree/master/Examples//qfem-0005//">qfem-0005/</a></p></td>
-</tr>
-<tr class="row-even"><td><p>QF.3.1</p></td>
-<td><p>Ability to view individual sample results</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><strong>core</strong></p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.3.2</p></td>
-<td><p>Ability to graphically view the results to show distribution in response</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><strong>core</strong></p></td>
-</tr>
-<tr class="row-even"><td><p>QF.3.3</p></td>
-<td><p>Ability to view statistical measures of response</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><strong>core</strong></p></td>
-</tr>
-<tr class="row-odd"><td><p>QF.4.1</p></td>
-<td><p>Run application from command line, include option to run remotely</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>QF.7.1</p></td>
-<td><p>Application to Provide Common SimCenter Research Application Requirements listed in CR</p></td>
-<td><p>GC</p></td>
-<td><p>M</p></td>
-<td><p>InProgresss</p></td>
-<td><p>_</p></td>
-</tr>
-</tbody>
-</table>
-<div class="line-block">
-<div class="line"><strong>Key:</strong></div>
-<div class="line-block">
-<div class="line"><strong>Source</strong>: GC=Needed for Grand Challenges, SP=Senior Personnel, UF=User Feedback</div>
-<div class="line"><strong>Priority</strong>: M=Mandatory, D=Desirable, P=Possible Future</div>
-<div class="line"><strong>Status</strong>: Implemented, InProgress, and Blank (i.e. not started)</div>
-<div class="line"><strong>Implementation</strong>: UM=User Manual, DM=Developer Manual, SC=Source Code</div>
-</div>
-</div>
-</div>
-<div class="section" id="uq-requirements">
-<h2>UQ Requirements<a class="headerlink" href="#uq-requirements" title="Permalink to this heading">¶</a></h2>
-<table class="colwidths-given docutils align-default" id="id40">
-<caption><span class="caption-text">Requirements - Uncertainty Quantification Methods and Variables</span><a class="headerlink" href="#id40" title="Permalink to this table">¶</a></caption>
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 50%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-</colgroup>
-<thead>
-<tr class="row-odd"><th class="head"><p>#</p></th>
-<th class="head"><p>Description</p></th>
-<th class="head"><p>Source</p></th>
-<th class="head"><p>Priority</p></th>
-<th class="head"><p>Status</p></th>
-<th class="head"><p>Implementation</p></th>
-</tr>
-</thead>
-<tbody>
-<tr class="row-even"><td><p>UF.1</p></td>
-<td><p>Ability to use basic Monte Carlo and LHS methods</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0001/README.html">qfem-0001</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UF.2</p></td>
-<td><p>Ability to use Gaussian Process Regression</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/SimCenterUQMF.html#lblsimforwardmf">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UF.3</p></td>
-<td><p>Ability to use Multi-Scale Monte Carlo</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>UF.4</p></td>
-<td><p>Ability to use Multi-Fidelity Models</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/SimCenterUQMF.html#lblsimforwardmf">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UF.5</p></td>
-<td><p>Ability to use Multi-model Forward Propagation</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0027/README.html">qfem-0027</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UR.1</p></td>
-<td><p>Ability to use First Order Reliability method</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0001/README.html#reliability-analysis">qfem-0001</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UR.2</p></td>
-<td><p>Ability to use Second Order Reliability method</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/DakotaReliability.html#lbldakotareliability">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UR.3</p></td>
-<td><p>Ability to use Surrogate Based Reliability</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/DakotaReliability.html#lbldakotareliability">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UR.4</p></td>
-<td><p>Ability to use Importance Sampling</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/DakotaReliability.html#lbldakotareliability">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UG.1</p></td>
-<td><p>Ability to obtain Global Sensitivity Sobol indices</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0001/README.html#reliability-analysis">qfem-0001</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UG.2</p></td>
-<td><p>Ability to use probability model-based global sensitivity analysis (PM-GSA)</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0009/README.html">qfem-0009</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UG.3</p></td>
-<td><p>Ability to use probability model-based global sensitivity analysis (PM-GSA) for high-dimensional outputs</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0023/README.html">qfem-0023</a></p></td>
-</tr>
-<tr class="row-even"><td><p>US.1</p></td>
-<td><p>Ability to Construct Gaussian Process (GP) Regression Model from a Simulation Model</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0016/README.html">qfem-0016</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>US.2</p></td>
-<td><p>Ability to Construct GP Regression Model from Input-output Dataset</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/SimCenterUQSurrogate.html#lblsimsurrogate">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>US.3</p></td>
-<td><p>Ability to use Surrogate Model for UQ Analysis</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0016/README.html">qfem-0016</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>US.4</p></td>
-<td><p>Ability to Save the Surrogate Model</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0016/README.html">qfem-0016</a></p></td>
-</tr>
-<tr class="row-even"><td><p>US.5</p></td>
-<td><p>Ability to Use Adaptive Design of Experiments</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/SimCenterUQSurrogate.html#lblsimsurrogate">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>US.6</p></td>
-<td><p>Ability to Assess Reliability of Surrogate Model</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0016/README.html">qfem-0016</a></p></td>
-</tr>
-<tr class="row-even"><td><p>US.7</p></td>
-<td><p>Ability to Build Surrogate Under Stochastic Excitation</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0025/README.html">qfem-0025</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>US.8</p></td>
-<td><p>Ability to Use Physics-Informed Machine Learning</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>UN.1</p></td>
-<td><p>Ability to use Gauss-Newton solvers for parameter estimation</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0007/README.html">qfem-0007</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UN.2</p></td>
-<td><p>Ability to read calibration data from a file</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0007/README.html">qfem-0007</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UN.3</p></td>
-<td><p>Ability to handle non-scalar response quantities</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0007/README.html">qfem-0007</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UN.4</p></td>
-<td><p>Ability to run gradient-free parameter estimation</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/DakotaGradientFreeOptimization.html#lbldakotagradientfreeestimation">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UB.1</p></td>
-<td><p>Ability to use DREAM algorithm for Bayesian inference</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/DakotaBayesianCalibration.html#lbldakotabayesiancalibration">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UB.2</p></td>
-<td><p>Ability to use TMCMC algorithm for Bayesian inference</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UB.3</p></td>
-<td><p>Ability to read calibration data from a file</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UB.4</p></td>
-<td><p>Ability to handle non-scalar response quantities</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UB.5</p></td>
-<td><p>Ability to calibrate multipliers on error covariance</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UB.6</p></td>
-<td><p>Ability to use a default log-likelihood function</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UB.7</p></td>
-<td><p>Ability to use Kalman Filtering</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>UB.8</p></td>
-<td><p>Ability to use Particle Filtering</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>UB.9</p></td>
-<td><p>Ability to perform model-class selection/averaging</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0029/README.html">qfem-0029</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UB.10</p></td>
-<td><p>Ability to perform hierarchical Bayesian calibration</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.ia/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0028/README.html">qfem-0028</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UB.11</p></td>
-<td><p>Ability to perform surrogate-aided Bayesian calibration</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>In Progress</p></td>
-<td><p>1.1.2.3.4</p></td>
-</tr>
-<tr class="row-odd"><td><p>UH.1</p></td>
-<td><p>Ability to sample from manifold</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0022/README.html">qfem-0022</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UH.2</p></td>
-<td><p>Ability to build Reduced Order Model</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>In Progress</p></td>
-<td><p>1.2.4.4</p></td>
-</tr>
-<tr class="row-odd"><td><p>UO.1</p></td>
-<td><p>Ability to use User-Specified External UQ Engine</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0017/README.html">qfem-0017</a></p></td>
-</tr>
-<tr class="row-even"><td><p>UO.2</p></td>
-<td><p>Ability to use Own External FEM Application</p></td>
-<td><p>UF</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/quoFEM/FEM.html#custom">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>UO.3</p></td>
-<td><p>Ability to use UQ Engines other than SimCenterUQ, Dakota, or UCSD-UQ</p></td>
-<td><p>UF</p></td>
-<td><p>P</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-</tbody>
-</table>
-<div class="line-block">
-<div class="line"><strong>Key:</strong></div>
-<div class="line-block">
-<div class="line"><strong>Source</strong>: GC=Needed for Grand Challenges, SP=Senior Personnel, UF=User Feedback</div>
-<div class="line"><strong>Priority</strong>: M=Mandatory, D=Desirable, P=Possible Future</div>
-<div class="line"><strong>Status</strong>: Implemented, InProgress, and Blank (i.e. not started)</div>
-<div class="line"><strong>Implementation</strong>: UM=User Manual, DM=Developer Manual, SC=Source Code</div>
-</div>
-</div>
-</div>
-<div class="section" id="rv-requirements">
-<h2>RV Requirements<a class="headerlink" href="#rv-requirements" title="Permalink to this heading">¶</a></h2>
-<table class="colwidths-given docutils align-default" id="id41">
-<caption><span class="caption-text">Requirements - CR</span><a class="headerlink" href="#id41" title="Permalink to this table">¶</a></caption>
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 50%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-</colgroup>
-<thead>
-<tr class="row-odd"><th class="head"><p>#</p></th>
-<th class="head"><p>Description</p></th>
-<th class="head"><p>Source</p></th>
-<th class="head"><p>Priority</p></th>
-<th class="head"><p>Status</p></th>
-<th class="head"><p>Implementation</p></th>
-</tr>
-</thead>
-<tbody>
-<tr class="row-even"><td><p><strong>RV.1</strong></p></td>
-<td><p><strong>Various Random Variable Probability Distributions</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.1</p></td>
-<td><p>Normal</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0001/README.html">qfem-0001</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.1.2</p></td>
-<td><p>Lognormal</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0001/README.html">qfem-0001</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.3</p></td>
-<td><p>Uniform</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0014/README.html">qfem-0014</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.1.4</p></td>
-<td><p>Beta</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0002/README.html">qfem-0002</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.5</p></td>
-<td><p>Weibull</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0002/README.html">qfem-0002</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.1.6</p></td>
-<td><p>Gumbel</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.7</p></td>
-<td><p>Exponential</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.1.8</p></td>
-<td><p>Discrete</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.9</p></td>
-<td><p>Gamma</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.1.10</p></td>
-<td><p>Chi-squared</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.1.11</p></td>
-<td><p>Truncated Exponential</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/usage/desktop/RV.html">UM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.2</p></td>
-<td><p>User-defined Distribution</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.3</p></td>
-<td><p>Define Correlation Matrix</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0009/README.html">qfem-0009</a></p></td>
-</tr>
-<tr class="row-even"><td><p>RV.4</p></td>
-<td><p>Random Fields</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>RV.5</p></td>
-<td><p>Ability to View Graphically the density function when defining the RV</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://nheri-simcenter.github.io/quoFEM-Documentation/common/user_manual/examples/desktop/qfem-0009/README.html">qfem-0009</a></p></td>
-</tr>
-</tbody>
-</table>
-<div class="line-block">
-<div class="line"><strong>Key:</strong></div>
-<div class="line-block">
-<div class="line"><strong>Source</strong>: GC=Needed for Grand Challenges, SP=Senior Personnel, UF=User Feedback</div>
-<div class="line"><strong>Priority</strong>: M=Mandatory, D=Desirable, P=Possible Future</div>
-<div class="line"><strong>Status</strong>: Implemented, InProgress, and Blank (i.e. not started)</div>
-<div class="line"><strong>Implementation</strong>: UM=User Manual, DM=Developer Manual, SC=Source Code</div>
-</div>
-</div>
-</div>
-<div class="section" id="common-research-application-requirements">
-<h2>Common Research Application Requirements<a class="headerlink" href="#common-research-application-requirements" title="Permalink to this heading">¶</a></h2>
-<table class="colwidths-given docutils align-default" id="id42">
-<caption><span class="caption-text">Requirements - CR</span><a class="headerlink" href="#id42" title="Permalink to this table">¶</a></caption>
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 50%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-<col style="width: 10%" />
-</colgroup>
-<thead>
-<tr class="row-odd"><th class="head"><p>#</p></th>
-<th class="head"><p>Description</p></th>
-<th class="head"><p>Source</p></th>
-<th class="head"><p>Priority</p></th>
-<th class="head"><p>Status</p></th>
-<th class="head"><p>Implementation</p></th>
-</tr>
-</thead>
-<tbody>
-<tr class="row-even"><td><p><strong>CR.1</strong></p></td>
-<td><p><strong>Open-source software where developers can test new data and develop algorithms</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-odd"><td><p>CR.1.1</p></td>
-<td><p>Provide open-source applications utilizing code hosting platforms, e.g. GitHub</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM">quoFEM</a></p></td>
-</tr>
-<tr class="row-even"><td><p>CR.1.2</p></td>
-<td><p>Assign an open-source license that allows free use</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM/blob/master/LICENSE">quoFEM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p><strong>CR.2</strong></p></td>
-<td><p><strong>Ability to use multiple coupled resources (applications, databases, viz tools) by Practicing Engineers</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-even"><td><p>CR.2.1</p></td>
-<td><p>Allow users to launch scientific workflows</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM">quoFEM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p><strong>CR.3</strong></p></td>
-<td><p><strong>Ability to utilize resources beyond the desktop including HPC</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-even"><td><p>CR.3.1</p></td>
-<td><p>Allow users to utilize HPC resources at TACC through DesignSafe</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://github.com/NHERI-SimCenter/quoFEM">quoFEM</a></p></td>
-</tr>
-<tr class="row-odd"><td><p><strong>CR.4</strong></p></td>
-<td><p><strong>Efficient use of multiple coupled and linked models requiring sharing and inter-operability of databases, computing environments, networks, visualization tools, and analysis systems</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-even"><td><p>CR.4.1</p></td>
-<td><p>Identify and include external analysis systems</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>InProgress</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>CR.4.2</p></td>
-<td><p>Identify and include external databases</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>InProgress</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>CR.4.3</p></td>
-<td><p>Identify and include external viz tools</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>InProgress</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>CR.4.4</p></td>
-<td><p>Identify and include external computing env</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Inprogress</p></td>
-<td><p>1.1.2.5.5</p></td>
-</tr>
-<tr class="row-even"><td><p><strong>CR.5</strong></p></td>
-<td><p><strong>Tool available for download from web</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-odd"><td><p>CR.5.1</p></td>
-<td><p>Tool downloadable from DesignSafe website</p></td>
-<td><p>GC</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://www.designsafe-ci.org/data/browser/public/designsafe.storage.community//SimCenter/Software/quoFEM">quoFEM</a></p></td>
-</tr>
-<tr class="row-even"><td><p><strong>CR.6</strong></p></td>
-<td><p><strong>Ability to benefit from programs that move research results into practice and obtain training</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-odd"><td><p>CR.6.1</p></td>
-<td><p>Ability to use educational provisions to gain interdisciplinary education for expertise in earth sciences and physics, engineering mechanics, geotechnical engineering, and structural engineering to be qualified to perform these simulations</p></td>
-<td><p>GC</p></td>
-<td><p>D</p></td>
-<td><p>_</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>CR.6.2</p></td>
-<td><p>Documentation exists demonstrating application usage</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>CR.6.3</p></td>
-<td><p>Video exists demonstrating application usage</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-even"><td><p>CR.6.4</p></td>
-<td><p>Tool training through online and in-person training events</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p>_</p></td>
-</tr>
-<tr class="row-odd"><td><p>CR.7</p></td>
-<td><p>Verification examples exist</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/developer_manual/verification/desktop/verification.html">quoFEM</a></p></td>
-</tr>
-<tr class="row-even"><td><p><strong>CR.8</strong></p></td>
-<td><p><strong>Validation of proposed analytical models against existing empirical datasets</strong></p></td>
-<td></td>
-<td></td>
-<td></td>
-<td></td>
-</tr>
-<tr class="row-odd"><td><p>CR.8.1</p></td>
-<td><p>Validation examples exist, validated against tests or other software</p></td>
-<td><p>GC</p></td>
-<td><p>M</p></td>
-<td><p>_</p></td>
-<td></td>
-</tr>
-<tr class="row-even"><td><p>CR.9</p></td>
-<td><p>Tool to allow users to load and save user inputs</p></td>
-<td><p>SP</p></td>
-<td><p>M</p></td>
-<td><p>Implemented</p></td>
-<td><p><strong>core</strong></p></td>
-</tr>
-<tr class="row-odd"><td><p>CR.10</p></td>
-<td><p>Installer which installs the application and all needed software</p></td>
-<td><p>UF</p></td>
-<td><p>D</p></td>
-<td><p>Implemented</p></td>
-<td><p><a class="reference external" href="https://NHERI-SimCenter.github.io/quoFEM-Documentation/common/user_manual/installation/desktop/installation.html">quoFEM</a></p></td>
-</tr>
-</tbody>
-</table>
-<div class="line-block">
-<div class="line"><strong>Key:</strong></div>
-<div class="line-block">
-<div class="line"><strong>Source</strong>: GC=Needed for Grand Challenges, SP=Senior Personnel, UF=User Feedback</div>
-<div class="line"><strong>Priority</strong>: M=Mandatory, D=Desirable, P=Possible Future</div>
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diff --git a/docs/common/reqments/EE-UQ-Requirements.html b/docs/common/reqments/EE-UQ-Requirements.html
index 9675b864..029dbbac 100644
--- a/docs/common/reqments/EE-UQ-Requirements.html
+++ b/docs/common/reqments/EE-UQ-Requirements.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/reqments/EEUQ.html b/docs/common/reqments/EEUQ.html
index 489ef06d..0a6cf71b 100644
--- a/docs/common/reqments/EEUQ.html
+++ b/docs/common/reqments/EEUQ.html
@@ -147,10 +147,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/reqments/key.html b/docs/common/reqments/key.html
index cb66a9ab..c22752f5 100644
--- a/docs/common/reqments/key.html
+++ b/docs/common/reqments/key.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/reqments/reqPelicun.html b/docs/common/reqments/reqPelicun.html
index 398a7a23..09e040b8 100644
--- a/docs/common/reqments/reqPelicun.html
+++ b/docs/common/reqments/reqPelicun.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/reqments/reqQUOFE.html b/docs/common/reqments/reqQUOFE.html
index cbbaa7ed..4de9319e 100644
--- a/docs/common/reqments/reqQUOFE.html
+++ b/docs/common/reqments/reqQUOFE.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -209,7 +207,7 @@
             
   <div class="section" id="requirements">
 <span id="lblrequirements"></span><h1>Requirements<a class="headerlink" href="#requirements" title="Permalink to this heading">¶</a></h1>
-<p>The purpose of presenting these requirements is to inform the community on the present capabilities of the EE-UQ app and features that could be added. The original set of requirements have come from a set of grand challenge reports, <strong>GC</strong>. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, <strong>SP</strong>. Additional requirements have come from users, <strong>U</strong>. See section <a class="reference internal" href="../user_manual/bugs.html#features"><span class="std std-ref">Feature Requests</span></a> if you have additional features you would like to see.</p>
+<p>The purpose of presenting these requirements is to inform the community about the present capabilities of the EE-UQ app and features that could be added. The original set of requirements has come from a set of grand challenge reports, <strong>GC</strong>. These original requirements have been broken into a smaller set of deliverable features by the senior faculty associated with the project, <strong>SP</strong>. Additional requirements have come from users, <strong>U</strong>. See section <a class="reference internal" href="../user_manual/bugs.html#features"><span class="std std-ref">Feature Requests</span></a> if you have additional features you would like to see.</p>
 <div class="section" id="quofem-requirements">
 <h2>quoFEM Requirements<a class="headerlink" href="#quofem-requirements" title="Permalink to this heading">¶</a></h2>
 <table class="colwidths-given docutils align-default" id="id52">
diff --git a/docs/common/technical_manual/desktop/HazardSimulationTool_useCase.html b/docs/common/technical_manual/desktop/HazardSimulationTool_useCase.html
index 30baa56e..ace7ef94 100644
--- a/docs/common/technical_manual/desktop/HazardSimulationTool_useCase.html
+++ b/docs/common/technical_manual/desktop/HazardSimulationTool_useCase.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/SimCenterUQTechnical.html b/docs/common/technical_manual/desktop/SimCenterUQTechnical.html
index 3c9bc596..86fa5927 100644
--- a/docs/common/technical_manual/desktop/SimCenterUQTechnical.html
+++ b/docs/common/technical_manual/desktop/SimCenterUQTechnical.html
@@ -169,10 +169,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/UCSDUQTechnical.html b/docs/common/technical_manual/desktop/UCSDUQTechnical.html
index 6816f5bd..81a570d9 100644
--- a/docs/common/technical_manual/desktop/UCSDUQTechnical.html
+++ b/docs/common/technical_manual/desktop/UCSDUQTechnical.html
@@ -137,10 +137,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/damping.html b/docs/common/technical_manual/desktop/damping.html
index 5eb10523..814840b4 100644
--- a/docs/common/technical_manual/desktop/damping.html
+++ b/docs/common/technical_manual/desktop/damping.html
@@ -143,10 +143,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/hazard_occurrence.html b/docs/common/technical_manual/desktop/hazard_occurrence.html
index 765cd4c7..d098a8e2 100644
--- a/docs/common/technical_manual/desktop/hazard_occurrence.html
+++ b/docs/common/technical_manual/desktop/hazard_occurrence.html
@@ -137,10 +137,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/spatial_correlation.html b/docs/common/technical_manual/desktop/spatial_correlation.html
index 7c336c35..c6f57e05 100644
--- a/docs/common/technical_manual/desktop/spatial_correlation.html
+++ b/docs/common/technical_manual/desktop/spatial_correlation.html
@@ -148,10 +148,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/technical_manual.html b/docs/common/technical_manual/desktop/technical_manual.html
index eef8c916..7f22da75 100644
--- a/docs/common/technical_manual/desktop/technical_manual.html
+++ b/docs/common/technical_manual/desktop/technical_manual.html
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/technical_manual/desktop/uqTechnical.html b/docs/common/technical_manual/desktop/uqTechnical.html
index 9c0e12f2..18d8eb71 100644
--- a/docs/common/technical_manual/desktop/uqTechnical.html
+++ b/docs/common/technical_manual/desktop/uqTechnical.html
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -213,7 +211,7 @@
             
   <div class="section" id="dakota-methods">
 <span id="lbluqtechnical"></span><h1><span class="section-number">1. </span>Dakota Methods<a class="headerlink" href="#dakota-methods" title="Permalink to this heading">¶</a></h1>
-<p>The methods and theory implemented by the Dakota application are best described by Dakota’s developers. A comprehensive <a class="reference external" href="https://dakota.sandia.gov/sites/default/files/docs/6.11/Theory-6.11.0.pdf">Dakota Theory Manual</a> is available.</p>
+<p>The methods and theory implemented by the Dakota application are best described by Dakota’s developers. A comprehensive <a class="reference external" href="https://www.sandia.gov/app/uploads/sites/241/2023/03/Theory-6.13.0.pdf">Dakota Theory Manual</a> is available.</p>
 </div>
 
 
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-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -224,7 +222,7 @@
             
   <div class="section" id="examples">
 <span id="lbl-examples"></span><h1><span class="section-number">3. </span>Examples<a class="headerlink" href="#examples" title="Permalink to this heading">¶</a></h1>
-<p>The following are a few examples showing the usage of EE-UQ. Video companions showing these examples are also provided. The files for the examples are available in Github.</p>
+<p>The following are a few examples showing the usage of EE-UQ. Video companions showing these examples are also provided. The files for the examples are available in GitHub.</p>
 <div class="toctree-wrapper compound">
 </div>
 
diff --git a/docs/common/user_manual/installation/desktop/downloadOther.html b/docs/common/user_manual/installation/desktop/downloadOther.html
index f1766418..f920807f 100644
--- a/docs/common/user_manual/installation/desktop/downloadOther.html
+++ b/docs/common/user_manual/installation/desktop/downloadOther.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/installation/desktop/downloadOtherMAC.html b/docs/common/user_manual/installation/desktop/downloadOtherMAC.html
index 564bc354..288235ef 100644
--- a/docs/common/user_manual/installation/desktop/downloadOtherMAC.html
+++ b/docs/common/user_manual/installation/desktop/downloadOtherMAC.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/installation/desktop/downloadOtherWindows.html b/docs/common/user_manual/installation/desktop/downloadOtherWindows.html
index f76b6325..b36cc352 100644
--- a/docs/common/user_manual/installation/desktop/downloadOtherWindows.html
+++ b/docs/common/user_manual/installation/desktop/downloadOtherWindows.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/installation/desktop/install_Windows.html b/docs/common/user_manual/installation/desktop/install_Windows.html
index 1c0d5f98..075e568f 100644
--- a/docs/common/user_manual/installation/desktop/install_Windows.html
+++ b/docs/common/user_manual/installation/desktop/install_Windows.html
@@ -147,10 +147,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/installation/desktop/install_macOS.html b/docs/common/user_manual/installation/desktop/install_macOS.html
index 3670a361..d4ef60e0 100644
--- a/docs/common/user_manual/installation/desktop/install_macOS.html
+++ b/docs/common/user_manual/installation/desktop/install_macOS.html
@@ -147,10 +147,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -303,10 +301,12 @@ <h2><span class="section-number">1.2.5. </span>Test the Installation<a class="he
 <div class="admonition note">
 <p class="admonition-title">Note</p>
 <p>When the EE-UQ app is running, open the app/preferences or File/Preferences and make sure that python3 appears under <strong>External Applications:Python</strong>, as shown in the figure below. If you used older versions of SimCenter tools this was not the default. The exact location of Python3 that you installed can be found by opening the terminal application and executing the <strong>which python3</strong> command. Enter the path shown as a response in the Preferences panel under Python and then press the <strong>Save</strong> button.</p>
-<div class="align-center figure" id="id24">
+<blockquote>
+<div><div class="align-center figure" id="figui-preferences">
 <a class="reference internal image-reference" href="../../../../_images/pythonPreferences.png"><img alt="../../../../_images/pythonPreferences.png" src="../../../../_images/pythonPreferences.png" style="width: 75%;" /></a>
-<p class="caption"><span class="caption-number">Fig. 1.2.5.7 </span><span class="caption-text">Set Python Preferences.</span><a class="headerlink" href="#id24" title="Permalink to this image">¶</a></p>
 </div>
+<p>Set Python Preferences.</p>
+</div></blockquote>
 </div>
 </div>
 </div>
diff --git a/docs/common/user_manual/installation/desktop/installation.html b/docs/common/user_manual/installation/desktop/installation.html
index e1d7629e..bb357c4d 100644
--- a/docs/common/user_manual/installation/desktop/installation.html
+++ b/docs/common/user_manual/installation/desktop/installation.html
@@ -142,10 +142,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/eeCapabilities.html b/docs/common/user_manual/releases/eeCapabilities.html
index 8a5276a8..d2ee8d80 100644
--- a/docs/common/user_manual/releases/eeCapabilities.html
+++ b/docs/common/user_manual/releases/eeCapabilities.html
@@ -145,10 +145,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/eePlans.html b/docs/common/user_manual/releases/eePlans.html
index 48e11354..a4e03da7 100644
--- a/docs/common/user_manual/releases/eePlans.html
+++ b/docs/common/user_manual/releases/eePlans.html
@@ -142,10 +142,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/eeReleaseNotes.html b/docs/common/user_manual/releases/eeReleaseNotes.html
index b2bc157b..1b70d726 100644
--- a/docs/common/user_manual/releases/eeReleaseNotes.html
+++ b/docs/common/user_manual/releases/eeReleaseNotes.html
@@ -152,10 +152,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/pbeCapabilities.html b/docs/common/user_manual/releases/pbeCapabilities.html
index 35a57a52..d4b7f07d 100644
--- a/docs/common/user_manual/releases/pbeCapabilities.html
+++ b/docs/common/user_manual/releases/pbeCapabilities.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/pbePlans.html b/docs/common/user_manual/releases/pbePlans.html
index 89dbfa1f..85b1b048 100644
--- a/docs/common/user_manual/releases/pbePlans.html
+++ b/docs/common/user_manual/releases/pbePlans.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/pbeReleaseNotes.html b/docs/common/user_manual/releases/pbeReleaseNotes.html
index 4b181bdc..2a63b45e 100644
--- a/docs/common/user_manual/releases/pbeReleaseNotes.html
+++ b/docs/common/user_manual/releases/pbeReleaseNotes.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/quoCapabilities.html b/docs/common/user_manual/releases/quoCapabilities.html
index c1cbc44f..c5ef0cbb 100644
--- a/docs/common/user_manual/releases/quoCapabilities.html
+++ b/docs/common/user_manual/releases/quoCapabilities.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/quoPlans.html b/docs/common/user_manual/releases/quoPlans.html
index c934a03f..16f7ceb9 100644
--- a/docs/common/user_manual/releases/quoPlans.html
+++ b/docs/common/user_manual/releases/quoPlans.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/quoReleaseNotes.html b/docs/common/user_manual/releases/quoReleaseNotes.html
index 1967cdba..517b4bfb 100644
--- a/docs/common/user_manual/releases/quoReleaseNotes.html
+++ b/docs/common/user_manual/releases/quoReleaseNotes.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/r2dCapabilities.html b/docs/common/user_manual/releases/r2dCapabilities.html
index d00c1ccf..8e6a0153 100644
--- a/docs/common/user_manual/releases/r2dCapabilities.html
+++ b/docs/common/user_manual/releases/r2dCapabilities.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -209,7 +207,7 @@
             
   <div class="section" id="capabilities">
 <span id="lbl-capabilities-eeuq"></span><h1>Capabilities<a class="headerlink" href="#capabilities" title="Permalink to this heading">¶</a></h1>
-<p><strong>Version</strong> 3.5 of EE-UQ app was released in <strong>April 2024</strong>, introducing significant updates and enhancements. This document outlines the functionalities available in the current version, highlighting new features and improvements marked in <span class="blue">blue</span>.</p>
+<p><strong>Version</strong> 3.5 of EE-UQ app was released in <strong>April 2024</strong>, introducing significant updates and enhancements. This document outlines the functionalities available in the current version, highlighting new features and improvements in <span class="blue">blue</span>.</p>
 <p>Major updates from Version 4.0 are adding liquefaction-induced ground deformation estimation in the <span class="blue">regional earthquake event generation tool</span>, refactored <span class="blue">regional inventory generation tool BRAILS</span>, and upgraded <span class="blue">damage and loss engine Pelicun</span>.</p>
 <p><strong>Release date:</strong> April, 2024</p>
 <ol class="arabic">
diff --git a/docs/common/user_manual/releases/r2dPlans.html b/docs/common/user_manual/releases/r2dPlans.html
index 932d9bbd..d816c816 100644
--- a/docs/common/user_manual/releases/r2dPlans.html
+++ b/docs/common/user_manual/releases/r2dPlans.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/r2dRelaseNotes.html b/docs/common/user_manual/releases/r2dRelaseNotes.html
index 95c49528..2f186fa9 100644
--- a/docs/common/user_manual/releases/r2dRelaseNotes.html
+++ b/docs/common/user_manual/releases/r2dRelaseNotes.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/r2dReleaseNotes.html b/docs/common/user_manual/releases/r2dReleaseNotes.html
index c736ebf5..47f9be86 100644
--- a/docs/common/user_manual/releases/r2dReleaseNotes.html
+++ b/docs/common/user_manual/releases/r2dReleaseNotes.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/weCapabilities.html b/docs/common/user_manual/releases/weCapabilities.html
index d5fd1903..6983bbe6 100644
--- a/docs/common/user_manual/releases/weCapabilities.html
+++ b/docs/common/user_manual/releases/weCapabilities.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/wePlans.html b/docs/common/user_manual/releases/wePlans.html
index 467bff8e..02494574 100644
--- a/docs/common/user_manual/releases/wePlans.html
+++ b/docs/common/user_manual/releases/wePlans.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/releases/weReleaseNotes.html b/docs/common/user_manual/releases/weReleaseNotes.html
index 12e8ec24..29d9a1a2 100644
--- a/docs/common/user_manual/releases/weReleaseNotes.html
+++ b/docs/common/user_manual/releases/weReleaseNotes.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/troubleshooting/desktop/troubleshooting.html b/docs/common/user_manual/troubleshooting/desktop/troubleshooting.html
index ace111cf..f7defcdf 100644
--- a/docs/common/user_manual/troubleshooting/desktop/troubleshooting.html
+++ b/docs/common/user_manual/troubleshooting/desktop/troubleshooting.html
@@ -142,10 +142,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/troubleshooting/desktop/troubleshootingRunning.html b/docs/common/user_manual/troubleshooting/desktop/troubleshootingRunning.html
index 1fd19c83..623d843a 100644
--- a/docs/common/user_manual/troubleshooting/desktop/troubleshootingRunning.html
+++ b/docs/common/user_manual/troubleshooting/desktop/troubleshootingRunning.html
@@ -142,10 +142,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/troubleshooting/desktop/troubleshootingStartup.html b/docs/common/user_manual/troubleshooting/desktop/troubleshootingStartup.html
index d9164d31..4f497622 100644
--- a/docs/common/user_manual/troubleshooting/desktop/troubleshootingStartup.html
+++ b/docs/common/user_manual/troubleshooting/desktop/troubleshootingStartup.html
@@ -142,10 +142,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/Configuring_CustomUQ.html b/docs/common/user_manual/usage/desktop/Configuring_CustomUQ.html
index b0126347..e99c7aac 100644
--- a/docs/common/user_manual/usage/desktop/Configuring_CustomUQ.html
+++ b/docs/common/user_manual/usage/desktop/Configuring_CustomUQ.html
@@ -138,10 +138,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaBayesianCalibration.html b/docs/common/user_manual/usage/desktop/DakotaBayesianCalibration.html
index 883c960f..e056cefa 100644
--- a/docs/common/user_manual/usage/desktop/DakotaBayesianCalibration.html
+++ b/docs/common/user_manual/usage/desktop/DakotaBayesianCalibration.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaDeterministicCalibration.html b/docs/common/user_manual/usage/desktop/DakotaDeterministicCalibration.html
index 8b000eb2..094c5b1b 100644
--- a/docs/common/user_manual/usage/desktop/DakotaDeterministicCalibration.html
+++ b/docs/common/user_manual/usage/desktop/DakotaDeterministicCalibration.html
@@ -137,10 +137,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaGradientFreeOptimization.html b/docs/common/user_manual/usage/desktop/DakotaGradientFreeOptimization.html
index 51c3292f..f2929a5e 100644
--- a/docs/common/user_manual/usage/desktop/DakotaGradientFreeOptimization.html
+++ b/docs/common/user_manual/usage/desktop/DakotaGradientFreeOptimization.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaReliability.html b/docs/common/user_manual/usage/desktop/DakotaReliability.html
index c15dd74e..80b68700 100644
--- a/docs/common/user_manual/usage/desktop/DakotaReliability.html
+++ b/docs/common/user_manual/usage/desktop/DakotaReliability.html
@@ -158,10 +158,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaSampling.html b/docs/common/user_manual/usage/desktop/DakotaSampling.html
index 8b77dee7..338cfea8 100644
--- a/docs/common/user_manual/usage/desktop/DakotaSampling.html
+++ b/docs/common/user_manual/usage/desktop/DakotaSampling.html
@@ -158,10 +158,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/DakotaSensitivity.html b/docs/common/user_manual/usage/desktop/DakotaSensitivity.html
index ad2ba3f1..1f96c201 100644
--- a/docs/common/user_manual/usage/desktop/DakotaSensitivity.html
+++ b/docs/common/user_manual/usage/desktop/DakotaSensitivity.html
@@ -157,10 +157,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/FEM.html b/docs/common/user_manual/usage/desktop/FEM.html
index 539d5c52..8ce34f62 100644
--- a/docs/common/user_manual/usage/desktop/FEM.html
+++ b/docs/common/user_manual/usage/desktop/FEM.html
@@ -154,10 +154,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/FEM_EEUQ_surrogate.html b/docs/common/user_manual/usage/desktop/FEM_EEUQ_surrogate.html
index 273db85b..b1b02b03 100644
--- a/docs/common/user_manual/usage/desktop/FEM_EEUQ_surrogate.html
+++ b/docs/common/user_manual/usage/desktop/FEM_EEUQ_surrogate.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/GI.html b/docs/common/user_manual/usage/desktop/GI.html
index a4249acf..0a8c35dc 100644
--- a/docs/common/user_manual/usage/desktop/GI.html
+++ b/docs/common/user_manual/usage/desktop/GI.html
@@ -148,10 +148,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/RV.html b/docs/common/user_manual/usage/desktop/RV.html
index 0710ec1e..36ad9fc4 100644
--- a/docs/common/user_manual/usage/desktop/RV.html
+++ b/docs/common/user_manual/usage/desktop/RV.html
@@ -133,10 +133,8 @@
 <li class="toctree-l2 current"><a class="current reference internal" href="#">2.7. RV: Random Variables</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#probability-distribution">2.7.1. Probability distribution</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="#dakota-engine">2.7.1.1. Dakota Engine</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#simcenteruq-engine">2.7.1.2. SimCenterUQ Engine</a></li>
 </ul>
 </li>
-<li class="toctree-l3"><a class="reference internal" href="#correlation-matrix">2.7.2. Correlation matrix</a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="response/resEE.html">2.8. RES: Results</a></li>
@@ -157,10 +155,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -294,35 +290,21 @@ <h3><span class="section-number">2.7.1.1. </span>Dakota Engine<a class="headerli
 <div class="align-center figure" id="id3">
 <a class="reference internal image-reference" href="../../../../_images/rvplot.png"><img alt="../../../../_images/rvplot.png" src="../../../../_images/rvplot.png" style="width: 800px;" /></a>
 <p class="caption"><span class="caption-number">Fig. 2.7.1.1.2 </span><span class="caption-text">Distributions offered by the EE-UQ app.</span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
-</div>
-<div class="admonition tip">
-<p class="admonition-title">Tip</p>
-<p>Summary of capabilities and limitations</p>
-<ul class="simple">
-<li><p><span class="sd-sphinx-override sd-badge sd-bg-primary sd-bg-text-primary">o</span> Specify 12 different kinds of random distributions either by parameters, moments (mean and variance), or data samples (Specify 7 different kinds of random distributions by parameters when using Dakota instead of SimCenterUQ)</p></li>
-<li><p><span class="sd-sphinx-override sd-badge sd-bg-primary sd-bg-text-primary">o</span> Draw correlated samples through Nataf transformation (Gaussian-copular)</p></li>
-<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Explicitly specify random fields (planned)</p></li>
-<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Specify user-defined random distribution (planned)</p></li>
-<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Specify Non-Gaussian copular correlation (upon request)</p></li>
-</ul>
-</div>
-</div>
-<div class="section" id="simcenteruq-engine">
-<h3><span class="section-number">2.7.1.2. </span>SimCenterUQ Engine<a class="headerlink" href="#simcenteruq-engine" title="Permalink to this heading">¶</a></h3>
+<div class="legend">
 <p>Five additional distributions are supported in the SimCenter UQ engine. The users can define distributions either by <strong>Parameters</strong>, <strong>Moments</strong> or <strong>Dataset</strong>. (<strong>Note</strong>: Nataf transform module developed by <a class="reference internal" href="#era19" id="id1"><span>[ERA19]</span></a> is adopted)</p>
 <ol class="arabic">
 <li><p>Exponential</p>
 <p>The user provides the parameter (<span class="math notranslate nohighlight">\(\lambda\)</span>) of the exponential distribution. The density function of the exponential distribution, as a function of <span class="math notranslate nohighlight">\(\lambda\)</span>, is:</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-6">
-<span class="eqno">(2.7.1.2.1)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-6" title="Permalink to this equation">¶</a></span>\[f(x) = \lambda \exp(-\lambda x)\]</div>
+<span class="eqno">(2.7.1.1.7)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-6" title="Permalink to this equation">¶</a></span>\[f(x) = \lambda \exp(-\lambda x)\]</div>
 <p>where <span class="math notranslate nohighlight">\(x&gt;0\)</span> and <span class="math notranslate nohighlight">\(\lambda&gt;0\)</span>. The user can alternatively provide the <strong>mean</strong> (<span class="math notranslate nohighlight">\(m\)</span>) of the exponential distribution.</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-7">
-<span class="eqno">(2.7.1.2.2)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-7" title="Permalink to this equation">¶</a></span>\[m = \frac{1}{\lambda}\]</div>
+<span class="eqno">(2.7.1.1.8)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-7" title="Permalink to this equation">¶</a></span>\[m = \frac{1}{\lambda}\]</div>
 </li>
 <li><p>Discrete</p>
 <p>The user provides the <span class="math notranslate nohighlight">\(N\)</span> discrete values (<span class="math notranslate nohighlight">\(x_i\)</span>) and their weights (probability <span class="math notranslate nohighlight">\(p_i\)</span>) for a multinomial distribution. The probability mass function of the discrete distribution is:</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-8">
-<span class="eqno">(2.7.1.2.3)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-8" title="Permalink to this equation">¶</a></span>\[\begin{split}p(x)=\begin{cases}
+<span class="eqno">(2.7.1.1.9)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-8" title="Permalink to this equation">¶</a></span>\[\begin{split}p(x)=\begin{cases}
         p_i, &amp; \text{if $x=x_i$}\\
         0, &amp; \text{otherwise}
 \end{cases}\end{split}\]</div>
@@ -331,31 +313,31 @@ <h3><span class="section-number">2.7.1.2. </span>SimCenterUQ Engine<a class="hea
 <li><p>Gamma</p>
 <p>The user provides the shape parameter (<span class="math notranslate nohighlight">\(k\)</span>) and scale parameter (<span class="math notranslate nohighlight">\(\lambda\)</span>) of the Gamma distribution. The density function of the Gamma distribution, as a function of <span class="math notranslate nohighlight">\(k\)</span> and <span class="math notranslate nohighlight">\(\lambda\)</span>, is:</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-9">
-<span class="eqno">(2.7.1.2.4)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-9" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{\lambda^kx^{k-1}\exp(-\lambda x)}{\Gamma(k)}\]</div>
+<span class="eqno">(2.7.1.1.10)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-9" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{\lambda^kx^{k-1}\exp(-\lambda x)}{\Gamma(k)}\]</div>
 <p>where <span class="math notranslate nohighlight">\(\lambda&gt;0\)</span> and <span class="math notranslate nohighlight">\(k&gt;0\)</span>. Users can alternatively provide the <strong>mean</strong> (<span class="math notranslate nohighlight">\(m\)</span>) and <strong>standard deviation</strong> (<span class="math notranslate nohighlight">\(\sigma\)</span>).</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-10">
-<span class="eqno">(2.7.1.2.5)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-10" title="Permalink to this equation">¶</a></span>\[\begin{split}m &amp;= \frac{k}{\lambda} \\
+<span class="eqno">(2.7.1.1.11)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-10" title="Permalink to this equation">¶</a></span>\[\begin{split}m &amp;= \frac{k}{\lambda} \\
 \sigma &amp;= \sqrt{\frac{k}{\lambda^2}}\end{split}\]</div>
 </li>
 <li><p>Chi-squared</p>
 <p>The user provides the parameter <span class="math notranslate nohighlight">\(k\)</span> of the Chi-squared distribution. The density function of the Chi-squared distribution, as a function of <span class="math notranslate nohighlight">\(k\)</span>, is</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-11">
-<span class="eqno">(2.7.1.2.6)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-11" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{1}{2^{\frac{k}{2}}\Gamma\left(\frac{k}{2}\right)}x^{\left(\frac{k}{2}-1\right)} \exp\left(-\frac{x}{2}\right)\]</div>
+<span class="eqno">(2.7.1.1.12)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-11" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{1}{2^{\frac{k}{2}}\Gamma\left(\frac{k}{2}\right)}x^{\left(\frac{k}{2}-1\right)} \exp\left(-\frac{x}{2}\right)\]</div>
 <p>where <span class="math notranslate nohighlight">\(x&gt;0\)</span> and <span class="math notranslate nohighlight">\(k\)</span> is a natural number. Users can alternatively select the moment option where the <strong>mean</strong> (<span class="math notranslate nohighlight">\(m\)</span>) is</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-12">
-<span class="eqno">(2.7.1.2.7)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-12" title="Permalink to this equation">¶</a></span>\[m = k\]</div>
+<span class="eqno">(2.7.1.1.13)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-12" title="Permalink to this equation">¶</a></span>\[m = k\]</div>
 </li>
 <li><p>Truncated exponential</p>
 <p>The user provides the parameter <span class="math notranslate nohighlight">\(k\)</span> and bounds <span class="math notranslate nohighlight">\(L_B\)</span> and <span class="math notranslate nohighlight">\(U_B\)</span> for the truncated exponential distribution. The density function of the truncated exponential distribution is</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-13">
-<span class="eqno">(2.7.1.2.8)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-13" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{\lambda}{c} \exp(-\lambda x), \text{  where $L_B&lt;x&lt;U_B$}\]</div>
+<span class="eqno">(2.7.1.1.14)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-13" title="Permalink to this equation">¶</a></span>\[f(x) = \frac{\lambda}{c} \exp(-\lambda x), \text{  where $L_B&lt;x&lt;U_B$}\]</div>
 <p>where <span class="math notranslate nohighlight">\(c\)</span> is a normalization constant, i.e.</p>
 <div class="math notranslate nohighlight" id="equation-common-user-manual-usage-desktop-rv-14">
-<span class="eqno">(2.7.1.2.9)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-14" title="Permalink to this equation">¶</a></span>\[c = \int_{L_B}^{U_B} \lambda\exp(-\lambda x) dx\]</div>
+<span class="eqno">(2.7.1.1.15)<a class="headerlink" href="#equation-common-user-manual-usage-desktop-rv-14" title="Permalink to this equation">¶</a></span>\[c = \int_{L_B}^{U_B} \lambda\exp(-\lambda x) dx\]</div>
 <p>where <span class="math notranslate nohighlight">\(x&gt;0\)</span> and <span class="math notranslate nohighlight">\(\lambda&gt;0\)</span>. Users can alternatively provide the <strong>mean</strong> of the distribution along with the <strong>truncated bounds</strong>.</p>
 <div class="align-center figure" id="id4">
 <a class="reference internal image-reference" href="../../../../_images/rv5.png"><img alt="../../../../_images/rv5.png" src="../../../../_images/rv5.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.7.1.2.1 </span><span class="caption-text">Extended random variable specification</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.7.1.1.3 </span><span class="caption-text">Extended random variable specification</span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
 </div>
 </li>
 </ol>
@@ -363,7 +345,7 @@ <h3><span class="section-number">2.7.1.2. </span>SimCenterUQ Engine<a class="hea
 <p>Users can also define the random variables by providing a sample realization data set as shown in the below figure, by selecting the <code class="docutils literal notranslate"><span class="pre">Dataset</span></code> input type. The data will be fitted to the specified probability distribution model. Note that for some bounded distributions, such as beta and truncated exponential, the bounds should additionally be provided through the user interface.</p>
 <div class="align-center figure" id="id5">
 <a class="reference internal image-reference" href="../../../../_images/rv3.png"><img alt="../../../../_images/rv3.png" src="../../../../_images/rv3.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.7.1.2.2 </span><span class="caption-text">Example of the input dataset file</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.7.1.1.4 </span><span class="caption-text">Example of the input dataset file</span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
 </div>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
@@ -376,14 +358,10 @@ <h3><span class="section-number">2.7.1.2. </span>SimCenterUQ Engine<a class="hea
 <dd><p>Engineering Risk Analysis Group, Technische Universität München: <a class="reference external" href="https://www.bgu.tum.de/era/software/eradist/">https://www.bgu.tum.de/era/software/eradist/</a> (Matlab/python programs and documentations)</p>
 </dd>
 </dl>
-</div>
-</div>
-<div class="section" id="correlation-matrix">
-<h2><span class="section-number">2.7.2. </span>Correlation matrix<a class="headerlink" href="#correlation-matrix" title="Permalink to this heading">¶</a></h2>
 <p>Correlation coefficients between each variable can be defined by clicking the <code class="docutils literal notranslate"><span class="pre">Correlation</span> <span class="pre">Matrix</span></code> button. Default correlations between variables are set to zero. The diagonal element of the matrix is fixed as one, and symmetry of the correlation matrix is enforced once the entries of the lower triangular part of the matrix are modified.</p>
-<div class="align-center figure" id="id7">
+<div class="align-center figure" id="id6">
 <a class="reference internal image-reference" href="../../../../_images/rv4.png"><img alt="../../../../_images/rv4.png" src="../../../../_images/rv4.png" style="width: 800px;" /></a>
-<p class="caption"><span class="caption-number">Fig. 2.7.2.1 </span><span class="caption-text">Example of a valid correlation matrix</span><a class="headerlink" href="#id7" title="Permalink to this image">¶</a></p>
+<p class="caption"><span class="caption-number">Fig. 2.7.1.1.5 </span><span class="caption-text">Example of a valid correlation matrix</span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
 </div>
 <p>Once the <code class="docutils literal notranslate"><span class="pre">OK</span></code> button is clicked after setting all required entries, the program will automatically check the validity of the matrix before closing the correlation matrix window. If the matrix is not <strong>positive definite</strong>, an error message will be displayed and the window will not be closed. In such a case, the user should adjust the correlation coefficients to be positive definite.</p>
 <div class="admonition note">
@@ -398,6 +376,20 @@ <h2><span class="section-number">2.7.2. </span>Correlation matrix<a class="heade
 <p>Correlation warping for Nataf variable transformation of <strong>beta</strong> distributions is currently not supported.</p>
 </div>
 </div>
+</div>
+<div class="admonition tip">
+<p class="admonition-title">Tip</p>
+<p>Summary of capabilities and limitations</p>
+<ul class="simple">
+<li><p><span class="sd-sphinx-override sd-badge sd-bg-primary sd-bg-text-primary">o</span> Specify 12 different kinds of random distributions either by parameters, moments (mean and variance), or data samples (Specify 7 different kinds of random distributions by parameters when using Dakota instead of SimCenterUQ)</p></li>
+<li><p><span class="sd-sphinx-override sd-badge sd-bg-primary sd-bg-text-primary">o</span> Draw correlated samples through Nataf transformation (Gaussian-copular)</p></li>
+<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Explicitly specify random fields (planned)</p></li>
+<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Specify user-defined random distribution (planned)</p></li>
+<li><p><span class="sd-sphinx-override sd-badge sd-bg-danger sd-bg-text-danger">x</span> Specify Non-Gaussian copular correlation (upon request)</p></li>
+</ul>
+</div>
+</div>
+</div>
 </div>
 
 
diff --git a/docs/common/user_manual/usage/desktop/SIM.html b/docs/common/user_manual/usage/desktop/SIM.html
index 926413d5..a2305a3b 100644
--- a/docs/common/user_manual/usage/desktop/SIM.html
+++ b/docs/common/user_manual/usage/desktop/SIM.html
@@ -158,10 +158,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -388,7 +386,7 @@ <h2><span class="section-number">2.3.6. </span>MDOF-LU Building Model<a class="h
 <th class="head"><p>a_k</p></th>
 <th class="head"><p>omega</p></th>
 <th class="head"><p>damage1</p></th>
-<th class="head"><p>dmamge2</p></th>
+<th class="head"><p>damage2</p></th>
 <th class="head"><p>damage3</p></th>
 <th class="head"><p>damage4</p></th>
 <th class="head"><p>T1</p></th>
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQ.html b/docs/common/user_manual/usage/desktop/SimCenterUQ.html
index fbaa03ff..89f47a5a 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQ.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQ.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQMF.html b/docs/common/user_manual/usage/desktop/SimCenterUQMF.html
index 2e7a3b54..fd22899c 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQMF.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQMF.html
@@ -160,10 +160,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQPLoM.html b/docs/common/user_manual/usage/desktop/SimCenterUQPLoM.html
index 63089b96..26a9a819 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQPLoM.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQPLoM.html
@@ -159,10 +159,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQSampling.html b/docs/common/user_manual/usage/desktop/SimCenterUQSampling.html
index 6f86a924..cdbb16d8 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQSampling.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQSampling.html
@@ -160,10 +160,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -244,7 +242,7 @@ <h2>Sampling from dataset<a class="headerlink" href="#sampling-from-dataset" tit
 <div class="align-center figure" id="figsimsamp3">
 <a class="reference internal image-reference" href="../../../../_images/SimUQ_sampling3.png"><img alt="../../../../_images/SimUQ_sampling3.png" src="../../../../_images/SimUQ_sampling3.png" style="width: 1200px;" /></a>
 </div>
-<p>Click the check box to import correlated datasets</p>
+<p>Click the checkbox to import correlated datasets</p>
 <p>To enable this feature, the user can explicitly define the group of RVs that will share the index samples in the UQ tab using the <code class="docutils literal notranslate"><span class="pre">Resample</span> <span class="pre">RVs</span> <span class="pre">from</span> <span class="pre">correlated</span> <span class="pre">dataset</span></code>:</p>
 <blockquote>
 <div><ul class="simple">
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQSensitivity.html b/docs/common/user_manual/usage/desktop/SimCenterUQSensitivity.html
index 2e75556c..34208747 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQSensitivity.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQSensitivity.html
@@ -160,10 +160,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/SimCenterUQSurrogate.html b/docs/common/user_manual/usage/desktop/SimCenterUQSurrogate.html
index e4dbc3e0..199ea535 100644
--- a/docs/common/user_manual/usage/desktop/SimCenterUQSurrogate.html
+++ b/docs/common/user_manual/usage/desktop/SimCenterUQSurrogate.html
@@ -160,10 +160,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/UCSD_UQ_Hierarchical.html b/docs/common/user_manual/usage/desktop/UCSD_UQ_Hierarchical.html
index a2bd857f..a6a6027e 100644
--- a/docs/common/user_manual/usage/desktop/UCSD_UQ_Hierarchical.html
+++ b/docs/common/user_manual/usage/desktop/UCSD_UQ_Hierarchical.html
@@ -138,10 +138,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/UCSD_UQ_TMCMC.html b/docs/common/user_manual/usage/desktop/UCSD_UQ_TMCMC.html
index f4bed3ca..37173f7c 100644
--- a/docs/common/user_manual/usage/desktop/UCSD_UQ_TMCMC.html
+++ b/docs/common/user_manual/usage/desktop/UCSD_UQ_TMCMC.html
@@ -139,10 +139,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/UQ.html b/docs/common/user_manual/usage/desktop/UQ.html
index 99acda20..2fa628eb 100644
--- a/docs/common/user_manual/usage/desktop/UQ.html
+++ b/docs/common/user_manual/usage/desktop/UQ.html
@@ -164,10 +164,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
@@ -243,7 +241,7 @@
 <p>The <strong>UQ Engine</strong> options currently available are Dakota and SimCenterUQ.</p>
 <div class="section" id="dakota-uq-engine">
 <h2><span class="section-number">2.1.2. </span>Dakota UQ Engine<a class="headerlink" href="#dakota-uq-engine" title="Permalink to this heading">¶</a></h2>
-<p>This UQ engine utilizes the <a class="reference external" href="https://dakota.sandia.gov/">Dakota Software</a>, a state-of-the-art research application that is robust and provides many methods for optimization and UQ, a selection of which we utilize in this application. <strong>Dakota</strong> provides the user with a large number of methods for different kinds of analyses. For this reason, we have divided the methods into categories through a pull-down menu, as shown below. Once the category has been selected, a number of different methods are made available to the user.</p>
+<p>This UQ engine utilizes the <a class="reference external" href="https://dakota.sandia.gov/">Dakota Software</a>, a state-of-the-art research application that is robust and provides many methods for optimization and UQ, a selection of which we utilize in this application. <strong>Dakota</strong> provides the user with several methods for different kinds of analyses. For this reason, we have divided the methods into categories through a pull-down menu, as shown below. Once the category has been selected, a few different methods are made available to the user.</p>
 <ul class="simple">
 <li><p>By checking the <code class="docutils literal notranslate"><span class="pre">Parallel</span> <span class="pre">Execution</span></code>, the UQ analysis will be performed in parallel. It will try to use all the processors available on the machine.</p></li>
 <li><p>By checking the <code class="docutils literal notranslate"><span class="pre">Save</span> <span class="pre">Working</span> <span class="pre">dirs</span></code>, individual working directories will be saved in the Local Jobs Directory. Local Jobs Directory is defined at <code class="docutils literal notranslate"><span class="pre">File</span></code>-<code class="docutils literal notranslate"><span class="pre">Preference</span></code> in the menubar. Otherwise, individual simulation files will be deleted after each simulation run. Users might uncheck this box when a large number of simulations is requested, to manage driver space.</p></li>
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--- a/docs/common/user_manual/usage/desktop/earthquake/earthquakeEvents.html
+++ b/docs/common/user_manual/usage/desktop/earthquake/earthquakeEvents.html
@@ -157,10 +157,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/earthquake/multipleExisting.html b/docs/common/user_manual/usage/desktop/earthquake/multipleExisting.html
index 57b21df7..1c7ad91b 100644
--- a/docs/common/user_manual/usage/desktop/earthquake/multipleExisting.html
+++ b/docs/common/user_manual/usage/desktop/earthquake/multipleExisting.html
@@ -157,10 +157,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
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index 533cf504..fb70a895 100644
--- a/docs/common/user_manual/usage/desktop/earthquake/multiplePEER.html
+++ b/docs/common/user_manual/usage/desktop/earthquake/multiplePEER.html
@@ -157,10 +157,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/usage/desktop/earthquake/peerNGA.html b/docs/common/user_manual/usage/desktop/earthquake/peerNGA.html
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--- a/docs/common/user_manual/usage/desktop/earthquake/peerNGA.html
+++ b/docs/common/user_manual/usage/desktop/earthquake/peerNGA.html
@@ -165,10 +165,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/CustomPySimulation.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/CustomPySimulation.html
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
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--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputReliability.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputReliability.html
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSampling.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSampling.html
index 44895689..2a591800 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSampling.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSampling.html
@@ -136,10 +136,8 @@
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 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSensitivity.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSensitivity.html
index 66fa3dff..dc31cd26 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSensitivity.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSensitivity.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP.html
index ebc0536a..fc7622f3 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP_EarthquakeSelection.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP_EarthquakeSelection.html
index 3d7b5185..ab4e2481 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP_EarthquakeSelection.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP_EarthquakeSelection.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExampleWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExampleWidget.html
index 64930a43..d6587c79 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExampleWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExampleWidget.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExistingSimCenterEvents.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExistingSimCenterEvents.html
index f88aef40..4be06e19 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExistingSimCenterEvents.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExistingSimCenterEvents.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GaussianProcessInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GaussianProcessInputWidget.html
index 1180484b..16d63abc 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GaussianProcessInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GaussianProcessInputWidget.html
@@ -136,10 +136,8 @@
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 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GlobalReliabilityWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GlobalReliabilityWidget.html
index d5e17fa3..d6ae2b23 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GlobalReliabilityWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GlobalReliabilityWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportSamplesWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportSamplesWidget.html
index 77f98c37..292637ed 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportSamplesWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportSamplesWidget.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportanceSamplingInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportanceSamplingInputWidget.html
index 2d2fa5dc..0ad6a39d 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportanceSamplingInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportanceSamplingInputWidget.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetBIM.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetBIM.html
index 6f8c7842..e0df8272 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetBIM.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetBIM.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetExistingEvent.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetExistingEvent.html
index 8891c5e3..ec2be7e6 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetExistingEvent.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetExistingEvent.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetOpenSeesAnalysis.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetOpenSeesAnalysis.html
index 706dcf09..5da4e1a9 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetOpenSeesAnalysis.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetOpenSeesAnalysis.html
@@ -136,10 +136,8 @@
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LatinHypercubeInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LatinHypercubeInputWidget.html
index cf0da199..c14cca46 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LatinHypercubeInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LatinHypercubeInputWidget.html
@@ -136,10 +136,8 @@
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 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LocalReliabilityWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LocalReliabilityWidget.html
index 8e445698..961fe428 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LocalReliabilityWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LocalReliabilityWidget.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_BuildingModel.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_BuildingModel.html
index 9bd9d6e6..937e5f33 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_BuildingModel.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_BuildingModel.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_LU.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_LU.html
index 7256b2d3..7d01e0d6 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_LU.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_LU.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputSimWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputSimWidget.html
index a88137c2..1ac6916c 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputSimWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputSimWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputWidget.html
index e36fdc9a..7feaf6b5 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelityMonteCarlo.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelityMonteCarlo.html
index 67d3d8d0..a286801f 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelityMonteCarlo.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelityMonteCarlo.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelitySimWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelitySimWidget.html
index 053cbf91..e11cf41d 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelitySimWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelitySimWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/NoneEngine.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/NoneEngine.html
index 902f7bff..eba22aec 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/NoneEngine.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/NoneEngine.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/OpenSeesBuildingModel.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/OpenSeesBuildingModel.html
index 5ade90ff..86221971 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/OpenSeesBuildingModel.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/OpenSeesBuildingModel.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.html
index c93ca48e..db52f6b8 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.html
index d3f4b5e2..02ba4d09 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.html
index c29f9019..c345a3d2 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.html
index 508710bf..8b4b7c4f 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.html
index f535331b..6f7c1864 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.html
index 3c43dc7e..2ab6e419 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.html
index f1415f5e..4160c0af 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.html
index 8fd14731..1fe53046 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.html
index fc742f74..24f8a0d5 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.html
index 06a9d283..0cc37edd 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.html
index 7720009e..88f070e9 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
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diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.html
index 61250ec0..25ea188e 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.html
index e3bd6101..727eb235 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.html
@@ -136,10 +136,8 @@
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 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_build/desktop/how_to_build.html">1. How to Build</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.html
index 12b231f1..962b0fee 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.html
index ba925c9b..b6dd37b3 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.html
index 968c8909..832ff491 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.html
index c2b43d83..55fe27e1 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.html
@@ -136,10 +136,8 @@
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 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.html
index 8e7756d0..947f6d7f 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/architecture/desktop/architecture.html">2. Software Architecture</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.html
index 8b9c7a6d..cfb3fe0b 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">3. Verification</a></li>
 </ul>
 
             
diff --git a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.html b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.html
index b1ba7936..2af184f6 100644
--- a/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.html
+++ b/docs/common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.html
@@ -136,10 +136,8 @@
 <p class="caption" role="heading"><span class="caption-text">Developer Manual</span></p>
 <ul>
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-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend/desktop/how_to_extend.html">3. How to Extend</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/verification/desktop/verification.html">4. Verification</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/coding_style/desktop/coding_style.html">5. Coding Style</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../developer_manual/how_to_extend.html">2. How to Extend</a></li>
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"common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputHierarchicalBayesian.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputTMCMC.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UQpyStretch.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UQpySubsetSimulation.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UserDefinedEDP.rst", "index.rst"], "titles": ["Syllabus", "By Day", "By Topic", "<span class=\"section-number\">2.2.9. </span>DL Applications", "<span class=\"section-number\">2.2.5. </span>EDP Applications", "<span class=\"section-number\">2.2.7. </span>UQ Applications", "<span class=\"section-number\">2.2.8. </span>Building Applications", "<span class=\"section-number\">2.2.3. </span>Event Applications", "<span class=\"section-number\">2.2.4. </span>Modeling Applications", "<span class=\"section-number\">2.2.1. </span>FEM Pre-processors", "<span class=\"section-number\">2.2.2. </span>UQ Pre-processors", "<span class=\"section-number\">2.2.10. </span>Regional Mapping Applications", "<span class=\"section-number\">2.2.6. </span>Simulation Applications", "<span class=\"section-number\">2. </span>Software Architecture", "Software Architecture", "<span class=\"section-number\">2.2. </span>Backend Applications", "<span class=\"section-number\">2.3. </span>C4 Model of Software Architecture", "Level 4 Dynamic Diagrams", "<span class=\"section-number\">2.1. </span>File Types and Schemas", "<span class=\"section-number\">2.1.1. </span>Inputs", "<span class=\"section-number\">2.1.2. </span>Outputs", "Running Manually", "Run Locally on Your Desktop", "Run Remotely on DesignSafe", "Troubleshooting Errors", "Creating Workflows", "Reading the Log File", "Choosing Component Applications", "Workflow Structure", "<span class=\"section-number\">5. </span>Coding Style", "Earthquake Assessment", "Examples", "Hurricane Assessment", "Regional Site Response Assessment", "Build the Backend", "<span class=\"section-number\">1. </span>How to Build", "Build the Backend", "<span class=\"section-number\">3. </span>How to Extend", "<span class=\"section-number\">4.1. </span>Earthquake Response of Portal Frame", "<span class=\"section-number\">4.2. </span>Response to Stochastic Ground Motion", "<span class=\"section-number\">4. </span>Verification", "B.10.31 - Steel Columns", "B.10.33 - Steel Braces", "B.10.35 - Steel Connections", "B.10.41 - RC or Composite Columns", "B.10.42 - RC or Composite Beams", "B.10.44 - RC or Composite Shearwalls", "B.10.49 - RC Flat Slabs", "B.10.51 - Ordinary Reinforced Masonry Walls", "B.10.52 - Special Reinforced Masonry Walls", "B.10.61 - Cold-formed Steel Walls", "B.10.71 - Wood Light Frame", "B.10 - Super Structure", "B.20.11 - Exterior Walls", "B.20.22 - Curtain Walls", "B.20.23 - Storefronts", "B.20 - Exterior Enclosure", "B.30.11 - Roof Coverings", "B.30.31 - Masonry Chimney", "B.30.41 - Masonry Parapet", "B.30 - Roofing", "B - Shell", "C.10.11 - Partitions", "C.10 - Interior Construction", "C.20.11 - Stair Construction", "C.20 - Stairs", "C.30.11 - Wall Finishes", "C.30.21 - Floor Finishes", "C.30.27 - Access Pedastal Flooring", "C.30.32 - Ceiling Finishes", "C.30.34 - Independent Pendant Lighting", "C.30 - Interior Finishes", "C - Interiors", "D.10.14 - Elevators &amp; Lifts", "D.10 - Conveying", "D.20.21 - Domestic Water Distribution - Cold Water", "D.20.22 - Domestic Water Distribution - Hot Water", "D.20.31 - Sanitary Waste", "D.20.51 - Chilled Water Distribution", "D.20.61 - Steam Distribution", "D.20 - Plumbing", "D.30.31 - Cooling Generating Systems - Chilled Water", "D.30.32 - Cooling Generating Systems - Direct Expansion", "D.30.41 - Air Distribution Systems", "D.30.52 - Terminal &amp; Package Units", "D.30.67 - Controls and Instrumentation", "D.30 - HVAC", "D.40.11 - Sprinklers", "D.40 - Fire Protection", "D.50.11 - Electrical Service &amp; Distribution - High Tension", "D.50.12 - Electrical Service &amp; Distribution - Low Tension", "D.50.92 - Other Electrical Systems", "D.50 - Electrical", "D - Services", "E.20.22 - Movable Furnishings", "E.20 - Furnishings", "E - Equipments and furnishings", "F.10.12 - Special Structures", "F.10 - Special Construction", "F - Special Construction &amp; Demolition", "FEMA P-58 2nd Edition", "GF.H - Horizontal Spreading", "GF.V - Vertical Settlement", "GF - Geotechnical Failure", "LF.C1 - Concrete Moment Frame", "LF.C2 - Concrete Shear Walls", "LF.C3 - Concrete Frame with Unreinforced Masonry Infill Walls", "LF.MH - Mobile Homes", "LF.PC1 - Precast Concrete Tilt-Up Walls", "LF.PC2 - Precast Concrete Frames with Concrete Shear Walls", "LF.RM1 - Reinforced Masonry Bearing Walls with Wood or Metal Deck Diaphragms", "LF.RM2 - Reinforced Masonry Bearing Walls with Precast Concrete Diaphragms", "LF.S1 - Steel Moment Frame", "LF.S2 - Steel Braced Frame", "LF.S3 - Steel Light Frame", "LF.S4 - Steel Frame with Cast-in-Place Concrete Shear Walls", "LF.S5 - Steel Frame with Unreinforced Masonry Infill Walls", "LF.URM - Unreinforced Masonry Bearing Walls", "LF.W1 - Wood, Light Frame", "LF.W2 - Wood, Commercial &amp; Industrial", "LF - Lifeline Facilities", "NSA - Non-Structural Acceleration-Sensitive", "NSD - Non-Structural Drift-Sensitive", "STR.C1 - Concrete Moment Frame", "STR.C2 - Concrete Shear Walls", "STR.C3 - Concrete Frame with Unreinforced Masonry Infill Walls", "STR.MH - Mobile Homes", "STR.PC1 - Precast Concrete Tilt-Up Walls", "STR.PC2 - Precast Concrete Frames with Concrete Shear Walls", "STR.RM1 - Reinforced Masonry Bearing Walls with Wood or Metal Deck Diaphragms", "STR.RM2 - Reinforced Masonry Bearing Walls with Precast Concrete Diaphragms", "STR.S1 - Steel Moment Frame", "STR.S2 - Steel Braced Frame", "STR.S3 - Steel Light Frame", "STR.S4 - Steel Frame with Cast-in-Place Concrete Shear Walls", "STR.S5 - Steel Frame with Unreinforced Masonry Infill Walls", "STR.URM - Unreinforced Masonry Bearing Walls", "STR.W1 - Wood, Light Frame", "STR.W2 - Wood, Commercial &amp; Industrial", "STR - Structural", "Hazus Earthquake Methodology - Buildings", "HRD - Road segments", "HTU - Tunnels", "HWB - Bridges", "Hazus Earthquake Methodology - Transportation", "Damage Models", "B.10.31 - Steel Columns", "B.10.33 - Steel Braces", "B.10.35 - Steel Connections", "B.10.41 - RC or Composite Columns", "B.10.42 - RC or Composite Beams", "B.10.44 - RC or Composite Shearwalls", "B.10.49 - RC Flat Slabs", "B.10.51 - Ordinary Reinforced Masonry Walls", "B.10.52 - Special Reinforced Masonry Walls", "B.10.61 - Cold-formed Steel Walls", "B.10.71 - Wood Light Frame", "B.10 - Super Structure", "B.20.11 - Exterior Walls", "B.20.22 - Curtain Walls", "B.20.23 - Storefronts", "B.20 - Exterior Enclosure", "B.30.11 - Roof Coverings", "B.30.31 - Masonry Chimney", "B.30.41 - Masonry Parapet", "B.30 - Roofing", "B - Shell", "C.10.11 - Partitions", "C.10 - Interior Construction", "C.20.11 - Stair Construction", "C.20 - Stairs", "C.30.11 - Wall Finishes", "C.30.21 - Floor Finishes", "C.30.27 - Access Pedastal Flooring", "C.30.32 - Ceiling Finishes", "C.30.34 - Independent Pendant Lighting", "C.30 - Interior Finishes", "C - Interiors", "D.10.14 - Elevators &amp; Lifts", "D.10 - Conveying", "D.20.21 - Domestic Water Distribution - Cold Water", "D.20.22 - Domestic Water Distribution - Hot Water", "D.20.31 - Sanitary Waste", "D.20.51 - Chilled Water Distribution", "D.20.61 - Steam Distribution", "D.20 - Plumbing", "D.30.31 - Cooling Generating Systems - Chilled Water", "D.30.32 - Cooling Generating Systems - Direct Expansion", "D.30.41 - Air Distribution Systems", "D.30.52 - Terminal &amp; Package Units", "D.30.67 - Controls and Instrumentation", "D.30 - HVAC", "D.40.11 - Sprinklers", "D.40 - Fire Protection", "D.50.11 - Electrical Service &amp; Distribution - High Tension", "D.50.12 - Electrical Service &amp; Distribution - Low Tension", "D.50.92 - Other Electrical Systems", "D.50 - Electrical", "D - Services", "E.20.22 - Movable Furnishings", "E.20 - Furnishings", "E - Equipments and furnishings", "F.10.12 - Special Structures", "F.10 - Special Construction", "F - Special Construction &amp; Demolition", "FEMA P-58 2nd Edition", "LF - Lifeline Facilities", "NSA - Non-Structural Acceleration-Sensitive", "NSD - Non-Structural Drift-Sensitive", "STR - Structural", "Hazus Earthquake Methodology - Buildings", "HRD - Road segments", "HTU - Tunnels", "HWB - Bridges", "Hazus Earthquake Methodology - Transportation", "Repair Consequence Models", "<span class=\"section-number\">9. </span>Abbreviations", "<span class=\"section-number\">4. </span>How To Cite", "<span class=\"section-number\">2. </span>Acknowledgments", "Acknowledgments", "<span class=\"section-number\">8. </span>Glossary", "<span class=\"section-number\">3. </span>Copyright and License", "R2D Requirements", "Requirements", "General Requirements", "<span class=\"section-number\">5. </span>Requirements", "&lt;no title&gt;", "Requirements", "Requirements", "Regional Earthquake Hazard Use Cases", "<span class=\"section-number\">2. </span>Methods in SimCenterUQ Engine", "Methods in UCSD UQ Engine", "<span class=\"section-number\">3. </span>Damping Options", "Hazard Occurrence", "<span class=\"section-number\">4. </span>Ground Motion Intensity Spatial Correlation Model Options", "&lt;no title&gt;", "<span class=\"section-number\">1. </span>Dakota Methods", "Anchorage, AK", "Asset Description", "Asset Representation", "Best Practices", "Damage and Loss Estimation", "Getting Started", "Feedback", "Opportunity Areas for Future Refinements", "Hazard Characterization", "Atlantic County, NJ", "Overview", "Preface", "Standard Wind Speed Conversions", "Response Simulation", "Verification Results", "Uncertainty Quantification", "Asset Description", "Asset Representation", "Best Practices", "Damage and Loss Estimation", "Getting Started", "Feedback", "Research Opportunities", "Hazard Characterization", "Lake Charles, LA", "Overview", "Response Simulation", "Verification Results", "Uncertainty Quantification", "Validation Results", "Asset Description", "Asset Representation", "Damage and Loss Estimation", "Opportunity Areas for Future Refinements", "Hazard Characterization", "Memphis, TN", "Network Performance Assessment", "Overview", "Response Simulation", "Sample Results", "Uncertainty Quantification", "Asset Description", "Damage and Loss Estimation", "Example Outputs", "Feedback and Data Request", "Opportunity Areas for Future Refinements", "Hazard Characterization", "San Francisco, CA", "Overview", "Response Simulation", "Uncertainty Quantification", "<span class=\"section-number\">1. </span>About", "About", "<span class=\"section-number\">6. </span>Bugs &amp; Feature Requests", "<span class=\"section-number\">3.1. </span>Sampling, Reliability and Sensitivity Analysis of a Shear Building", "<span class=\"section-number\">3.2. </span>Site Response Analysis with Spatial Variability", "<span class=\"section-number\">3.3. </span>PEER Ground Motion Selection and Nonlinear Response Analysis", "<span class=\"section-number\">3.4. </span>AutoSDA and Nonlinear Response Analysis", "<span class=\"section-number\">3.5. </span>Synthetic Ground Motion Applied to a Shear Buildilng", "<span class=\"section-number\">3.6. </span>PLoM Surrogate Model", "<span class=\"section-number\">3.7. </span>Target Spectrum by Surrogate Hazard GP Model", "<span class=\"section-number\">3.8. </span>Using Multiple Models and Analysis Options in EE-UQ", "<span class=\"section-number\">3.9. </span>Training GP Surrogate Model", "<span class=\"section-number\">3.10. </span>Prediction from GP Surrogate Model", "<span class=\"section-number\">3.11. </span>Multi-fidelity Monte Carlo Simulation", "<span class=\"section-number\">3. </span>Examples", "Install Additional Applications", "MacOS Users", "Windows Users", "<span class=\"section-number\">1.1. </span>Install on Windows 10", "<span class=\"section-number\">1.2. </span>Install on MacOS", "<span class=\"section-number\">1. </span>Installation", "<span class=\"section-number\">5. </span>Capabilities", "<span class=\"section-number\">7. </span>Release Plans", "<span class=\"section-number\">6. </span>Release Notes", "Capabilities", "Release Plans", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "<span class=\"section-number\">4. </span>Troubleshooting", "<span class=\"section-number\">4.2. </span>Issues While Running", "<span class=\"section-number\">4.1. </span>Startup Issues", "<span class=\"section-number\">2.1.5.1. </span>Configuring CustomUQ Engine", "Bayesian Calibration", "Deterministic Calibration", "Gradient-free Parameter Estimation", "<span class=\"section-number\">2.1.2.3. </span>Reliability Analysis", "<span class=\"section-number\">2.1.2.1. </span>Forward Propagation", "<span class=\"section-number\">2.1.2.2. </span>Global Sensitivity Analysis", "<span class=\"section-number\">2.5. </span>FEM: Finite Element Method", "Surrogate (GP)", "<span class=\"section-number\">2.2. </span>GI: General Information", "<span class=\"section-number\">2.7. </span>RV: Random Variables", "<span class=\"section-number\">2.3. </span>SIM: Structural Model", "SimCenter UQ Engine", "<span class=\"section-number\">2.1.3.5. </span>Multi-fidelity Monte Carlo", "<span class=\"section-number\">2.1.3.4. </span>Probabilistic Learning on Manifolds (PLoM)", "<span class=\"section-number\">2.1.3.1. </span>Forward Propagation", "<span class=\"section-number\">2.1.3.2. </span>Global Sensitivity Analysis", "<span class=\"section-number\">2.1.3.3. </span>Gaussian Process (GP) Surrogate Modeling", "<span class=\"section-number\">2.1.4.2. </span>Calibration of Hierarchical Model", "<span class=\"section-number\">2.1.4.1. </span>Calibration of Non-hierarchical Model", "<span class=\"section-number\">2.1. </span>UQ: Uncertainty Quantification", "<span class=\"section-number\">2.4. </span>EVT: Earthquake Events", "<span class=\"section-number\">2.4.4. </span>Multiple SimCenter", "<span class=\"section-number\">2.4.3. </span>Multiple PEER", "<span class=\"section-number\">2.4.2. </span>PEER NGA Records", "<span class=\"section-number\">2.4.7. </span>Physics Based Ground Motions", "Release Notes", "<span class=\"section-number\">2.4.1. </span>Stochastic Ground Motions", "<span class=\"section-number\">2.4.5. </span>Site Response Analysis", "<span class=\"section-number\">2.4.6. </span>User Specified Database", "<span class=\"section-number\">2.6. </span>EDP: Demand Parameters", "<span class=\"section-number\">2.8. </span>RES: Results", "<span class=\"section-number\">2. </span>User Interface", "User Inputs", "ConcreteBuildingModel", "CustomPy", "CustomPySimulation", "DakotaInputBayesianCalibration", "DakotaInputCalibration", "DakotaInputOptimization", "DakotaInputReliability", "DakotaInputSampling", "DakotaInputSensitivity", "EDP", "EDP_EarthquakeSelection", "ExampleWidget", "ExistingSimCenterEvents", "GaussianProcessInputWidget", "GlobalReliabilityWidget", "ImportSamplesWidget", "ImportanceSamplingInputWidget", "InputWidgetBIM", "InputWidgetExistingEvent", "InputWidgetOpenSeesAnalysis", "LatinHypercubeInputWidget", "LocalReliabilityWidget", "MDOF_BuildingModel", "MDOF_LU", "MonteCarloInputSimWidget", "MonteCarloInputWidget", "MultiFidelityMonteCarlo", "MultiFidelitySimWidget", "NoneEngine", "OpenSeesBuildingModel", "PCEInputWidget", "PLoMInputWidget", "PLoMSimuWidget", "SimCenterIntensityMeasureCombo", "SimCenterIntensityMeasureWidget", "SimCenterUQInputPLoM", "SimCenterUQInputSampling", "SimCenterUQInputSensitivity", "SimCenterUQInputSurrogate", "SimCenterUnitsCombo", "StandardEDP", "StandardEarthquakeEDP", "SteelBuildingModel", "SurrogateDoEInputWidget", "SurrogateEDP", "SurrogateGP", "SurrogateMFInputWidget", "SurrogateNoDoEInputWidget", "SurrogateSimulation", "UCSD_InputBayesianCalibration", "UCSD_InputHierarchicalBayesian", "UCSD_InputTMCMC", "UQpyStretch", "UQpySubsetSimulation", "UserDefinedEDP", "Earthquake Engineering with Uncertainty Quantification Application (EE-UQ)"], "terms": {"fmk": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 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280, 282, 283, 284, 286, 287, 288, 289, 290, 291, 293, 294, 295, 296, 297, 299, 300, 301, 302, 303, 304, 305, 306, 307, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 326, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 341, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 405, 414, 415, 417], "extens": [1, 13, 16, 29, 35, 101, 102, 105, 115, 124, 134, 222, 230, 243, 244, 245, 246, 258, 259, 261, 262, 279, 280, 282, 304, 305, 350, 351, 352, 355], "11": [1, 13, 16, 26, 29, 30, 32, 33, 54, 55, 56, 60, 63, 65, 71, 88, 92, 143, 159, 160, 161, 165, 168, 170, 176, 193, 197, 222, 223, 224, 225, 227, 228, 234, 237, 238, 241, 245, 253, 261, 264, 266, 278, 293, 417], "web": [1, 2, 13, 14, 16, 43, 46, 148, 151, 222, 223, 224, 225, 228, 237, 352], "scrab": [1, 2], "selenium": [1, 237], "gener": [2, 13, 14, 16, 23, 27, 28, 30, 34, 36, 39, 54, 55, 67, 86, 91, 105, 121, 122, 124, 159, 160, 172, 191, 196, 206, 207, 208, 209, 216, 222, 228, 230, 231, 233, 234, 237, 239, 240, 242, 243, 244, 245, 246, 248, 252, 255, 258, 259, 260, 261, 262, 265, 266, 279, 280, 281, 282, 286, 288, 289, 291, 293, 294, 295, 296, 297, 298, 299, 300, 301, 311, 312, 314, 316, 318, 320, 321, 324, 326, 328, 329, 330, 332, 333, 334, 335, 336, 339, 341, 343, 345, 346, 347, 349, 352, 353, 354, 355, 357, 358, 360, 373, 405, 413, 417], "c": [2, 13, 14, 16, 22, 26, 30, 32, 34, 35, 36, 44, 46, 75, 76, 77, 78, 79, 83, 87, 100, 149, 151, 180, 181, 182, 183, 184, 188, 192, 205, 220, 221, 230, 231, 232, 234, 238, 239, 241, 245, 247, 249, 253, 254, 256, 257, 259, 262, 265, 266, 278, 279, 280, 284, 285, 286, 295, 296, 305, 306, 327, 329, 335, 338, 339, 342, 353, 355, 356], "perform": [3, 5, 13, 14, 16, 22, 25, 26, 28, 30, 32, 35, 42, 64, 75, 76, 77, 78, 79, 101, 102, 109, 121, 122, 128, 147, 169, 180, 181, 182, 183, 184, 207, 208, 220, 222, 223, 224, 225, 227, 228, 230, 231, 233, 234, 237, 238, 242, 245, 251, 252, 253, 264, 265, 266, 272, 279, 280, 284, 287, 288, 291, 292, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 309, 314, 315, 318, 319, 320, 322, 324, 328, 331, 332, 333, 335, 339, 341, 343, 344, 345, 346, 347, 348, 352, 356, 357, 358, 417], "damag": [3, 13, 15, 16, 19, 20, 22, 26, 28, 29, 30, 32, 42, 44, 54, 55, 58, 62, 94, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 147, 149, 159, 160, 163, 167, 205, 206, 207, 208, 215, 216, 221, 227, 233, 237, 239, 240, 242, 244, 245, 246, 247, 248, 250, 254, 255, 257, 259, 261, 262, 263, 264, 272, 282, 284, 285, 286, 313, 314, 318, 319, 320, 321, 323], "loss": [3, 13, 14, 15, 16, 19, 22, 25, 26, 28, 29, 30, 32, 145, 215, 216, 221, 227, 233, 237, 238, 240, 242, 244, 245, 246, 247, 248, 250, 253, 255, 257, 259, 261, 262, 263, 264, 266, 272, 282, 284, 285, 286, 313, 314, 318, 319, 320, 321, 323, 339], "assess": [3, 13, 20, 25, 26, 28, 31, 222, 223, 224, 225, 227, 228, 230, 233, 237, 238, 240, 241, 245, 247, 251, 253, 255, 256, 259, 262, 264, 272, 279, 280, 284, 285, 288, 296, 301, 312, 314, 319, 321, 323, 326, 345, 352, 357, 417], "subject": [3, 14, 32, 38, 142, 143, 222, 224, 225, 232, 239, 243, 245, 252, 254, 258, 265, 266, 281, 288, 290, 291, 298, 299, 302, 320, 339, 417], "region": [3, 13, 15, 21, 25, 26, 30, 31, 32, 117, 136, 217, 222, 224, 225, 230, 233, 234, 237, 238, 239, 242, 243, 244, 245, 246, 247, 248, 251, 253, 254, 255, 258, 259, 260, 261, 262, 266, 279, 280, 283, 284, 285, 289, 297, 318, 319, 321, 323, 326, 330, 332, 339, 345, 353], "event": [3, 4, 5, 8, 11, 12, 13, 14, 15, 16, 20, 22, 23, 26, 28, 29, 30, 32, 33, 38, 39, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 216, 221, 222, 223, 224, 225, 227, 228, 229, 232, 233, 235, 237, 242, 244, 245, 252, 257, 259, 261, 262, 265, 266, 282, 284, 285, 287, 288, 291, 292, 297, 302, 311, 312, 314, 318, 320, 321, 324, 326, 332, 335, 337, 339, 350, 351, 352, 353, 354, 355, 356, 357, 358, 360, 417], "It": [3, 4, 5, 6, 7, 8, 12, 13, 14, 16, 19, 23, 29, 30, 32, 33, 35, 121, 122, 207, 208, 220, 222, 230, 231, 232, 233, 234, 238, 239, 242, 245, 253, 254, 257, 260, 264, 266, 286, 292, 299, 300, 304, 305, 306, 331, 332, 335, 342, 345, 348, 352, 353, 356, 357, 358], "take": [3, 6, 7, 8, 12, 13, 14, 16, 23, 30, 32, 220, 230, 233, 237, 238, 239, 249, 252, 253, 254, 257, 261, 262, 265, 288, 297, 299, 300, 301, 302, 304, 307, 312, 314, 326, 329, 334, 335, 344, 347, 358], "input": [3, 6, 7, 8, 10, 12, 13, 14, 16, 18, 20, 22, 24, 26, 27, 28, 35, 38, 39, 67, 172, 220, 222, 223, 224, 225, 228, 229, 232, 233, 238, 242, 245, 246, 251, 253, 257, 260, 261, 264, 266, 280, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 309, 312, 314, 315, 317, 318, 320, 321, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 342, 344, 346, 347, 349, 351, 352, 353, 355, 356, 358, 360, 373, 405], "properti": [3, 4, 7, 15, 19, 20, 33, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 230, 245, 247, 251, 252, 253, 265, 278, 287, 289, 291, 292, 311, 337, 339, 345], "determin": [3, 4, 13, 14, 16, 27, 30, 33, 53, 115, 134, 158, 222, 224, 225, 227, 230, 232, 238, 252, 253, 265, 280, 288, 309, 322, 335, 339, 345, 356, 358], "e": [3, 13, 14, 16, 23, 24, 29, 30, 32, 33, 34, 35, 38, 69, 75, 76, 77, 78, 79, 83, 87, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 135, 174, 180, 181, 182, 183, 184, 188, 192, 205, 206, 207, 208, 216, 222, 223, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 243, 244, 245, 249, 250, 252, 253, 254, 255, 256, 257, 258, 259, 262, 264, 265, 266, 278, 279, 280, 281, 287, 289, 290, 291, 292, 293, 295, 296, 298, 299, 300, 301, 304, 306, 307, 310, 314, 317, 318, 320, 326, 329, 330, 332, 338, 339, 341, 342, 343, 344, 345, 346, 347, 349, 350, 351, 352, 353, 354, 356, 359, 360, 417], "g": [3, 13, 14, 29, 30, 32, 33, 34, 35, 36, 38, 69, 75, 76, 77, 78, 79, 83, 87, 94, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 174, 180, 181, 182, 183, 184, 188, 192, 206, 207, 208, 217, 219, 222, 223, 224, 225, 228, 230, 232, 233, 234, 237, 238, 239, 240, 241, 242, 243, 244, 245, 249, 252, 253, 254, 255, 256, 257, 258, 259, 262, 265, 266, 279, 281, 286, 287, 289, 291, 292, 293, 295, 296, 299, 304, 306, 310, 314, 317, 326, 329, 332, 339, 342, 343, 344, 345, 350, 352, 354, 356, 359, 360, 417], "occup": [3, 33, 206, 207, 208, 209, 222, 237, 238, 239, 241, 247, 253, 254, 256, 262, 264, 279, 285, 286], "structur": [3, 8, 13, 14, 15, 18, 19, 20, 25, 27, 30, 32, 35, 39, 50, 51, 53, 58, 61, 68, 98, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 140, 155, 156, 158, 163, 166, 173, 203, 206, 210, 212, 213, 216, 222, 223, 224, 225, 227, 228, 229, 230, 231, 232, 233, 234, 238, 239, 240, 241, 244, 245, 247, 249, 250, 252, 253, 254, 255, 259, 261, 262, 265, 266, 279, 280, 282, 285, 286, 288, 291, 293, 294, 295, 297, 302, 310, 311, 314, 315, 317, 321, 326, 335, 342, 344, 345, 346, 352, 354, 357, 360, 417], "replac": [3, 20, 33, 35, 38, 58, 64, 100, 163, 169, 205, 222, 224, 225, 230, 237, 238, 241, 279, 280, 299, 300, 302, 314, 316, 333, 343, 344], "cost": [3, 20, 30, 32, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 53, 54, 55, 57, 59, 66, 67, 68, 69, 70, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 206, 207, 208, 209, 211, 212, 213, 222, 227, 230, 233, 237, 238, 241, 257, 280, 284, 314, 333], "number": [3, 11, 14, 16, 17, 19, 20, 30, 33, 38, 222, 224, 225, 227, 230, 231, 232, 233, 237, 238, 239, 240, 241, 242, 244, 245, 247, 249, 253, 254, 256, 257, 259, 260, 262, 264, 266, 278, 280, 282, 285, 291, 292, 293, 294, 295, 296, 298, 299, 300, 301, 304, 305, 307, 312, 313, 316, 317, 319, 323, 326, 328, 329, 330, 331, 332, 333, 334, 335, 337, 338, 339, 341, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 373, 405, 413, 414, 415], "stori": [3, 30, 32, 33, 38, 39, 41, 53, 58, 73, 104, 105, 106, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 122, 123, 124, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 146, 158, 163, 178, 208, 222, 230, 237, 238, 241, 244, 247, 253, 254, 256, 259, 262, 264, 278, 279, 280, 285, 286, 291, 292, 293, 294, 295, 298, 299, 301, 302, 309, 314, 318, 322, 337, 339, 354, 358], "specifi": [3, 4, 5, 6, 8, 11, 12, 13, 14, 16, 19, 20, 22, 23, 24, 26, 28, 30, 32, 33, 35, 54, 55, 58, 94, 159, 160, 163, 222, 223, 224, 225, 227, 228, 229, 232, 233, 238, 239, 240, 242, 245, 253, 254, 255, 257, 289, 291, 293, 294, 295, 297, 298, 299, 300, 301, 309, 311, 318, 320, 321, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 338, 339, 341, 343, 344, 345, 346, 347, 349, 350, 351, 352, 353, 354, 355, 356, 358, 359, 405, 415, 417], "bim": [3, 4, 6, 7, 8, 11, 12, 14, 15, 19, 22, 26, 28, 33, 216, 242, 253, 257], "well": [3, 22, 39, 109, 128, 206, 207, 208, 209, 230, 231, 233, 239, 241, 244, 245, 246, 247, 248, 256, 261, 262, 264, 266, 285, 298, 299, 300, 301, 312, 333, 334, 344, 345, 356], "respons": [3, 4, 8, 10, 12, 13, 14, 15, 16, 19, 20, 22, 23, 24, 26, 27, 30, 31, 32, 40, 44, 54, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 149, 159, 169, 186, 187, 188, 189, 190, 194, 195, 196, 206, 207, 208, 209, 222, 223, 224, 225, 227, 228, 231, 233, 235, 239, 244, 245, 246, 259, 260, 261, 262, 272, 280, 284, 288, 291, 295, 296, 297, 298, 299, 300, 301, 302, 307, 309, 311, 314, 321, 322, 326, 329, 330, 332, 333, 335, 339, 341, 342, 343, 344, 345, 347, 349, 352, 354, 357, 358, 359, 405, 417], "simul": [3, 4, 5, 6, 7, 8, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 26, 27, 28, 30, 32, 33, 38, 216, 217, 222, 223, 224, 225, 227, 228, 229, 230, 233, 234, 237, 239, 242, 244, 245, 246, 247, 251, 252, 254, 257, 259, 261, 264, 265, 272, 280, 282, 283, 284, 285, 288, 289, 291, 292, 295, 296, 298, 299, 300, 302, 305, 309, 310, 311, 312, 313, 314, 317, 318, 319, 320, 321, 322, 323, 324, 326, 328, 329, 330, 332, 333, 334, 335, 336, 339, 341, 343, 344, 348, 352, 353, 354, 356, 357, 358, 360, 400, 405, 415, 417], "output": [3, 4, 10, 13, 14, 15, 16, 18, 19, 22, 23, 24, 26, 28, 33, 34, 36, 38, 220, 222, 223, 224, 225, 228, 231, 233, 238, 242, 245, 246, 253, 257, 261, 279, 284, 288, 292, 297, 298, 299, 300, 301, 307, 309, 310, 311, 312, 314, 317, 319, 320, 322, 326, 329, 330, 331, 332, 333, 334, 336, 337, 339, 342, 343, 344, 346, 347, 354, 356, 357, 358, 360, 405], "record": [3, 11, 14, 19, 20, 26, 27, 30, 33, 38, 222, 224, 225, 229, 233, 234, 237, 238, 264, 266, 286, 291, 295, 296, 297, 298, 299, 300, 301, 302, 309, 312, 314, 318, 320, 339, 349, 350, 351, 354, 356, 357, 358], "edp": [3, 5, 12, 13, 14, 15, 16, 22, 23, 26, 27, 28, 30, 32, 38, 216, 222, 227, 242, 244, 250, 252, 257, 259, 265, 287, 291, 292, 295, 296, 297, 298, 299, 300, 301, 302, 309, 311, 312, 314, 318, 320, 322, 331, 335, 336, 339, 342, 344, 345, 354, 360, 361], "return": [3, 13, 14, 16, 18, 20, 23, 29, 30, 46, 62, 66, 151, 167, 171, 233, 237, 294, 300, 311, 328, 331, 335, 347, 352, 354], "probabl": [3, 5, 20, 30, 32, 101, 102, 222, 223, 224, 225, 227, 228, 229, 230, 233, 247, 252, 262, 265, 266, 280, 291, 296, 298, 300, 309, 314, 315, 316, 317, 322, 329, 332, 333, 342, 343, 344, 346, 347, 356, 359, 373, 413, 415], "dm": [3, 19, 22, 23, 26, 28, 30, 32, 33, 222, 223, 224, 225, 226, 227, 228, 242, 257], "csv": [3, 22, 24, 26, 28, 33, 222, 233, 237, 242, 257, 278, 279, 293, 294, 314, 318, 320, 339, 342, 344, 351, 352], "decis": [3, 20, 30, 32, 222, 244, 247, 252, 259, 265, 282, 287, 314, 346], "variabl": [3, 5, 13, 14, 15, 16, 20, 26, 30, 32, 35, 38, 83, 188, 216, 230, 231, 233, 234, 252, 265, 266, 286, 287, 288, 291, 294, 295, 296, 297, 298, 301, 302, 304, 307, 309, 312, 314, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 339, 343, 344, 346, 347, 350, 351, 352, 355, 358, 359, 360, 373, 405, 417], "estim": [3, 12, 14, 15, 19, 20, 30, 32, 121, 122, 207, 208, 222, 223, 224, 225, 227, 228, 231, 233, 234, 235, 237, 239, 242, 244, 245, 246, 247, 248, 250, 251, 252, 253, 254, 257, 259, 260, 261, 262, 263, 264, 265, 266, 272, 280, 284, 285, 287, 291, 292, 300, 301, 312, 314, 315, 317, 318, 321, 329, 330, 332, 333, 334, 339, 341, 343, 344, 345, 347, 356, 405], "dv": [3, 19, 22, 23, 26, 28, 30, 32, 33, 222, 227, 242, 257], "each": [3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 15, 16, 19, 20, 22, 23, 24, 26, 28, 30, 32, 33, 39, 46, 48, 49, 50, 51, 53, 69, 121, 122, 151, 153, 154, 155, 156, 158, 174, 207, 208, 220, 222, 227, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 245, 247, 252, 253, 254, 255, 256, 260, 264, 265, 266, 278, 279, 280, 283, 286, 287, 291, 292, 294, 295, 297, 298, 299, 301, 307, 312, 314, 316, 317, 326, 329, 330, 331, 332, 333, 334, 335, 336, 338, 339, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 359, 360, 405, 415], "save": [3, 7, 12, 23, 30, 222, 223, 224, 225, 228, 230, 233, 245, 252, 293, 294, 296, 297, 299, 300, 307, 311, 314, 315, 317, 323, 339, 342, 348, 352, 354, 357], "its": [3, 4, 7, 8, 11, 13, 14, 16, 24, 28, 33, 58, 116, 117, 121, 122, 135, 136, 163, 207, 208, 222, 230, 231, 232, 233, 238, 239, 240, 244, 245, 246, 247, 253, 254, 255, 259, 260, 261, 262, 264, 266, 282, 283, 285, 291, 292, 304, 307, 312, 326, 328, 334, 339, 344, 350, 351, 352, 355, 356, 360, 417], "correspond": [3, 4, 5, 7, 8, 11, 13, 14, 15, 26, 30, 32, 42, 147, 222, 227, 230, 231, 233, 238, 239, 241, 252, 253, 254, 256, 261, 264, 265, 266, 279, 285, 286, 287, 291, 292, 293, 294, 296, 298, 299, 301, 312, 328, 329, 330, 332, 333, 335, 338, 339, 341, 342, 343, 344, 345, 347, 351, 352, 353, 356, 360, 405], "work": [3, 4, 7, 8, 12, 13, 14, 16, 22, 26, 29, 33, 38, 75, 76, 77, 78, 79, 94, 115, 134, 180, 181, 182, 183, 184, 218, 219, 222, 230, 237, 238, 241, 242, 257, 284, 299, 304, 305, 306, 307, 313, 314, 316, 317, 323, 326, 328, 332, 335, 337, 339, 348, 353], "directori": [3, 4, 7, 8, 12, 13, 16, 19, 22, 26, 30, 32, 33, 34, 35, 36, 38, 233, 242, 257, 291, 295, 296, 298, 299, 300, 304, 305, 306, 307, 317, 326, 327, 328, 339, 342, 344, 345, 346, 348, 350, 351, 353], "follow": [3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 141, 142, 143, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 206, 207, 208, 209, 211, 212, 213, 215, 216, 220, 221, 222, 225, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 252, 253, 254, 255, 257, 259, 261, 264, 265, 266, 280, 282, 285, 287, 291, 292, 295, 297, 299, 300, 301, 302, 304, 305, 307, 309, 312, 313, 314, 315, 316, 319, 320, 322, 323, 326, 328, 329, 330, 332, 335, 337, 338, 339, 341, 343, 344, 345, 347, 348, 349, 352, 354, 356, 357, 358, 360, 361, 373], "vari": [3, 4, 5, 6, 7, 8, 11, 12, 13, 16, 25, 33, 39, 54, 62, 97, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 136, 159, 167, 202, 206, 230, 232, 234, 238, 239, 244, 254, 259, 264, 266, 280, 292, 322, 347, 356], "softwar": [3, 5, 29, 35, 38, 220, 221, 222, 223, 224, 225, 228, 230, 237, 280, 283, 288, 303, 304, 305, 326, 330, 338, 348, 360, 417], "packag": [3, 5, 14, 35, 86, 191, 230, 257, 304, 305, 307, 314, 317, 327, 328, 342, 345, 351, 405], "main": [3, 4, 5, 6, 7, 8, 11, 12, 14, 29, 30, 35, 87, 100, 192, 205, 230, 239, 241, 245, 254, 280, 291, 299, 301, 326, 334, 339, 344, 345, 360], "html": [3, 4, 5, 6, 7, 8, 11, 12, 237], "demand": [4, 14, 15, 38, 53, 54, 55, 58, 64, 73, 81, 82, 83, 84, 85, 89, 90, 91, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 122, 158, 159, 160, 163, 169, 178, 186, 187, 188, 189, 190, 194, 195, 196, 206, 208, 216, 222, 233, 247, 252, 265, 279, 285, 286, 287, 295, 296, 298, 301, 312, 314, 318, 319, 328, 344, 354, 360], "paramet": [4, 6, 12, 13, 14, 15, 16, 19, 20, 30, 32, 58, 73, 100, 163, 178, 205, 216, 222, 223, 224, 225, 227, 228, 230, 238, 252, 253, 265, 266, 286, 287, 291, 292, 294, 295, 298, 299, 300, 301, 312, 314, 315, 317, 318, 320, 328, 329, 330, 332, 333, 334, 336, 338, 339, 342, 343, 344, 345, 346, 352, 354, 355, 356, 360, 373, 405, 414], "expect": [4, 15, 39, 41, 83, 87, 114, 133, 146, 188, 192, 230, 234, 238, 240, 241, 242, 251, 253, 255, 256, 257, 264, 266, 279, 299, 301, 342, 344, 345, 347, 405], "from": [4, 5, 7, 13, 14, 15, 16, 18, 20, 23, 26, 28, 29, 30, 32, 33, 34, 36, 38, 39, 41, 47, 51, 53, 64, 70, 97, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 135, 146, 152, 156, 158, 169, 175, 202, 205, 206, 220, 222, 223, 224, 225, 227, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 259, 260, 261, 262, 264, 265, 266, 278, 279, 280, 282, 283, 285, 287, 288, 289, 291, 292, 294, 295, 296, 297, 298, 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330, 358], "locat": [4, 7, 8, 19, 20, 22, 27, 30, 32, 33, 35, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 222, 229, 230, 233, 234, 238, 239, 240, 241, 242, 245, 252, 253, 254, 260, 265, 266, 278, 279, 280, 284, 285, 287, 288, 289, 294, 296, 297, 300, 301, 306, 307, 311, 312, 314, 318, 320, 326, 328, 331, 332, 333, 337, 338, 339, 345, 352, 353, 356, 360], "direct": [4, 19, 20, 22, 23, 29, 30, 33, 86, 101, 102, 112, 114, 131, 133, 191, 221, 222, 227, 230, 234, 238, 239, 242, 253, 257, 261, 283, 286, 291, 292, 294, 298, 299, 300, 301, 314, 328, 339, 345, 346, 351, 352, 355, 356, 405, 417], "dof": [4, 30, 291, 339, 351, 358], "an": [4, 7, 13, 14, 15, 16, 18, 19, 20, 22, 23, 24, 26, 27, 29, 30, 32, 33, 34, 35, 36, 38, 39, 51, 53, 54, 55, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 123, 156, 158, 159, 160, 206, 220, 222, 223, 224, 225, 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297, 299, 300, 301, 304, 309, 315, 322, 333, 336, 338, 339, 341, 343, 344, 345, 347, 352, 355, 356, 357, 358, 417], "ar": [4, 5, 6, 11, 13, 14, 15, 16, 18, 19, 20, 22, 23, 24, 26, 27, 28, 29, 30, 32, 33, 34, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 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253, 261, 264, 283, 284, 285, 288, 289, 291, 292, 295, 302, 304, 306, 307, 314, 315, 316, 321, 324, 325, 328, 329, 333, 334, 335, 339, 341, 342, 343, 344, 345, 346, 347, 348, 352, 353, 355, 356, 357, 358, 359, 360, 405, 417], "command": [5, 13, 16, 22, 23, 24, 26, 28, 30, 32, 33, 34, 35, 36, 38, 222, 223, 224, 225, 228, 291, 299, 300, 301, 304, 305, 307, 326, 335, 339, 345, 358], "written": [5, 13, 14, 16, 26, 29, 34, 36, 231, 233, 241, 246, 261, 328, 339, 343, 344, 345, 358], "driver": [5, 26, 326, 328, 348], "which": [5, 13, 14, 15, 16, 17, 19, 20, 22, 23, 24, 26, 27, 29, 30, 32, 33, 35, 51, 53, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 127, 131, 156, 158, 206, 220, 222, 223, 224, 225, 227, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 247, 251, 252, 253, 254, 255, 257, 259, 262, 264, 265, 266, 278, 280, 282, 284, 285, 287, 288, 291, 292, 293, 294, 296, 297, 298, 299, 300, 301, 303, 304, 305, 306, 307, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 338, 339, 342, 344, 346, 347, 348, 350, 351, 352, 353, 355, 356, 358, 360, 415], "call": [5, 15, 22, 23, 26, 33, 34, 35, 36, 38, 39, 230, 231, 239, 241, 245, 254, 266, 296, 298, 311, 330, 331, 332, 344, 347, 356], "backend": [5, 13, 16, 22, 23, 24, 26, 28, 29, 30, 31, 32, 39, 233, 247, 262, 285, 288, 291, 292, 293, 294, 295, 296, 297, 298, 303, 304, 307, 314, 317, 321, 326, 339, 345, 355, 356, 360], "execut": [5, 12, 13, 15, 16, 19, 23, 24, 26, 28, 30, 32, 33, 35, 235, 238, 242, 244, 245, 246, 248, 253, 254, 257, 259, 261, 293, 294, 299, 304, 305, 306, 307, 312, 326, 327, 332, 335, 345, 347, 348, 356, 405], "r2d": [5, 13, 14, 16, 27, 229, 233, 234, 246, 261, 320, 321, 323], "first": [5, 13, 14, 16, 23, 24, 26, 27, 28, 30, 35, 38, 58, 73, 163, 178, 222, 223, 224, 225, 227, 228, 229, 230, 232, 233, 234, 237, 238, 241, 245, 252, 253, 257, 260, 264, 265, 266, 286, 291, 293, 295, 296, 298, 299, 300, 301, 304, 306, 307, 314, 315, 328, 329, 330, 332, 338, 342, 344, 345, 347, 350, 351, 352, 356, 359], "popul": [5, 12, 15, 26, 33, 222, 227, 232, 239, 242, 247, 252, 257, 262, 265, 278, 280, 284, 285, 297, 298, 300, 301, 321, 336, 339, 352], "valu": [5, 10, 13, 16, 19, 20, 29, 30, 32, 33, 35, 38, 39, 54, 55, 64, 67, 81, 82, 83, 84, 85, 89, 90, 91, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 159, 160, 169, 172, 186, 187, 188, 189, 190, 194, 195, 196, 206, 222, 227, 229, 230, 231, 232, 234, 237, 238, 239, 240, 241, 245, 251, 252, 253, 254, 255, 264, 265, 266, 280, 287, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 305, 315, 317, 328, 329, 330, 331, 332, 333, 335, 338, 339, 341, 342, 343, 344, 345, 346, 347, 350, 351, 352, 354, 355, 356, 358, 405], "distribut": [5, 14, 20, 29, 30, 32, 33, 38, 80, 86, 92, 108, 114, 127, 133, 185, 191, 197, 221, 222, 223, 224, 225, 227, 228, 229, 230, 233, 234, 238, 241, 247, 251, 252, 253, 256, 257, 262, 264, 265, 266, 279, 280, 285, 286, 287, 288, 291, 292, 294, 295, 298, 301, 315, 319, 324, 328, 329, 330, 331, 332, 336, 339, 343, 344, 345, 346, 347, 350, 351, 356, 373, 413], "sim": [5, 12, 15, 26, 38, 75, 76, 77, 78, 79, 83, 87, 180, 181, 182, 183, 184, 188, 192, 216, 222, 230, 231, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 311, 335, 336, 341, 343, 344, 358, 360], "befor": [5, 13, 16, 97, 117, 136, 202, 230, 231, 239, 242, 247, 248, 252, 262, 264, 265, 266, 285, 290, 291, 292, 293, 294, 304, 307, 326, 338, 339, 352, 353, 357, 358], "If": [5, 18, 19, 20, 22, 23, 24, 33, 34, 35, 36, 38, 230, 232, 233, 234, 239, 240, 243, 246, 255, 257, 258, 261, 281, 288, 289, 290, 291, 292, 295, 299, 300, 304, 305, 306, 307, 310, 313, 314, 316, 323, 326, 329, 333, 335, 338, 339, 344, 345, 347, 350, 351, 352, 353, 355, 356, 358, 359, 360, 405], "directli": [5, 14, 23, 32, 33, 68, 173, 231, 233, 234, 245, 250, 261, 262, 266, 279, 294, 315, 342, 343, 344, 345, 346, 351, 352, 356], "without": [5, 29, 47, 51, 53, 64, 83, 104, 107, 109, 110, 123, 126, 128, 129, 152, 156, 158, 169, 188, 221, 230, 254, 304, 314, 317, 327, 331, 332, 334, 342, 343, 344, 347, 352], "creat": [6, 7, 13, 14, 15, 16, 22, 23, 26, 27, 33, 34, 35, 36, 38, 44, 149, 222, 223, 224, 225, 227, 228, 232, 237, 238, 239, 243, 244, 245, 246, 253, 258, 261, 262, 281, 288, 290, 291, 293, 296, 298, 299, 304, 305, 306, 309, 310, 311, 312, 321, 322, 324, 326, 328, 332, 334, 335, 336, 339, 344, 351, 354, 356, 358, 360], "rang": [6, 13, 16, 30, 38, 222, 227, 230, 231, 237, 245, 259, 260, 299, 300, 329, 338, 344, 345, 352, 353, 356, 357, 358], "asset": [6, 15, 16, 19, 20, 22, 23, 24, 26, 28, 30, 32, 33, 222, 224, 225, 227, 241, 242, 244, 245, 246, 247, 257, 259, 261, 262, 264, 266, 272, 280, 284, 285, 287, 314, 318, 319, 320, 321, 326, 335, 339], "id": [6, 19, 22, 23, 26, 30, 33, 34, 35, 36, 237, 238, 242, 253, 257, 264, 266, 278, 328, 339], "select": [6, 7, 11, 13, 14, 16, 19, 23, 27, 30, 32, 33, 34, 35, 36, 38, 222, 223, 224, 225, 228, 229, 230, 231, 233, 240, 242, 246, 247, 248, 251, 252, 253, 255, 257, 261, 264, 265, 287, 288, 289, 291, 292, 295, 296, 298, 301, 302, 304, 305, 306, 307, 309, 311, 314, 316, 318, 320, 321, 322, 324, 326, 328, 332, 333, 335, 336, 338, 339, 341, 343, 344, 345, 346, 347, 348, 350, 351, 354, 355, 356, 357, 358, 359, 360, 405], "express": [6, 29, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 218, 219, 221, 237, 244, 245, 249, 282, 284, 321, 333, 335, 339, 356], "min": [6, 22, 26, 30, 32, 33, 233, 241, 266, 299, 301, 339, 356], "max": [6, 22, 26, 30, 32, 33, 237, 241, 299, 301, 331, 339, 341, 343, 356, 358, 405, 415], "configur": [6, 8, 11, 22, 23, 24, 26, 28, 30, 32, 33, 34, 35, 36, 233, 239, 241, 242, 254, 256, 257, 279, 286, 292, 293, 294, 295, 299, 314, 315, 342, 354, 360], "specif": [6, 13, 16, 20, 23, 24, 27, 29, 30, 33, 34, 35, 36, 38, 100, 205, 222, 224, 225, 230, 233, 234, 238, 239, 240, 241, 242, 243, 245, 246, 247, 248, 252, 254, 255, 257, 258, 261, 262, 264, 265, 266, 279, 285, 287, 292, 293, 295, 297, 299, 304, 307, 311, 314, 317, 319, 321, 324, 326, 330, 331, 334, 337, 338, 339, 341, 343, 344, 345, 356, 405, 414, 417], "sourc": [6, 13, 16, 29, 30, 32, 33, 34, 35, 36, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 233, 238, 239, 240, 244, 246, 247, 248, 252, 253, 254, 255, 259, 261, 265, 266, 280, 283, 285, 287, 288, 289, 293, 294, 295, 306, 314, 318, 320, 321, 328, 334, 339, 342, 344, 345, 417], "pars": [6, 8, 13, 14, 16, 26, 28, 100, 205, 237, 238, 245, 249, 253, 257, 278, 289, 351], "result": [6, 11, 12, 13, 14, 16, 18, 20, 22, 23, 24, 26, 28, 30, 32, 39, 106, 112, 116, 125, 131, 135, 222, 223, 224, 225, 227, 228, 230, 231, 232, 233, 234, 238, 244, 245, 246, 247, 248, 249, 252, 253, 259, 261, 262, 265, 272, 279, 280, 282, 283, 285, 286, 288, 291, 292, 295, 301, 304, 305, 306, 307, 311, 312, 313, 314, 317, 319, 321, 326, 328, 329, 330, 331, 332, 333, 334, 339, 341, 343, 345, 346, 347, 352, 353, 354, 357, 358, 360], "folder": [6, 11, 13, 16, 19, 20, 22, 23, 24, 26, 30, 32, 34, 35, 36, 38, 229, 242, 257, 291, 295, 298, 299, 304, 305, 306, 307, 326, 339, 345, 350, 351, 360], "process": [6, 7, 13, 14, 16, 20, 26, 28, 35, 38, 121, 206, 207, 208, 209, 220, 222, 223, 224, 225, 228, 231, 233, 234, 235, 237, 238, 239, 240, 242, 245, 246, 247, 248, 251, 253, 255, 257, 262, 264, 279, 283, 285, 287, 288, 292, 293, 301, 302, 304, 308, 309, 311, 312, 314, 315, 317, 321, 322, 324, 326, 330, 331, 332, 336, 339, 340, 341, 343, 344, 346, 347, 348, 352, 353, 354, 356, 358, 360, 405], "site": [7, 8, 11, 14, 15, 19, 26, 28, 30, 31, 32, 39, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 126, 206, 222, 224, 225, 229, 233, 234, 238, 239, 240, 241, 245, 252, 254, 260, 264, 265, 266, 283, 285, 287, 288, 289, 293, 294, 295, 297, 300, 302, 309, 311, 314, 318, 320, 321, 326, 339, 345, 349, 352, 354, 355, 417], "associ": [7, 14, 19, 28, 67, 172, 223, 225, 228, 230, 237, 238, 239, 241, 245, 246, 247, 253, 254, 256, 260, 261, 262, 266, 285, 328, 330, 331, 334, 338, 339, 344, 358], "one": [7, 13, 14, 15, 16, 19, 20, 23, 24, 28, 30, 32, 33, 39, 42, 43, 44, 50, 51, 53, 67, 97, 108, 112, 114, 116, 127, 131, 133, 135, 147, 148, 149, 155, 156, 158, 172, 202, 220, 222, 229, 230, 232, 233, 234, 238, 239, 253, 254, 257, 262, 279, 286, 287, 291, 292, 293, 294, 296, 297, 298, 299, 300, 301, 304, 307, 314, 326, 329, 330, 331, 332, 333, 335, 338, 339, 344, 345, 347, 350, 351, 352, 356, 357, 359, 360, 405], "contain": [7, 10, 13, 15, 18, 19, 22, 23, 29, 34, 35, 36, 109, 128, 220, 225, 229, 234, 237, 238, 240, 245, 246, 253, 255, 261, 278, 291, 294, 295, 298, 299, 304, 305, 307, 326, 328, 329, 330, 336, 337, 339, 344, 345, 346, 347, 350, 351, 356, 358, 373, 405, 413], "intens": [7, 15, 19, 27, 30, 32, 33, 216, 222, 224, 225, 229, 233, 235, 241, 245, 247, 251, 252, 256, 262, 264, 265, 280, 283, 285, 286, 289, 296, 297, 299, 300, 311, 318, 320, 321, 342, 345, 352, 354, 405, 417], "measur": [7, 15, 19, 27, 30, 32, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 216, 222, 223, 224, 225, 228, 229, 231, 233, 234, 235, 238, 239, 241, 245, 247, 251, 252, 253, 254, 256, 260, 262, 264, 265, 266, 289, 291, 296, 297, 299, 300, 311, 315, 318, 320, 321, 322, 323, 329, 330, 334, 342, 344, 345, 346, 347, 352, 354, 356, 405], "obtain": [7, 13, 14, 16, 30, 35, 38, 222, 223, 224, 225, 228, 229, 230, 231, 232, 234, 237, 238, 242, 253, 257, 266, 291, 292, 298, 300, 301, 302, 312, 317, 332, 335, 339, 343, 344, 345, 346, 347, 352, 356, 357, 358, 360], "name": [7, 10, 11, 13, 14, 16, 19, 20, 23, 25, 26, 30, 32, 33, 35, 234, 237, 238, 239, 242, 253, 254, 257, 291, 292, 298, 299, 300, 301, 302, 304, 305, 307, 311, 314, 328, 330, 331, 332, 336, 337, 338, 342, 345, 346, 347, 350, 351, 352, 354, 356, 358], "format": [7, 14, 18, 20, 22, 23, 24, 29, 30, 33, 222, 227, 229, 233, 237, 238, 239, 245, 253, 254, 279, 283, 292, 296, 300, 304, 309, 312, 314, 317, 318, 320, 321, 328, 342, 345, 350, 352, 354, 356, 357, 405], "consolid": 8, "analysi": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 223, 226, 227, 228, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 295, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 333, 335, 336, 337, 338, 339, 340, 341, 342, 343, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417], "repres": [8, 13, 20, 29, 54, 55, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 159, 160, 169, 186, 187, 188, 189, 190, 194, 195, 196, 206, 209, 222, 224, 225, 229, 230, 231, 232, 233, 238, 240, 241, 247, 253, 255, 256, 266, 280, 285, 288, 289, 295, 298, 299, 300, 301, 302, 347, 349, 350, 351, 352, 356, 357, 360], "finit": [8, 12, 14, 16, 35, 216, 231, 251, 282, 283, 285, 286, 298, 301, 342, 354, 356, 358, 360], "element": [8, 12, 13, 14, 16, 17, 30, 35, 109, 110, 111, 114, 117, 121, 128, 129, 130, 133, 136, 207, 216, 230, 232, 233, 282, 286, 291, 292, 298, 301, 338, 339, 347, 354, 356, 358, 360], "bknd": 10, "0039": 10, "No": [10, 23, 26, 50, 53, 70, 83, 87, 101, 102, 155, 158, 175, 188, 192, 218, 219, 229, 238, 239, 254, 266, 292, 299, 326, 330, 331, 344, 352, 356, 417], "descript": [10, 23, 29, 46, 101, 102, 151, 222, 223, 224, 225, 227, 228, 229, 239, 242, 244, 245, 246, 247, 248, 254, 257, 259, 261, 262, 266, 272, 279, 280, 284, 285, 286, 288, 290, 314, 326, 352, 360, 373], "cli": [10, 23], "inputfil": 10, "lt": 10, "filenam": [10, 314, 358], "r": [10, 38, 42, 147, 230, 233, 238, 239, 245, 247, 254, 262, 291, 294, 295, 296, 301, 330, 334, 342, 345, 356, 358, 417], "gt": 10, "outfil": [10, 358, 405], "w": [10, 13, 14, 16, 22, 27, 30, 32, 33, 38, 41, 42, 43, 44, 62, 66, 77, 146, 147, 148, 149, 167, 171, 182, 219, 230, 231, 233, 234, 237, 238, 239, 245, 254, 278, 280, 284, 291, 334, 343, 344, 356, 358, 417], "tabfil": 10, "tab": [10, 35, 38, 41, 146, 229, 238, 253, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 307, 311, 314, 317, 326, 329, 330, 335, 336, 337, 338, 339, 341, 342, 343, 344, 347, 348, 350, 351, 352, 355, 357, 358, 359, 405], "0041": 10, "simcenteruq": [10, 222, 223, 224, 225, 228, 235, 296, 301, 309, 315, 317, 322, 342, 343, 344, 348, 354, 417], "under": [11, 14, 21, 32, 33, 35, 41, 101, 102, 146, 218, 219, 221, 222, 223, 224, 225, 227, 228, 229, 231, 233, 234, 239, 242, 244, 245, 247, 252, 257, 259, 260, 261, 262, 265, 266, 284, 285, 286, 287, 288, 289, 292, 296, 298, 299, 300, 301, 302, 304, 305, 306, 307, 312, 314, 319, 326, 330, 336, 339, 342, 345, 352, 356, 357, 417], "For": [11, 13, 14, 16, 18, 19, 22, 23, 24, 25, 26, 27, 29, 30, 32, 33, 34, 35, 36, 58, 109, 128, 163, 220, 222, 229, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 245, 247, 252, 253, 255, 256, 257, 258, 262, 264, 265, 266, 278, 280, 282, 285, 287, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 314, 315, 319, 326, 329, 330, 332, 333, 334, 335, 336, 338, 339, 342, 343, 345, 346, 347, 348, 350, 351, 352, 355, 356, 358, 360], "set": [11, 13, 14, 15, 16, 20, 22, 23, 26, 28, 30, 32, 33, 35, 38, 39, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 220, 222, 223, 225, 227, 228, 229, 231, 232, 233, 237, 238, 241, 242, 246, 253, 257, 261, 264, 266, 279, 283, 288, 291, 292, 293, 294, 296, 297, 301, 304, 305, 306, 307, 312, 314, 317, 326, 328, 330, 331, 332, 333, 334, 335, 336, 338, 339, 342, 344, 345, 346, 347, 350, 351, 352, 356, 357, 358], "candid": [11, 231, 233, 314], "must": [11, 18, 19, 25, 27, 29, 109, 128, 221, 227, 229, 232, 238, 239, 241, 254, 291, 298, 304, 305, 307, 326, 328, 329, 330, 331, 333, 335, 336, 338, 339, 347, 350, 351, 352, 356, 357, 358], "input_data": [11, 19, 22, 23, 26, 30, 32, 33], "onc": [11, 13, 14, 16, 23, 30, 33, 35, 58, 73, 163, 178, 230, 233, 238, 240, 242, 253, 255, 257, 293, 294, 297, 301, 304, 305, 307, 328, 331, 336, 338, 339, 342, 345, 348, 352, 353, 356, 357], "chosen": [11, 13, 14, 16, 19, 25, 26, 230, 231, 232, 291, 292, 295, 301, 326, 330, 331, 335, 356], "algorithm": [11, 13, 30, 32, 222, 223, 224, 225, 228, 231, 233, 235, 238, 253, 283, 299, 301, 315, 323, 324, 329, 330, 331, 332, 335, 339, 342, 343, 345, 346, 347, 348, 352, 356, 357, 414, 415], "method": [11, 13, 14, 16, 23, 24, 26, 29, 30, 32, 33, 35, 38, 227, 233, 234, 235, 238, 239, 242, 244, 245, 252, 253, 257, 259, 262, 265, 282, 284, 285, 286, 287, 288, 291, 292, 293, 294, 296, 298, 299, 300, 301, 302, 310, 311, 312, 313, 314, 315, 316, 317, 318, 322, 324, 328, 329, 330, 331, 333, 334, 339, 340, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 354, 356, 357, 360, 400, 405, 414, 415, 417], "make": [11, 13, 14, 15, 23, 29, 33, 34, 35, 36, 222, 227, 230, 231, 232, 238, 239, 240, 245, 252, 254, 255, 265, 266, 280, 288, 299, 300, 301, 304, 305, 307, 326, 328, 345, 356], "script": [12, 13, 14, 16, 19, 23, 24, 26, 27, 33, 222, 224, 225, 227, 232, 233, 238, 239, 242, 246, 248, 253, 254, 257, 261, 291, 295, 299, 301, 304, 307, 309, 310, 314, 317, 320, 326, 330, 331, 335, 339, 342, 344, 345, 347, 356, 358, 373, 413], "These": [12, 14, 15, 16, 24, 33, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 123, 125, 126, 127, 128, 129, 130, 131, 132, 133, 136, 137, 138, 206, 223, 225, 228, 229, 231, 232, 233, 234, 238, 239, 240, 241, 245, 246, 248, 252, 253, 254, 255, 256, 259, 261, 262, 265, 278, 280, 283, 286, 287, 288, 289, 292, 294, 316, 323, 326, 328, 332, 339, 347, 356, 358, 360], "mai": [12, 13, 14, 16, 19, 20, 22, 23, 25, 33, 34, 35, 36, 42, 44, 51, 53, 58, 94, 104, 106, 112, 115, 116, 117, 118, 119, 123, 125, 131, 134, 135, 136, 137, 138, 147, 149, 156, 158, 163, 220, 230, 233, 234, 237, 238, 239, 240, 244, 246, 248, 253, 254, 255, 257, 259, 261, 265, 266, 279, 280, 291, 293, 294, 297, 299, 300, 301, 304, 305, 306, 307, 310, 313, 314, 316, 317, 319, 321, 326, 327, 332, 333, 334, 336, 338, 339, 341, 343, 344, 345, 352, 357, 359, 405], "includ": [12, 13, 14, 19, 27, 29, 30, 32, 35, 38, 41, 42, 43, 51, 53, 58, 69, 75, 76, 77, 78, 79, 87, 94, 101, 102, 117, 119, 121, 122, 136, 138, 141, 146, 147, 148, 156, 158, 163, 174, 180, 181, 182, 183, 184, 192, 206, 207, 208, 209, 221, 222, 223, 224, 225, 228, 229, 231, 232, 233, 234, 238, 239, 240, 241, 242, 244, 245, 246, 247, 252, 253, 254, 255, 257, 259, 261, 262, 264, 265, 266, 278, 279, 280, 285, 287, 292, 298, 304, 305, 306, 311, 313, 314, 317, 319, 320, 321, 323, 324, 333, 335, 337, 339, 342, 343, 347, 351, 352, 354, 356, 417], "integr": [12, 30, 35, 222, 230, 244, 259, 301, 312, 313, 314, 319, 321, 323, 324, 332, 335, 339, 360], "scheme": [12, 332, 333, 335], "converg": [12, 30, 222, 224, 225, 231, 232, 238, 253, 330, 331, 332, 333, 335, 339], "toler": [12, 30, 330, 331, 335, 342, 345, 405], "size": [12, 30, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 57, 58, 59, 62, 64, 66, 67, 68, 69, 70, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 142, 143, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 206, 207, 208, 209, 211, 212, 213, 238, 239, 251, 253, 266, 292, 300, 301, 331, 339, 342, 343, 344, 345, 346, 347, 356, 373, 413], "etc": [12, 13, 14, 16, 94, 229, 230, 237, 238, 241, 243, 253, 258, 291, 301, 339, 350], "numer": [12, 14, 30, 108, 127, 227, 230, 231, 232, 238, 245, 252, 265, 288, 324, 329, 335, 339, 342, 344, 346, 347, 356, 417], "after": [12, 20, 24, 28, 30, 35, 38, 106, 117, 125, 136, 222, 231, 233, 234, 238, 239, 242, 253, 257, 262, 264, 266, 291, 292, 299, 300, 301, 304, 306, 307, 315, 317, 338, 341, 343, 346, 348, 350, 351, 352, 356, 357, 358, 360], "complet": [12, 13, 16, 18, 20, 23, 26, 28, 30, 58, 101, 102, 115, 134, 163, 230, 233, 242, 244, 257, 279, 280, 282, 284, 285, 291, 295, 297, 299, 300, 301, 307, 314, 326, 341, 342, 343, 345, 347, 355, 360], "procedur": [12, 13, 33, 220, 230, 238, 253, 292, 293, 297, 299, 300, 307, 332, 339, 345, 356], "scientif": [13, 14, 220, 222, 223, 224, 225, 228, 230, 283, 329, 360], "system": [13, 14, 15, 16, 23, 26, 30, 33, 34, 35, 36, 39, 68, 86, 92, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 173, 191, 197, 206, 207, 208, 209, 220, 222, 223, 224, 225, 228, 230, 232, 233, 238, 245, 253, 279, 283, 286, 293, 303, 304, 305, 307, 308, 309, 320, 322, 332, 334, 335, 339, 344, 354, 405, 415, 417], "sequenc": [13, 14, 16, 17, 26, 220, 244, 259, 282, 291, 326, 333, 341, 343], "task": [13, 26, 220, 230, 238, 240, 242, 253, 257, 305, 318, 328, 345], "special": [13, 29, 42, 52, 69, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 100, 147, 157, 174, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 205, 221, 222, 247, 261, 292, 302, 337, 350, 356], "natur": [13, 14, 16, 21, 39, 114, 133, 217, 222, 230, 232, 233, 237, 245, 252, 258, 265, 287, 288, 299, 301, 312, 314, 338, 339, 341, 343, 344, 349], "hazard": [13, 15, 16, 19, 21, 25, 27, 32, 33, 216, 217, 222, 224, 225, 227, 230, 237, 238, 239, 240, 241, 243, 244, 246, 248, 253, 254, 256, 257, 258, 259, 261, 266, 272, 279, 282, 284, 288, 294, 300, 302, 311, 312, 314, 318, 319, 320, 321, 323, 339, 352, 354, 357], "nhe": [13, 14, 16, 222, 228], "problem": [13, 24, 29, 38, 220, 230, 234, 291, 293, 295, 296, 301, 302, 304, 307, 317, 326, 330, 331, 333, 335, 338, 345, 347, 348, 356], "In": [13, 14, 16, 18, 24, 25, 26, 29, 30, 32, 33, 34, 35, 36, 38, 83, 94, 101, 102, 105, 106, 112, 115, 117, 124, 125, 131, 134, 136, 188, 222, 223, 224, 225, 228, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 245, 246, 247, 248, 253, 254, 255, 260, 262, 264, 266, 280, 285, 288, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 311, 316, 328, 331, 332, 333, 334, 335, 336, 338, 339, 341, 342, 343, 344, 346, 347, 352, 355, 356, 357], "contrast": [13, 233, 234, 245, 253, 266, 280, 284, 285, 314], "more": [13, 16, 19, 22, 23, 24, 30, 32, 33, 35, 70, 104, 105, 106, 108, 109, 111, 112, 113, 115, 116, 117, 118, 123, 124, 125, 127, 128, 130, 131, 132, 134, 135, 136, 137, 141, 175, 222, 224, 225, 229, 230, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 250, 252, 253, 254, 255, 256, 257, 259, 261, 262, 263, 265, 266, 278, 279, 280, 282, 283, 285, 286, 292, 296, 299, 301, 304, 311, 314, 317, 321, 326, 328, 330, 331, 332, 333, 334, 338, 341, 342, 343, 344, 345, 346, 347, 352, 353, 355, 356, 357, 359, 360, 405], "purpos": [13, 29, 33, 39, 221, 223, 225, 228, 232, 238, 239, 254, 261, 280, 293, 295, 300, 301, 313, 316, 323, 345, 356, 358], "taverna": 13, "kepler": 13, "pegasu": 13, "featur": [13, 29, 35, 118, 137, 222, 223, 225, 228, 238, 239, 240, 241, 243, 246, 252, 254, 255, 256, 257, 258, 261, 262, 265, 266, 280, 288, 289, 295, 301, 304, 309, 311, 313, 314, 315, 316, 318, 319, 320, 321, 322, 323, 324, 343, 345, 347, 354, 356, 417], "access": [13, 14, 16, 23, 71, 97, 121, 176, 202, 207, 222, 237, 244, 247, 253, 254, 257, 261, 262, 264, 266, 284, 285, 313, 314, 319, 328, 329, 348], "high": [13, 14, 16, 22, 44, 46, 50, 53, 66, 75, 76, 77, 78, 79, 83, 87, 92, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 137, 138, 149, 151, 155, 158, 171, 180, 181, 182, 183, 184, 188, 192, 197, 206, 207, 208, 209, 222, 223, 224, 225, 227, 228, 231, 235, 237, 238, 244, 245, 247, 259, 262, 266, 280, 282, 284, 285, 290, 298, 310, 315, 317, 319, 320, 322, 323, 324, 332, 335, 341, 343, 345, 346, 417], "resourc": [13, 14, 16, 22, 28, 222, 223, 224, 225, 228, 231, 235, 242, 245, 247, 248, 257, 266, 278, 284, 298, 345], "avail": [13, 14, 16, 22, 25, 26, 27, 33, 35, 38, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 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295, 304, 311, 313, 314, 321, 322, 342, 343, 345, 352, 354, 357], "parallel": [13, 28, 35, 117, 136, 238, 242, 253, 257, 286, 295, 299, 317, 331, 334, 345, 348, 405], "non": [13, 44, 58, 64, 68, 70, 82, 108, 127, 140, 143, 149, 163, 169, 173, 175, 187, 210, 222, 223, 224, 225, 227, 228, 230, 232, 238, 239, 240, 241, 255, 279, 280, 286, 287, 295, 298, 306, 314, 330, 335, 338, 339, 342, 344, 345, 356, 417], "trivial": [13, 230, 334, 344], "larg": [13, 76, 78, 79, 82, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 127, 131, 136, 138, 181, 183, 184, 187, 206, 207, 222, 230, 234, 237, 238, 239, 242, 253, 257, 262, 279, 280, 284, 285, 291, 292, 296, 298, 299, 301, 314, 318, 322, 324, 330, 332, 348, 353, 356, 360], "scale": [13, 14, 19, 22, 30, 32, 33, 38, 217, 222, 223, 224, 225, 228, 230, 231, 233, 237, 238, 242, 244, 253, 259, 279, 284, 291, 292, 297, 299, 300, 301, 302, 309, 311, 318, 319, 323, 324, 329, 338, 339, 345, 347, 350, 351, 354, 356, 357, 414], "capabl": [13, 223, 225, 228, 243, 244, 246, 258, 259, 261, 282, 284, 288, 289, 311, 314, 319, 320, 321, 324, 330, 338, 343, 345, 417], "allow": [13, 14, 16, 17, 19, 29, 33, 75, 76, 77, 78, 79, 87, 180, 181, 182, 183, 184, 192, 220, 222, 223, 224, 225, 227, 228, 238, 239, 241, 254, 256, 266, 280, 292, 296, 298, 299, 304, 305, 307, 311, 314, 317, 318, 321, 324, 327, 328, 331, 332, 333, 335, 337, 338, 339, 342, 345, 346, 347, 350, 351, 352, 353, 355, 356, 357, 358, 415], "introduc": [13, 38, 220, 230, 233, 238, 239, 241, 245, 246, 248, 250, 252, 253, 254, 256, 261, 262, 263, 264, 265, 280, 284, 287, 296, 297, 304, 318, 321, 332, 338, 343, 344, 345, 356, 359, 405], "propag": [13, 15, 28, 33, 35, 38, 220, 222, 223, 224, 225, 228, 230, 231, 233, 252, 265, 280, 286, 287, 288, 291, 292, 293, 294, 295, 298, 301, 309, 311, 312, 314, 315, 317, 319, 322, 332, 334, 340, 344, 347, 348, 352, 354, 357], "streamlin": 13, "interfac": [13, 14, 16, 23, 29, 34, 36, 220, 222, 224, 225, 229, 230, 294, 304, 305, 306, 307, 311, 314, 317, 321, 324, 326, 328, 338, 353, 356, 361, 417], "between": [13, 14, 16, 17, 20, 27, 33, 45, 46, 51, 53, 101, 102, 109, 117, 128, 136, 150, 151, 156, 158, 222, 224, 225, 227, 230, 231, 232, 233, 234, 238, 239, 240, 245, 246, 247, 253, 254, 255, 262, 266, 280, 291, 292, 293, 294, 296, 298, 299, 300, 301, 304, 307, 314, 319, 330, 331, 333, 334, 338, 339, 341, 342, 343, 344, 345, 347, 352, 356, 357], "exist": [13, 14, 16, 33, 35, 38, 58, 163, 222, 223, 224, 225, 227, 228, 230, 238, 245, 247, 261, 262, 284, 285, 299, 309, 315, 317, 321, 322, 324, 326, 338, 339, 345, 350, 351, 356, 405], "dataset": [13, 14, 16, 33, 100, 140, 144, 205, 210, 214, 222, 223, 224, 225, 228, 230, 231, 239, 244, 245, 253, 254, 259, 262, 266, 282, 296, 297, 309, 315, 317, 319, 321, 322, 324, 333, 338, 342, 344, 345, 346, 405], "wide": [13, 29, 45, 69, 150, 174, 222, 230, 234, 280, 299, 334, 344], "openfoam": [13, 16, 222, 324], "adcirc": [13, 222, 245, 246], "peer": [13, 14, 222, 224, 225, 289, 291, 294, 296, 297, 298, 299, 300, 302, 309, 311, 314, 318, 320, 321, 349, 350, 354, 357, 417], "strong": [13, 33, 44, 112, 131, 149, 245, 249, 262, 346, 417], "ground": [13, 19, 20, 27, 30, 33, 38, 40, 94, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 142, 143, 206, 216, 222, 224, 225, 229, 230, 233, 235, 238, 244, 245, 246, 248, 253, 254, 261, 262, 266, 280, 283, 285, 286, 287, 289, 291, 292, 296, 298, 301, 302, 309, 310, 311, 313, 314, 318, 319, 320, 321, 324, 339, 342, 345, 349, 351, 354, 356, 357, 405, 417], "motion": [13, 19, 27, 30, 33, 38, 40, 94, 216, 222, 224, 225, 229, 230, 233, 235, 280, 283, 285, 286, 287, 289, 291, 292, 296, 298, 301, 302, 310, 311, 313, 314, 318, 319, 320, 321, 342, 345, 349, 351, 354, 356, 357, 405, 417], "databas": [13, 14, 16, 33, 145, 215, 223, 224, 225, 228, 229, 238, 241, 245, 252, 256, 265, 278, 280, 289, 293, 294, 296, 299, 300, 309, 314, 318, 320, 321, 322, 323, 324, 339, 349, 352, 354], "To": [13, 14, 16, 17, 19, 21, 23, 24, 28, 34, 35, 36, 38, 230, 231, 232, 233, 238, 239, 245, 251, 253, 266, 280, 285, 290, 291, 292, 293, 298, 299, 300, 301, 304, 305, 307, 318, 327, 338, 343, 344, 345, 346, 347, 350, 351, 353, 356, 417], "do": [13, 14, 23, 33, 34, 35, 36, 54, 55, 58, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 101, 102, 159, 160, 163, 169, 186, 187, 188, 189, 190, 194, 195, 196, 218, 219, 230, 231, 233, 234, 239, 253, 261, 284, 291, 295, 299, 304, 307, 326, 328, 332, 335, 338, 339, 344, 345, 347, 350, 352, 355, 358], "develop": [13, 14, 16, 21, 24, 29, 33, 38, 44, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 131, 149, 206, 219, 220, 222, 223, 224, 225, 226, 227, 228, 229, 230, 233, 234, 236, 237, 238, 239, 241, 243, 244, 245, 246, 247, 248, 252, 253, 254, 258, 259, 260, 261, 262, 265, 266, 278, 279, 282, 285, 286, 296, 301, 302, 304, 305, 307, 310, 312, 313, 314, 316, 319, 323, 326, 338, 340, 345, 348, 353, 356], "pre": 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222, 238, 239, 245, 253, 260, 261, 284], "servic": [13, 14, 16, 29, 35, 92, 100, 197, 205, 206, 207, 208, 209, 221, 222, 224, 225, 237, 238, 239, 253, 254, 265, 266, 322, 352, 360], "addit": [13, 16, 19, 27, 29, 33, 34, 35, 36, 42, 147, 223, 225, 228, 229, 230, 232, 237, 240, 245, 246, 248, 253, 255, 257, 261, 278, 279, 280, 285, 287, 288, 289, 291, 299, 300, 301, 304, 305, 307, 312, 313, 314, 316, 318, 321, 323, 328, 332, 333, 335, 338, 342, 345, 356, 358, 359, 405, 417], "custom": [13, 19, 25, 27, 30, 32, 35, 222, 227, 230, 239, 245, 301, 314, 315, 321, 323], "produc": [13, 18, 20, 22, 23, 26, 28, 30, 32, 38, 39, 220, 230, 239, 260, 329, 332, 333, 342, 343, 344, 347, 352, 356], "among": [13, 26, 230, 234, 252, 262, 265, 292, 301, 333, 346, 347, 356], "autom": [13, 14, 220, 237, 238, 244, 246, 248, 253, 259, 282, 294, 302, 309, 324, 339, 354, 417], "acquisit": [13, 321], "inventori": [13, 19, 222, 233, 239, 240, 242, 244, 245, 246, 248, 254, 255, 257, 259, 260, 261, 278, 280, 282, 318, 319, 321], "brail": [13, 238, 253, 259, 262, 318, 321], "pass": [13, 14, 16, 26, 28, 29, 220, 230, 291, 304, 307, 312, 317, 328, 358], "regionalev": [13, 26], "modular": [13, 94, 355], "framework": [13, 14, 16, 217, 220, 222, 227, 230, 233, 247, 254, 262, 279, 312, 314, 321, 322, 329, 334, 339, 345], "incorpor": [13, 33, 222, 223, 224, 225, 228, 241, 244, 245, 253, 259, 260, 261, 282, 290, 292, 302, 310, 319, 322, 338, 356], "own": [13, 14, 24, 222, 223, 224, 225, 228, 233, 246, 248, 261, 312, 317, 328, 335, 339, 350, 351, 356, 358], "compon": [13, 15, 17, 20, 25, 28, 30, 32, 33, 35, 54, 55, 58, 59, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 159, 160, 163, 164, 169, 186, 187, 188, 189, 190, 194, 195, 196, 205, 206, 207, 208, 209, 220, 222, 227, 230, 232, 239, 241, 244, 252, 254, 256, 259, 265, 280, 282, 283, 285, 287, 292, 293, 294, 295, 299, 300, 301, 312, 313, 314, 315, 319, 327, 342, 345, 356, 360, 373, 405, 417], "so": [13, 14, 32, 35, 112, 131, 222, 230, 231, 232, 233, 234, 239, 241, 242, 245, 252, 254, 257, 261, 265, 266, 287, 291, 292, 295, 304, 305, 332, 339, 342, 344, 347, 351, 355, 357], "long": [13, 19, 23, 46, 51, 53, 70, 87, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 151, 156, 158, 175, 192, 206, 219, 222, 237, 238, 239, 257, 261, 329, 417], "meet": [13, 14, 16, 44, 68, 149, 173, 220, 239, 248], "detail": [13, 19, 22, 23, 24, 26, 33, 42, 44, 54, 55, 104, 109, 123, 128, 147, 149, 159, 160, 222, 224, 225, 229, 231, 233, 235, 237, 242, 246, 248, 250, 252, 257, 261, 262, 263, 265, 278, 279, 280, 282, 287, 290, 293, 299, 300, 301, 314, 319, 328, 331, 334, 339, 341, 343, 344, 345, 346, 356, 360], "schema": [13, 19, 20, 222, 239, 254], "c4": [13, 14, 17], "dl": [13, 15, 16, 19, 20, 23, 26, 27, 28, 30, 32, 216, 242, 257, 294, 314, 321], "infrastructur": [13, 14, 222, 233, 261, 262, 278, 283, 288, 318, 319, 321], "given": [13, 14, 16, 19, 33, 222, 229, 230, 231, 232, 233, 234, 238, 239, 244, 245, 246, 248, 252, 253, 254, 259, 261, 262, 264, 265, 266, 287, 289, 291, 293, 296, 297, 300, 309, 310, 311, 322, 329, 331, 332, 335, 336, 339, 341, 342, 343, 345, 347, 349, 350, 351, 352, 354, 356, 417], "lifelin": [13, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 140, 210, 222, 227, 233, 319], "level": [13, 20, 25, 30, 38, 97, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 202, 222, 229, 230, 232, 233, 238, 239, 240, 241, 244, 247, 252, 253, 255, 256, 259, 260, 262, 265, 266, 278, 279, 280, 282, 284, 285, 290, 291, 301, 304, 313, 332, 333, 339, 356, 415], "learn": [13, 222, 223, 224, 225, 228, 230, 238, 253, 262, 296, 299, 302, 309, 312, 315, 317, 322, 326, 340, 345, 348, 352, 355], "consequ": [13, 14, 35, 54, 55, 68, 75, 76, 77, 78, 79, 94, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 206, 207, 208, 209, 211, 212, 213, 222, 227, 231, 284, 304, 307, 312, 314, 321, 330, 332, 338, 344], "experiment": [13, 14, 222, 227, 231, 316, 323, 329, 334, 344], "futur": [13, 222, 223, 224, 225, 226, 227, 228, 246, 247, 262, 265, 266, 272, 284, 285, 300, 314, 316, 342, 345, 356, 357, 417], "base": [13, 14, 16, 27, 30, 32, 33, 34, 36, 38, 39, 41, 47, 51, 53, 59, 62, 64, 66, 68, 75, 76, 77, 78, 79, 81, 83, 84, 87, 89, 90, 91, 94, 97, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 140, 144, 146, 152, 156, 158, 164, 167, 169, 171, 173, 180, 181, 182, 183, 184, 186, 188, 189, 192, 194, 195, 196, 202, 205, 206, 207, 208, 210, 214, 218, 219, 222, 223, 224, 225, 227, 228, 229, 231, 233, 234, 235, 238, 239, 240, 241, 245, 247, 250, 252, 253, 254, 255, 262, 264, 265, 266, 278, 279, 280, 283, 285, 286, 291, 292, 294, 295, 300, 301, 302, 307, 309, 310, 311, 313, 314, 315, 317, 319, 321, 322, 324, 328, 329, 330, 331, 332, 333, 334, 335, 339, 342, 343, 344, 345, 346, 349, 352, 354, 356, 357, 417], "ai": [13, 222, 318], "within": [13, 28, 30, 33, 39, 54, 55, 58, 94, 159, 160, 163, 230, 231, 238, 239, 240, 241, 244, 247, 254, 255, 256, 259, 280, 282, 292, 298, 299, 300, 317, 326, 327, 330, 331, 335, 339, 341, 343, 346, 347, 351, 356], "sever": [13, 14, 16, 20, 32, 33, 101, 102, 229, 233, 234, 238, 239, 246, 253, 254, 261, 266, 279, 280, 288, 292, 299, 300, 301, 307, 314, 324, 331, 345, 347, 356], "open": [13, 14, 16, 23, 34, 35, 36, 38, 51, 53, 69, 108, 119, 127, 138, 156, 158, 174, 222, 223, 224, 225, 228, 232, 237, 238, 239, 241, 245, 247, 249, 253, 254, 260, 262, 266, 279, 280, 286, 288, 289, 291, 295, 304, 305, 307, 309, 314, 322, 326, 339, 342, 350, 351, 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16, 23, 40, 53, 158, 308, 345], "present": [13, 14, 16, 17, 29, 33, 35, 116, 135, 222, 223, 225, 228, 230, 232, 234, 237, 238, 245, 247, 253, 262, 266, 285, 291, 292, 295, 301, 309, 315, 322, 330, 331, 335, 339, 344, 345, 346, 347, 349, 359, 360], "encourag": [13, 16, 24, 254, 261, 288, 289, 310, 313, 314, 316, 319, 320, 333, 339, 352, 356, 360, 417], "adopt": [13, 16, 231, 234, 238, 239, 245, 246, 247, 248, 250, 254, 259, 261, 262, 266, 285, 292, 293, 314, 338], "graphic": [13, 14, 16, 222, 223, 224, 225, 228, 291, 295, 339, 359, 361], "approach": [13, 16, 29, 222, 230, 231, 232, 238, 239, 241, 242, 244, 245, 247, 250, 253, 254, 257, 259, 261, 262, 285, 286, 288, 299, 301, 314, 319, 332, 333, 343, 345, 356], "diagram": [13, 28, 356], "describ": [13, 16, 19, 20, 33, 51, 53, 156, 158, 229, 231, 234, 236, 237, 238, 239, 241, 244, 245, 247, 252, 253, 254, 256, 259, 262, 265, 282, 285, 287, 292, 300, 312, 328, 335, 338, 339, 342, 355, 356, 360], "variou": [13, 222, 223, 224, 225, 227, 228, 230, 234, 238, 239, 246, 247, 248, 253, 254, 261, 262, 266, 280, 285, 288, 291, 292, 302, 314, 321, 326, 339, 342, 348, 352, 356], "abstract": [13, 16, 29, 220, 222, 328], "top": [13, 16, 30, 33, 39, 51, 53, 109, 111, 128, 130, 156, 158, 222, 238, 239, 240, 241, 242, 253, 255, 291, 293, 294, 295, 296, 301, 304, 339, 342, 343, 350, 351, 352, 356, 357, 360], "down": [13, 14, 16, 26, 29, 51, 53, 156, 158, 225, 237, 245, 261, 279, 280, 291, 292, 295, 304, 305, 330, 332, 333, 335, 338, 339, 348, 349, 352, 353, 355, 358, 360], "start": [13, 14, 16, 19, 20, 26, 28, 29, 35, 38, 222, 223, 224, 225, 226, 227, 228, 231, 237, 239, 246, 259, 261, 290, 292, 294, 296, 301, 304, 305, 306, 307, 324, 326, 327, 329, 330, 331, 342, 345, 350, 353, 357, 358, 405], "show": [13, 14, 16, 33, 35, 38, 39, 222, 223, 224, 225, 228, 229, 230, 231, 233, 234, 237, 238, 245, 251, 253, 257, 260, 262, 264, 266, 280, 283, 286, 291, 292, 293, 294, 295, 297, 298, 299, 300, 301, 302, 307, 317, 326, 329, 332, 333, 334, 338, 346, 347, 350, 352, 356, 357, 359, 360], "how": [13, 14, 16, 21, 22, 23, 26, 27, 31, 230, 238, 239, 244, 246, 247, 248, 253, 254, 259, 261, 290, 291, 292, 293, 299, 300, 301, 302, 335, 345, 352, 357, 373, 405, 417], "would": [13, 16, 23, 35, 115, 134, 223, 225, 228, 229, 230, 233, 234, 237, 238, 241, 243, 244, 245, 252, 254, 256, 257, 258, 259, 265, 266, 281, 282, 284, 288, 289, 290, 291, 292, 295, 296, 300, 342, 358, 417], "interact": [13, 14, 16, 17, 222, 224, 225, 230, 245, 261, 299, 300, 301, 315, 321, 334, 344, 346, 352], "drill": [13, 16, 142], "three": [13, 16, 19, 24, 30, 33, 51, 53, 97, 156, 158, 202, 230, 233, 234, 239, 245, 251, 252, 253, 254, 265, 266, 283, 284, 285, 291, 294, 295, 299, 301, 302, 304, 305, 330, 332, 339, 345, 352, 356], "typic": [13, 16, 20, 109, 112, 114, 118, 119, 121, 122, 128, 131, 133, 137, 138, 207, 208, 220, 230, 232, 233, 234, 238, 239, 253, 254, 279, 291, 292, 296, 299, 304, 305, 307, 326, 329, 330, 331, 345, 347, 349, 350, 356], "uml": [13, 16, 17], "wa": [13, 14, 16, 23, 33, 35, 38, 39, 47, 64, 152, 169, 233, 234, 237, 238, 239, 244, 245, 246, 253, 254, 260, 261, 262, 266, 278, 279, 280, 283, 284, 298, 300, 301, 304, 305, 307, 309, 312, 314, 315, 317, 318, 322, 326, 335, 339, 356, 359, 417], "divers": [13, 16, 261, 262, 352], "knowledg": [13, 16, 222], "understand": [13, 14, 16, 17, 26, 230, 233, 239, 246, 248, 251, 261, 262, 266, 291, 292, 295, 326, 333, 334, 343, 344], "behind": [13, 16, 231, 232, 335], "fit": [13, 14, 16, 29, 46, 64, 151, 169, 221, 222, 227, 230, 233, 234, 238, 241, 252, 253, 256, 265, 299, 315, 330, 331, 333, 338, 343], "four": [13, 16, 19, 20, 32, 39, 141, 230, 233, 238, 239, 242, 251, 254, 257, 260, 266, 279, 283, 291, 293, 294, 298, 331, 333, 337, 338, 339, 360], "real": [13, 222, 229, 231, 238, 245, 253, 266, 278, 292, 316, 328, 347, 356], "world": [13, 14, 16, 222, 231, 238, 253, 279, 292, 316], "term": [13, 23, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 220, 222, 230, 231, 232, 238, 239, 252, 253, 254, 261, 265, 287, 300, 332, 335, 344, 345, 347, 356, 405], "peopl": [13, 284, 285], "who": [13, 29, 244, 246, 248, 261, 282, 284, 335, 336, 339, 345, 352], "other": [13, 14, 16, 19, 23, 29, 32, 33, 43, 54, 55, 73, 92, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 148, 159, 160, 178, 197, 206, 221, 222, 223, 224, 225, 227, 228, 229, 230, 232, 233, 238, 239, 241, 242, 244, 245, 246, 247, 249, 251, 253, 254, 259, 261, 262, 266, 278, 279, 280, 282, 288, 292, 293, 294, 295, 297, 299, 300, 301, 304, 305, 307, 314, 319, 321, 328, 332, 333, 334, 335, 336, 339, 343, 344, 345, 346, 350, 351, 353, 354, 356], "up": [13, 14, 15, 16, 23, 26, 28, 35, 38, 41, 42, 43, 44, 45, 46, 47, 48, 49, 64, 73, 81, 82, 84, 85, 89, 90, 91, 101, 102, 104, 105, 106, 107, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 141, 142, 143, 151, 153, 154, 206, 207, 208, 209, 211, 212, 213, 220, 233, 235, 237, 239, 241, 242, 245, 254, 256, 257, 262, 266, 284, 285, 291, 293, 294, 297, 301, 304, 305, 306, 307, 312, 314, 317, 324, 326, 338, 350, 352, 353, 356, 357], "individu": [13, 14, 16, 22, 24, 26, 28, 35, 220, 222, 223, 224, 225, 228, 233, 234, 237, 238, 240, 242, 244, 246, 247, 248, 252, 253, 255, 257, 259, 261, 262, 264, 265, 280, 285, 291, 292, 295, 326, 329, 330, 339, 347, 348, 352, 356], "implement": [13, 27, 33, 39, 40, 220, 222, 223, 224, 225, 226, 227, 228, 230, 232, 233, 234, 236, 238, 239, 241, 245, 246, 248, 250, 252, 253, 254, 255, 256, 259, 261, 263, 264, 265, 266, 280, 284, 287, 301, 319, 320, 324, 328, 329, 335, 342, 344, 345, 355, 356, 405, 417], "thei": [13, 14, 16, 23, 33, 35, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 220, 222, 227, 229, 230, 232, 234, 238, 239, 240, 245, 254, 255, 280, 288, 289, 291, 295, 299, 304, 305, 307, 314, 316, 332, 334, 335, 336, 338, 339, 343, 345, 346, 347, 350, 351, 353, 355, 405, 417], "section": [13, 21, 26, 29, 35, 38, 83, 114, 133, 188, 223, 225, 228, 230, 232, 233, 234, 237, 238, 239, 242, 245, 252, 253, 254, 257, 259, 264, 265, 266, 280, 287, 290, 291, 293, 294, 304, 305, 307, 321, 332, 335, 339, 345, 360], "definit": [13, 19, 33, 220, 222, 229, 230, 234, 239, 254, 314, 318, 320, 338, 339, 347, 356], "busi": [13, 29, 220, 221, 222, 227, 237, 239, 247], "whole": [13, 220, 238, 239, 332, 333, 345], "part": [13, 35, 70, 100, 175, 205, 220, 222, 227, 230, 233, 238, 240, 245, 249, 254, 255, 295, 314, 332, 333, 338, 339, 346, 350, 351, 353, 356], "dure": [13, 16, 19, 24, 33, 104, 123, 220, 230, 231, 233, 238, 239, 245, 253, 261, 262, 285, 298, 312, 324, 326, 329, 331, 346, 347, 353, 417], "particip": [13, 220], "anoth": [13, 14, 16, 220, 230, 238, 253, 311, 314, 332, 333, 343, 345, 350], "action": [13, 220, 222, 238, 239, 245, 247, 254, 280, 326], "accord": [13, 18, 53, 118, 137, 158, 220, 238, 239, 240, 245, 253, 254, 255, 257, 356], "rule": [13, 220, 231, 239, 241, 252, 254, 265, 356], "manag": [13, 14, 35, 220, 230, 241, 245, 247, 253, 254, 256, 262, 265, 266, 279, 285, 314, 326, 348], "coalit": [13, 220], "oper": [13, 23, 35, 220, 222, 223, 224, 225, 228, 230, 231, 238, 262, 279, 303, 304, 306, 307, 308, 351], "resid": [13, 118, 137, 220, 237, 238, 240, 247, 253, 255, 285], "can": [13, 14, 16, 19, 23, 26, 27, 29, 30, 32, 33, 34, 35, 36, 38, 39, 101, 102, 104, 108, 112, 117, 123, 127, 131, 136, 220, 222, 223, 224, 225, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 252, 253, 254, 255, 257, 259, 260, 261, 262, 264, 265, 266, 279, 280, 282, 285, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 304, 305, 306, 307, 308, 312, 314, 315, 316, 322, 323, 326, 328, 329, 330, 331, 332, 333, 334, 335, 336, 338, 339, 341, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 360, 373, 405, 417], "self": [13, 220, 328, 329], "group": [13, 16, 19, 20, 30, 32, 33, 121, 122, 206, 207, 208, 209, 220, 222, 225, 227, 230, 237, 239, 241, 245, 246, 251, 254, 261, 280, 295, 314, 315, 338, 343, 345, 346], "loos": [13, 220], "coupl": [13, 77, 182, 220, 222, 223, 224, 225, 227, 228, 241, 244, 245, 251, 256, 259, 280, 282, 343, 356], "coordin": [13, 19, 33, 220, 227, 238, 240, 245, 253, 255, 262, 339], "consum": [13, 220, 230, 333], "subsequ": [13, 14, 16, 58, 163, 220, 237, 257, 286, 292, 322, 328, 356], "becaus": [13, 32, 33, 220, 229, 232, 234, 239, 241, 245, 254, 256, 291, 300, 301, 304, 307, 332, 335, 344, 345, 358, 359], "scientist": [13, 220], "visual": [13, 34, 35, 36, 220, 222, 223, 224, 225, 228, 230, 238, 242, 245, 247, 253, 257, 262, 266, 279, 285, 296, 297, 298, 311, 317, 319, 320, 321, 324, 327, 342, 354, 356, 360], "ever": [13, 29, 220], "increas": [13, 30, 220, 222, 227, 231, 232, 233, 234, 238, 241, 244, 247, 253, 259, 262, 264, 266, 280, 282, 285, 290, 299, 301, 304, 314, 317, 344, 345, 346, 405], "amount": [13, 101, 102, 220, 222, 230, 238, 253, 345], "One": [13, 33, 83, 87, 188, 192, 222, 230, 238, 242, 257, 285, 296, 297, 299, 345], "aid": [13, 220, 222, 223, 224, 225, 228, 324, 326, 343], "schedul": [13, 14, 220], "monitor": [13, 14, 16, 94, 220, 222, 242, 257, 324], "defin": [13, 14, 19, 24, 26, 27, 29, 30, 33, 35, 58, 73, 101, 102, 163, 178, 220, 222, 223, 224, 225, 227, 228, 229, 230, 231, 234, 239, 240, 241, 245, 247, 253, 254, 255, 256, 260, 262, 278, 279, 285, 286, 289, 291, 292, 293, 294, 295, 296, 298, 302, 304, 306, 307, 309, 311, 312, 314, 315, 318, 320, 321, 322, 328, 329, 330, 331, 332, 335, 338, 339, 341, 343, 344, 345, 346, 348, 350, 351, 352, 354, 356, 361, 373, 405, 413, 414], "collect": [13, 14, 20, 23, 26, 33, 40, 145, 215, 222, 231, 233, 237, 238, 239, 253, 262, 266, 278, 285, 314, 337, 360], "domain": [13, 220, 222, 230, 238, 283, 291, 310, 322, 330, 331, 332, 333, 345, 352, 405], "exampl": [13, 14, 19, 20, 21, 22, 23, 24, 26, 29, 30, 32, 33, 35, 38, 39, 121, 122, 207, 208, 220, 222, 223, 224, 225, 228, 229, 230, 233, 238, 239, 240, 241, 252, 253, 254, 255, 256, 257, 265, 279, 284, 286, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 306, 307, 314, 316, 317, 323, 324, 326, 328, 329, 330, 333, 338, 339, 342, 343, 344, 345, 346, 347, 350, 351, 352, 354, 356, 357, 358, 417], "clear": [13, 230, 239, 241, 254, 264, 345], "extend": [13, 30, 51, 53, 156, 158, 220, 222, 227, 233, 238, 239, 244, 245, 246, 248, 254, 259, 261, 262, 280, 291, 304, 305, 312, 314, 323, 335, 338, 356, 417], "context": [13, 231, 246, 248, 261, 284, 373], "i": [13, 14, 16, 19, 23, 24, 32, 35, 38, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 135, 206, 216, 222, 223, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 237, 239, 240, 241, 245, 249, 250, 254, 255, 259, 264, 266, 278, 280, 287, 290, 291, 292, 295, 296, 298, 299, 300, 301, 304, 307, 314, 318, 320, 329, 330, 332, 338, 339, 343, 344, 345, 346, 347, 349, 350, 351, 352, 356, 358, 417], "shown": [13, 14, 16, 26, 27, 28, 33, 35, 38, 39, 42, 147, 222, 230, 231, 237, 238, 242, 245, 251, 253, 257, 264, 280, 290, 291, 292, 293, 295, 298, 299, 300, 301, 304, 306, 307, 328, 330, 331, 332, 333, 334, 335, 337, 338, 339, 343, 345, 347, 348, 350, 351, 352, 355, 356, 357, 358, 359, 360], "we": [13, 16, 17, 23, 33, 35, 40, 229, 230, 233, 237, 239, 253, 266, 280, 284, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 310, 313, 314, 316, 319, 320, 323, 332, 338, 344, 345, 347, 348, 350, 351, 352, 358, 360], "hydrouq": [13, 222], "pbe": [13, 16, 219, 299, 312, 314], "box": [13, 14, 38, 51, 53, 83, 97, 143, 156, 158, 188, 202, 237, 238, 253, 293, 294, 301, 305, 306, 307, 311, 318, 320, 328, 339, 343, 348, 352, 356], "center": [13, 14, 16, 33, 51, 53, 54, 90, 156, 158, 159, 195, 230, 231, 237, 238, 245, 253, 260, 262, 283, 288, 292, 299, 332, 352, 356, 417], "surround": [13, 14, 16, 116, 135, 239, 247, 284, 285, 323], "datadepot": [13, 14], "either": [13, 14, 16, 23, 29, 58, 70, 81, 82, 83, 84, 85, 89, 90, 91, 101, 102, 110, 129, 163, 175, 186, 187, 188, 189, 190, 194, 195, 196, 233, 245, 247, 253, 266, 332, 333, 336, 338, 339, 343, 344, 345, 347, 352, 355, 356, 358, 359, 360, 405, 417], "local": [13, 14, 16, 20, 21, 24, 26, 30, 32, 34, 35, 36, 38, 222, 224, 225, 230, 231, 237, 239, 240, 245, 246, 248, 254, 255, 257, 262, 278, 279, 287, 288, 304, 306, 315, 317, 320, 324, 326, 328, 331, 339, 345, 348, 352, 356, 360, 405, 417], "desktop": [13, 14, 16, 21, 30, 32, 35, 94, 222, 223, 224, 225, 228, 291, 295, 304, 306, 307, 326, 327, 345], "hpc": [13, 14, 16, 222, 223, 224, 225, 228, 231, 248, 328], "environ": [13, 14, 34, 36, 217, 222, 223, 224, 225, 228, 247, 259, 261, 266, 317, 326], "demonstr": [13, 14, 16, 31, 33, 222, 223, 224, 225, 228, 233, 238, 239, 244, 245, 246, 247, 248, 251, 253, 254, 259, 261, 262, 285, 291, 294, 295, 296, 297, 299, 301, 302, 314, 316, 324, 342], "broken": [13, 14, 16, 26, 223, 225, 228, 237, 279], "split": [13, 237, 238, 239, 279, 291, 332, 356, 358], "two": [13, 14, 16, 19, 23, 28, 30, 32, 33, 35, 38, 42, 70, 108, 127, 141, 147, 175, 222, 224, 225, 229, 230, 232, 234, 237, 238, 239, 241, 245, 246, 247, 248, 251, 252, 253, 254, 256, 257, 261, 264, 265, 266, 278, 280, 287, 291, 292, 293, 295, 296, 297, 298, 299, 300, 301, 302, 304, 314, 328, 329, 330, 333, 334, 335, 339, 342, 343, 344, 345, 347, 350, 351, 352, 355, 356], "front": [13, 16, 238, 253, 326], "end": [13, 16, 19, 28, 30, 50, 53, 66, 155, 158, 171, 222, 224, 225, 230, 231, 232, 238, 246, 248, 253, 261, 291, 304, 307, 326, 338, 341, 343, 345, 356], "ui": [13, 14, 16, 35, 237, 317, 326, 356, 360], "back": [13, 16, 97, 202, 230, 234, 237, 246, 247, 261, 282, 295, 304, 307, 314, 326, 342, 360], "cross": [13, 14, 16, 83, 188, 230, 234, 238, 239, 240, 243, 254, 255, 258, 259, 294, 297, 299, 345, 405], "platform": [13, 14, 16, 23, 24, 222, 223, 224, 225, 228, 266, 294, 302, 304, 305, 307, 339, 342, 356, 417], "qt": [13, 14, 16, 29], "come": [13, 14, 16, 223, 225, 228, 230, 232, 304, 307, 314], "form": [13, 14, 16, 17, 23, 29, 51, 52, 53, 156, 157, 158, 221, 230, 231, 234, 238, 239, 241, 252, 253, 254, 265, 287, 298, 305, 317, 329, 332, 333, 345, 352, 357, 358, 359], "where": [13, 14, 16, 19, 20, 22, 23, 27, 30, 32, 33, 41, 42, 58, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 146, 147, 163, 222, 223, 224, 225, 228, 229, 230, 231, 232, 233, 234, 238, 239, 240, 241, 242, 243, 244, 249, 250, 254, 255, 257, 258, 259, 262, 264, 266, 279, 280, 282, 283, 286, 295, 297, 299, 300, 301, 302, 304, 307, 314, 328, 329, 330, 332, 335, 338, 339, 341, 343, 345, 346, 347, 348, 356, 358, 360], "possibl": [13, 14, 16, 27, 29, 117, 136, 221, 222, 223, 224, 225, 226, 227, 228, 232, 233, 238, 239, 240, 241, 243, 246, 252, 254, 255, 256, 258, 262, 265, 266, 280, 287, 296, 297, 298, 299, 345, 346, 350, 351, 352, 353], "made": [13, 14, 16, 101, 102, 222, 231, 237, 239, 240, 244, 245, 246, 247, 248, 251, 255, 259, 261, 262, 282, 288, 291, 295, 304, 305, 307, 314, 317, 346, 348, 353, 356, 417], "now": [13, 14, 16, 35, 38, 230, 233, 237, 291, 293, 294, 295, 304, 305, 311, 314, 328, 339, 354, 356, 358], "break": [13, 14, 16, 222, 241, 245, 247, 279, 314], "major": [13, 14, 16, 33, 117, 119, 136, 138, 141, 143, 229, 233, 238, 242, 251, 253, 257, 261, 264, 266, 279, 292, 294, 296, 314, 318, 344], "block": [13, 14, 16, 29, 35, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 53, 54, 55, 57, 58, 59, 62, 64, 66, 67, 68, 69, 70, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 142, 143, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 206, 207, 208, 209, 211, 212, 213, 231, 247, 262, 285, 314, 346, 347, 358], "terminolog": [13, 14, 16, 238, 253, 332], "outlin": [13, 14, 16, 26, 29, 35, 240, 255, 318, 356], "widget": [13, 14, 16, 29, 233, 297, 301, 321, 326, 337, 339, 350, 351, 356, 359, 373], "jigsaw": [13, 14, 16], "puzzl": [13, 14, 16], "analog": [13, 14, 16], "piec": [13, 14, 16, 279, 339], "displai": [13, 14, 16, 26, 230, 238, 245, 253, 291, 292, 293, 294, 295, 296, 298, 299, 300, 304, 307, 315, 317, 326, 336, 337, 338, 339, 345, 352, 356, 358, 359, 360], "when": [13, 14, 16, 20, 23, 24, 28, 29, 33, 34, 35, 36, 38, 39, 101, 102, 106, 116, 125, 135, 222, 223, 224, 225, 228, 230, 231, 232, 234, 238, 239, 240, 241, 242, 243, 245, 246, 253, 255, 256, 257, 258, 261, 266, 281, 290, 291, 292, 293, 294, 295, 296, 298, 299, 300, 301, 304, 305, 306, 307, 314, 316, 317, 326, 327, 329, 330, 331, 332, 334, 335, 336, 338, 339, 343, 344, 345, 346, 347, 348, 350, 351, 352, 356, 357, 358, 405], "choos": [13, 14, 25, 38, 222, 227, 238, 240, 291, 292, 293, 295, 297, 298, 305, 307, 317, 335, 339, 341, 343, 350, 351, 352, 356, 357], "remot": [13, 14, 16, 20, 21, 24, 26, 28, 35, 222, 223, 224, 225, 228, 242, 257, 288, 317, 320, 326, 328, 345, 360, 405], "job": [13, 14, 16, 20, 22, 24, 26, 242, 257, 326, 348, 359, 360], "previous": [13, 14, 16, 24, 234, 262, 291, 342, 346, 353], "As": [13, 14, 16, 32, 33, 35, 39, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 234, 237, 238, 239, 240, 245, 246, 247, 252, 253, 254, 255, 257, 262, 264, 265, 266, 280, 287, 288, 292, 293, 294, 295, 301, 304, 305, 307, 328, 330, 332, 335, 339, 344, 352, 353, 356, 357, 358], "seen": [13, 14, 16, 38, 39, 251, 266, 295, 339], "http": [13, 14, 16, 23, 35, 100, 205, 217, 230, 237, 238, 239, 241, 245, 247, 253, 254, 259, 262, 265, 266, 278, 283, 284, 299, 338, 342, 345, 352, 356, 417], "request": [13, 14, 16, 26, 222, 223, 224, 225, 228, 243, 258, 284, 288, 289, 314, 321, 326, 328, 336, 338, 339, 348, 354, 417], "tapi": [13, 14, 16, 26], "rest": [13, 14, 16, 32, 232, 253, 291, 330], "api": [13, 14, 16, 23, 35, 233, 238, 253], "remoteservic": [13, 14, 16], "compris": [13, 14, 29, 35, 238, 253, 360], "femuq": [13, 14, 16], "py": [13, 14, 16, 22, 26, 30, 32, 33, 38, 242, 248, 257, 291, 292, 326, 328, 342, 356], "workflow_driv": [13, 16, 33], "launch": [13, 14, 16, 222, 223, 224, 225, 228, 242, 257, 288, 291, 292, 293, 294, 295, 296, 297, 298, 306, 360], "choic": [13, 16, 27, 229, 230, 238, 239, 253, 254, 305, 328, 335], "workflowappl": [13, 14, 16, 22, 26, 30, 32], "map": [13, 15, 16, 26, 30, 32, 33, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 222, 229, 230, 231, 233, 237, 238, 239, 240, 242, 247, 253, 254, 257, 260, 262, 264, 266, 283, 296, 297, 312, 314, 315, 318, 320, 339, 342], "modifi": [13, 14, 16, 38, 39, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 233, 288, 292, 294, 300, 304, 307, 311, 338, 339, 356, 358], "o": [13, 14, 16, 62, 66, 167, 171, 230, 259, 266, 304, 338, 343], "need": [13, 14, 16, 29, 33, 34, 35, 36, 67, 172, 222, 223, 224, 225, 226, 227, 228, 229, 230, 233, 234, 237, 238, 240, 242, 244, 255, 257, 259, 262, 266, 279, 282, 291, 298, 303, 304, 305, 307, 314, 317, 328, 330, 331, 333, 335, 339, 342, 344, 345, 347, 352, 355, 356, 358, 360, 405], "recompil": [13, 14, 16], "control": [13, 14, 16, 86, 90, 191, 195, 222, 227, 229, 230, 231, 247, 261, 291, 295, 301, 324, 335, 339, 347, 352, 357], "repeatedli": [13, 14, 16], "invok": [13, 14, 16, 29, 304, 307, 326, 328, 342, 354, 358], "figur": [13, 14, 16, 38, 39, 222, 230, 231, 233, 234, 237, 247, 257, 280, 285, 291, 292, 293, 295, 296, 298, 299, 300, 304, 307, 330, 332, 334, 338, 345, 346, 347, 352, 356, 357, 358, 359], "hydro": [13, 16], "r2d_workflow": [13, 16, 22, 30, 32], "best": [13, 16, 24, 64, 169, 230, 236, 238, 246, 253, 261, 262, 266, 331, 332, 335, 339], "understood": [13, 16, 230, 239, 254], "look": [13, 16, 35, 108, 127, 295, 302, 304, 307, 311, 314, 326, 352, 356, 358, 373], "press": [13, 16, 230, 291, 298, 299, 305, 307, 338, 350, 351, 353, 356, 359], "button": [13, 16, 35, 38, 233, 237, 242, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 311, 317, 326, 335, 338, 339, 342, 345, 350, 351, 352, 353, 354, 357, 359, 360], "temporari": [13, 16, 206, 207, 208, 209, 230, 237, 299, 300, 326, 328, 345], "tmp": [13, 16, 23, 326, 339, 353], "insid": [13, 14, 16, 33, 34, 35, 36, 112, 131, 222, 230, 238, 239, 253, 254, 304, 305, 307, 314, 343, 356], "templatedir": [13, 16, 22, 33, 326], "copyfil": [13, 16], "tell": [13, 16, 291], "copi": [13, 16, 35, 38, 44, 51, 53, 149, 156, 158, 242, 257, 291, 295, 304, 307, 345], "outputtojson": [13, 16, 29], "outputappdatatojson": [13, 16], "augment": [13, 16, 247, 262, 285, 299], "ha": [13, 14, 16, 23, 29, 30, 33, 38, 41, 42, 44, 94, 101, 102, 146, 147, 149, 220, 222, 229, 230, 232, 237, 238, 239, 240, 242, 245, 246, 247, 252, 253, 254, 255, 260, 261, 265, 266, 279, 280, 288, 291, 293, 295, 304, 307, 308, 328, 329, 332, 334, 335, 339, 343, 344, 347, 348, 350, 353, 356, 358], "also": [13, 14, 16, 19, 23, 26, 33, 34, 35, 36, 51, 53, 54, 122, 156, 158, 159, 208, 229, 230, 231, 232, 233, 234, 238, 239, 240, 242, 245, 246, 247, 253, 254, 255, 257, 259, 261, 262, 264, 266, 278, 279, 280, 285, 287, 288, 289, 291, 292, 294, 295, 299, 300, 301, 302, 304, 305, 307, 316, 320, 326, 328, 330, 331, 332, 333, 334, 335, 338, 339, 342, 344, 345, 346, 347, 350, 351, 352, 356, 357, 373], "spin": [13, 14, 16, 262, 291, 328], "until": [13, 14, 16, 24, 231, 239, 254, 266, 314, 332, 341, 343, 356], "signal": [13, 16, 29], "been": [13, 14, 16, 23, 30, 33, 44, 100, 101, 102, 149, 205, 220, 223, 225, 228, 232, 238, 239, 240, 246, 247, 253, 255, 261, 285, 304, 307, 308, 326, 328, 332, 346, 348, 350, 352, 356, 357], "over": [13, 14, 16, 51, 53, 119, 138, 156, 158, 222, 230, 233, 239, 241, 244, 245, 246, 247, 249, 253, 254, 259, 261, 262, 266, 279, 280, 283, 285, 304, 333, 345, 352, 356, 360, 405, 415], "argument": [13, 14, 16, 33, 35, 338, 347], "full": [13, 16, 22, 26, 30, 32, 35, 39, 46, 51, 54, 55, 62, 66, 104, 112, 122, 123, 131, 151, 156, 159, 160, 167, 171, 208, 222, 224, 225, 233, 238, 247, 253, 264, 266, 279, 285, 347, 356, 373, 405, 413], "path": [13, 16, 19, 22, 24, 26, 30, 32, 35, 38, 239, 241, 242, 254, 256, 257, 283, 285, 291, 292, 304, 305, 306, 307, 317, 328, 329, 330, 336, 339, 342, 346, 347, 350, 351, 356, 360, 373, 405, 413], "out": [13, 16, 22, 23, 24, 26, 29, 35, 38, 53, 54, 108, 127, 158, 159, 221, 229, 230, 231, 234, 237, 246, 261, 266, 291, 295, 299, 319, 323, 326, 329, 330, 331, 333, 334, 339, 344, 345, 347, 356, 358, 405], "singl": [13, 14, 16, 20, 28, 30, 33, 38, 39, 42, 46, 51, 53, 97, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 133, 137, 143, 147, 151, 156, 158, 202, 206, 207, 208, 209, 222, 229, 230, 231, 232, 233, 237, 238, 240, 241, 247, 253, 255, 256, 262, 264, 278, 285, 291, 298, 299, 300, 301, 304, 305, 331, 332, 343, 352, 356, 358], "line": [13, 14, 16, 26, 35, 83, 119, 138, 188, 222, 223, 224, 225, 228, 237, 238, 239, 253, 254, 264, 291, 293, 295, 304, 305, 326, 328, 332, 339, 345, 347, 350, 351, 356, 358], "space": [13, 16, 30, 33, 44, 50, 53, 70, 117, 136, 149, 155, 158, 175, 230, 231, 234, 238, 239, 245, 253, 264, 266, 283, 291, 295, 299, 306, 317, 328, 329, 330, 332, 339, 341, 342, 343, 344, 345, 347, 348, 350, 353, 405], "separ": [13, 14, 16, 22, 35, 101, 102, 234, 237, 238, 239, 253, 279, 291, 292, 298, 314, 315, 326, 328, 329, 330, 339, 342, 344, 345, 347, 350, 351, 356, 405], "suppli": [13, 14, 16, 82, 187, 222, 224, 225, 311, 317, 322, 347, 349, 354], "getrv": [13, 16, 26], "uqengin": [13, 16], "actual": [13, 14, 16, 54, 55, 94, 159, 160, 230, 238, 245, 247, 253, 266, 299, 300, 301, 304, 307, 334, 335, 343, 345], "param": [13, 16, 29, 328, 347], "done": [13, 14, 16, 34, 35, 36, 38, 222, 229, 242, 257, 291, 292, 293, 294, 296, 301, 328, 339, 347, 350, 351, 352, 356, 357], "notifi": [13, 16], "uqpreprocessor": [13, 16], "read": [13, 16, 18, 24, 25, 28, 29, 30, 38, 222, 223, 224, 225, 228, 261, 291, 299, 304, 305, 307, 324, 332, 334, 344], "them": [13, 16, 29, 38, 106, 114, 116, 125, 133, 135, 222, 227, 234, 240, 242, 255, 257, 258, 288, 289, 298, 304, 305, 307, 314, 326, 338, 339, 345, 356, 357, 360, 405], "happen": [13, 16, 326], "That": [13, 16, 35, 232, 288, 339], "case": [13, 14, 16, 27, 29, 30, 33, 109, 112, 128, 131, 230, 233, 238, 239, 240, 241, 244, 245, 246, 248, 251, 254, 259, 261, 266, 278, 291, 297, 301, 324, 333, 338, 343, 344, 347], "differ": [13, 14, 15, 16, 29, 33, 38, 121, 207, 222, 224, 225, 227, 228, 229, 232, 233, 234, 235, 237, 238, 239, 242, 244, 246, 247, 248, 251, 252, 253, 254, 257, 259, 262, 264, 265, 266, 280, 282, 283, 285, 286, 287, 288, 289, 291, 293, 295, 298, 299, 300, 301, 305, 306, 307, 311, 314, 324, 329, 330, 331, 332, 333, 334, 337, 338, 340, 343, 344, 345, 347, 348, 351, 352, 355, 356, 359, 360], "same": [13, 14, 16, 20, 22, 26, 29, 30, 38, 44, 51, 53, 101, 102, 116, 135, 149, 156, 158, 230, 231, 232, 237, 238, 239, 240, 255, 291, 293, 294, 295, 297, 299, 300, 301, 305, 314, 329, 332, 333, 343, 344, 345, 346, 347, 350, 351, 355, 359], "But": [13, 16, 301], "uqwrapp": [13, 16], "instead": [13, 14, 16, 19, 35, 230, 234, 238, 241, 266, 291, 299, 300, 301, 314, 331, 333, 335, 338, 339, 342, 343, 344, 347, 352, 356], "compress": [13, 16, 69, 106, 116, 125, 135, 174, 339], "12": [13, 16, 26, 30, 32, 33, 35, 38, 46, 47, 48, 49, 50, 51, 53, 70, 92, 94, 98, 143, 151, 152, 153, 154, 155, 156, 158, 175, 197, 203, 222, 230, 234, 237, 238, 239, 241, 253, 254, 264, 266, 278, 291, 293, 334, 338, 343, 417], "send": [13, 16, 291, 360], "13": [13, 16, 26, 30, 32, 33, 51, 54, 55, 62, 143, 156, 159, 160, 167, 222, 230, 234, 237, 241, 253, 264, 266, 278, 283, 293, 294, 301, 345, 352], "transfer": [13, 16, 112, 115, 118, 131, 134, 137, 326], "invoc": [13, 16], "tacc": [13, 16, 23, 222, 223, 224, 225, 228, 288, 315, 356], "portal": [13, 16, 23, 40, 278], "field": [14, 20, 50, 51, 53, 114, 133, 155, 156, 158, 222, 223, 224, 225, 228, 229, 230, 232, 238, 239, 242, 244, 245, 246, 252, 253, 254, 257, 259, 260, 261, 262, 266, 291, 292, 295, 301, 311, 315, 318, 320, 337, 338, 339, 341, 343, 344, 347, 350, 351, 355, 405, 417], "both": [14, 22, 33, 38, 43, 44, 148, 149, 222, 223, 224, 225, 228, 229, 230, 231, 232, 238, 240, 245, 252, 253, 254, 255, 261, 266, 280, 282, 287, 288, 291, 294, 295, 300, 301, 304, 326, 330, 332, 334, 339, 341, 343, 344, 345, 352, 356, 359], "regionsl": 14, "releas": [14, 16, 34, 35, 36, 38, 220, 238, 239, 240, 246, 253, 260, 261, 262, 266, 284, 288, 289, 304, 305, 309, 312, 315, 318, 322, 357, 417], "built": [14, 16, 19, 22, 23, 26, 35, 54, 114, 117, 133, 136, 159, 217, 222, 237, 238, 239, 242, 247, 251, 252, 253, 254, 262, 264, 265, 278, 285, 286, 311, 312, 314, 335, 342, 345], "those": [14, 29, 33, 35, 39, 111, 117, 119, 130, 136, 138, 218, 219, 222, 229, 230, 232, 238, 239, 240, 244, 245, 246, 247, 248, 253, 254, 259, 261, 266, 280, 282, 284, 333, 337, 338, 339, 342, 344, 345, 350, 351, 358, 405], "have": [14, 23, 24, 29, 32, 33, 34, 35, 36, 94, 100, 108, 109, 110, 111, 112, 117, 118, 119, 121, 122, 127, 128, 129, 130, 131, 136, 137, 138, 205, 207, 208, 223, 225, 228, 230, 232, 233, 234, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 252, 253, 254, 255, 256, 257, 258, 261, 262, 264, 265, 266, 279, 280, 281, 284, 285, 288, 289, 290, 291, 294, 298, 299, 301, 304, 305, 307, 310, 313, 314, 316, 323, 326, 332, 334, 335, 338, 339, 343, 344, 345, 346, 347, 348, 352, 356, 357, 405], "limit": [14, 29, 30, 33, 42, 94, 101, 102, 105, 106, 121, 122, 124, 125, 147, 207, 208, 221, 222, 227, 229, 230, 232, 237, 238, 244, 245, 250, 251, 253, 259, 261, 262, 263, 279, 280, 285, 288, 291, 292, 299, 300, 301, 304, 307, 314, 332, 335, 338, 341, 343, 345, 352, 356, 405], "involv": [14, 19, 35, 231, 233, 237, 238, 253, 264, 279, 285, 329, 332, 333, 346], "move": [14, 22, 30, 222, 223, 224, 225, 228, 245, 266, 279, 304, 305, 306, 307, 311, 314, 360], "begin": [14, 28, 29, 230, 231, 232, 237, 261, 329, 330, 338, 345, 356], "state": [14, 19, 20, 30, 32, 42, 54, 62, 73, 100, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 141, 147, 159, 167, 178, 205, 206, 219, 222, 230, 238, 240, 241, 244, 245, 247, 252, 253, 255, 256, 257, 264, 265, 266, 278, 279, 287, 314, 332, 346, 348, 350, 353, 356, 373, 413], "being": [14, 20, 35, 231, 239, 266, 280, 291, 292, 295, 298, 317, 328, 330, 331, 335, 339, 347, 350, 351, 353, 359], "figcontext": 14, "figcontain": 14, "deisignsaf": 14, "figcomponentfront": 14, "figcomponentback": 14, "mostli": [14, 114, 133, 232], "figumle": 14, "figumlw": 14, "figumlpb": 14, "share": [14, 23, 222, 223, 224, 225, 228, 278, 301, 304, 305, 343, 345], "code": [14, 19, 23, 34, 35, 36, 58, 68, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 163, 173, 220, 221, 222, 223, 224, 225, 226, 227, 228, 237, 238, 239, 245, 246, 248, 253, 254, 261, 262, 264, 266, 280, 283, 286, 304, 307, 328, 358, 417], "bundl": [14, 314], "figumlearthquakeev": 14, "figumlwindev": 14, "figumlcommon": 14, "were": [14, 23, 26, 34, 35, 36, 38, 47, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 152, 206, 234, 237, 238, 239, 241, 244, 245, 246, 247, 252, 253, 254, 256, 259, 261, 262, 265, 266, 278, 280, 282, 283, 284, 285, 287, 291, 292, 300, 314, 317, 353, 356], "place": [14, 64, 107, 109, 111, 117, 120, 126, 128, 130, 136, 139, 169, 232, 239, 242, 243, 253, 254, 257, 281, 290, 291, 292, 295, 304, 305, 307, 326, 328, 336, 339, 345, 350, 351, 356], "simplifi": [14, 33, 222, 234, 238, 253, 280, 292, 294, 318, 356], "outsid": [14, 54, 107, 112, 117, 126, 131, 136, 159, 232, 238, 240, 253, 255, 300, 312, 347], "programm": [14, 29], "whom": 14, "envis": [14, 246, 261], "ad": [14, 35, 42, 147, 222, 223, 225, 227, 228, 246, 257, 261, 285, 290, 300, 301, 311, 313, 314, 317, 318, 319, 321, 324, 335, 339, 345, 347, 350, 353, 354, 356, 405], "new": [14, 23, 35, 222, 223, 224, 225, 227, 228, 232, 233, 234, 238, 239, 243, 244, 245, 246, 247, 248, 253, 254, 255, 258, 259, 262, 266, 281, 282, 290, 295, 296, 297, 298, 299, 305, 309, 310, 311, 312, 314, 315, 317, 318, 319, 320, 321, 322, 324, 335, 338, 339, 342, 346, 354, 356], "reduc": [14, 101, 102, 106, 117, 125, 136, 222, 223, 224, 225, 228, 230, 231, 233, 261, 264, 266, 280, 293, 301, 310, 317, 323, 333, 334, 344], "overhead": [14, 319], "compil": [14, 33, 34, 35, 36, 237, 326], "THE": [14, 29, 221, 328], "exhaust": [14, 344], "decid": [14, 222, 227, 230, 301, 341, 343, 405], "myriad": 14, "edit": [14, 23, 29, 35, 38, 145, 215, 222, 227, 239, 254, 291, 305, 307, 314, 328, 332, 350, 352, 356], "label": [14, 20, 24, 30, 238, 253, 264, 314], "suffici": [14, 109, 128, 229, 233, 242, 245, 257, 266, 345], "while": [14, 30, 32, 39, 108, 112, 115, 127, 131, 134, 230, 231, 234, 239, 242, 245, 246, 248, 251, 252, 253, 254, 257, 261, 262, 264, 265, 266, 280, 291, 293, 294, 296, 298, 301, 325, 328, 332, 333, 335, 344, 345, 346, 347, 353, 356, 358], "consist": [14, 19, 29, 51, 53, 64, 114, 117, 133, 136, 156, 158, 169, 229, 230, 231, 233, 234, 239, 241, 247, 253, 254, 256, 257, 262, 266, 280, 285, 299, 301, 314, 333, 342, 347, 356], "certain": [14, 122, 208, 222, 229, 230, 246, 248, 252, 261, 265, 266, 291, 332, 339, 356, 359], "attribut": [14, 230, 240, 241, 244, 246, 247, 248, 252, 255, 256, 257, 259, 261, 262, 264, 265, 266, 278, 282, 285, 300, 301, 321, 334, 344, 357], "relationship": [14, 101, 102, 239, 247, 262], "order": [14, 16, 17, 18, 23, 24, 39, 222, 223, 224, 225, 228, 230, 232, 233, 238, 245, 246, 248, 253, 261, 264, 285, 291, 292, 298, 300, 301, 310, 315, 317, 323, 328, 329, 330, 332, 339, 341, 343, 344, 345, 347, 352, 355, 356], "codemaincod": 14, "strip": [14, 109, 128, 238], "version": [14, 23, 29, 34, 35, 36, 140, 144, 210, 214, 217, 227, 231, 237, 238, 245, 247, 253, 257, 278, 280, 283, 288, 289, 304, 305, 307, 309, 312, 315, 318, 322, 334, 335, 356, 357, 358, 417], "deal": [14, 235], "style": [14, 87, 192, 417], "sheet": [14, 19, 46, 67, 83, 107, 126, 151, 172, 188, 239, 254, 280, 344], "analyt": [14, 222, 223, 224, 225, 228, 230, 245, 252], "pertin": 14, "int": [14, 20, 30, 231, 237, 339, 347, 358], "argc": 14, "char": 14, "argv": [14, 358], "qapplic": 14, "qstring": [14, 29], "tenant": [14, 23, 314], "storag": [14, 94, 97, 121, 202, 207, 222, 227, 241, 256, 262], "agav": [14, 23], "default": [14, 19, 24, 26, 29, 33, 35, 54, 55, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 159, 160, 169, 186, 187, 188, 189, 190, 194, 195, 196, 222, 223, 224, 225, 228, 230, 232, 233, 238, 239, 240, 245, 253, 254, 255, 264, 265, 278, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 306, 307, 315, 317, 332, 335, 338, 339, 341, 343, 344, 345, 349, 350, 351, 352, 353, 356, 360, 373, 400, 405, 414, 415], "dirnam": 14, "window": [14, 22, 23, 24, 29, 33, 34, 35, 36, 51, 53, 108, 127, 156, 158, 222, 238, 241, 245, 249, 252, 253, 254, 259, 265, 279, 280, 293, 296, 298, 299, 300, 301, 303, 304, 307, 308, 314, 324, 327, 338, 342, 356, 360], "workflowappwidget": 14, "theinputapp": 14, "workflowappee_uq": 14, "theremoteservic": 14, "mainwindowworkflowapp": 14, "setvers": 14, "0": [14, 19, 20, 23, 29, 30, 32, 33, 35, 38, 44, 45, 46, 47, 54, 55, 69, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 149, 150, 151, 152, 159, 160, 174, 206, 217, 222, 230, 231, 232, 233, 234, 237, 238, 239, 241, 245, 246, 249, 253, 254, 257, 260, 261, 264, 266, 278, 279, 280, 283, 284, 285, 286, 287, 291, 292, 293, 294, 295, 296, 297, 299, 300, 301, 304, 305, 314, 317, 318, 322, 332, 335, 338, 339, 342, 344, 345, 347, 350, 351, 352, 353, 356, 358, 405, 414, 415], "thread": [14, 75, 76, 78, 79, 87, 180, 181, 183, 184, 192], "qthread": 14, "movetothread": 14, "re": [14, 24, 222, 227, 229, 237, 238, 239, 242, 253, 257, 279, 283, 285, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 317, 326, 342, 344, 356, 360], "exec": 14, "logout": 14, "stop": [14, 307, 318, 320], "quit": [14, 105, 124, 304, 305], "mention": [14, 278, 335], "qmainwindow": 14, "menu": [14, 35, 291, 292, 293, 294, 295, 296, 298, 306, 330, 332, 333, 335, 338, 339, 348, 349, 352, 353, 355, 360], "item": [14, 19, 238, 239, 241, 244, 259, 282, 347, 360], "close": [14, 232, 234, 238, 240, 254, 255, 266, 280, 284, 291, 299, 333, 338, 344, 352, 356, 358, 360], "help": [14, 222, 230, 233, 238, 243, 247, 258, 266, 281, 285, 290, 304, 314, 316, 334, 344, 345, 352, 360], "cite": [14, 417], "qmainwindowworkflowapp": 14, "qwidget": [14, 29], "respond": [14, 24], "underwai": 14, "earthquakeeventselect": 14, "intern": [14, 231, 245, 249, 254, 262, 313, 316, 319, 323, 329, 342, 347], "fem": [14, 16, 26, 222, 223, 224, 225, 228, 230, 232, 291, 292, 293, 295, 296, 297, 298, 299, 300, 301, 304, 305, 311, 317, 324, 330, 331, 334, 336, 339, 341, 342, 343, 344, 347, 354, 356, 360], "randomvariablecontain": 14, "statu": [14, 23, 29, 222, 223, 224, 225, 226, 227, 228, 242, 257, 332, 356, 360], "retriev": [14, 242, 257, 299, 352], "old": [14, 87, 192, 238, 239, 304, 307, 317], "login": [14, 242, 257, 293, 360], "credenti": [14, 352], "ci": [14, 23, 35, 237, 259, 261, 262, 266, 356, 360], "switch": [14, 33, 296, 297, 317, 330, 339], "amazon": 14, "ec": 14, "ibm": [14, 222], "azur": 14, "elsewher": 14, "eu": 14, "similar": [14, 17, 23, 30, 33, 35, 104, 106, 111, 113, 123, 125, 130, 132, 222, 224, 225, 227, 230, 234, 238, 239, 244, 245, 253, 259, 262, 264, 266, 282, 295, 301, 332, 333, 356, 357], "construct": [14, 19, 30, 33, 47, 50, 51, 53, 57, 58, 59, 62, 65, 66, 67, 68, 69, 70, 72, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 100, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 152, 155, 156, 158, 162, 163, 164, 167, 170, 171, 172, 173, 174, 175, 177, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 205, 206, 207, 208, 209, 222, 223, 224, 225, 228, 232, 235, 238, 239, 240, 242, 244, 245, 246, 247, 248, 253, 254, 259, 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252, 253, 254, 255, 258, 260, 261, 262, 265, 266, 284, 296, 300, 302, 305, 334, 335, 339, 342, 347, 352], "occur": [16, 54, 101, 102, 104, 123, 159, 232, 233, 234, 237, 279, 280, 284, 285, 326, 331, 356], "preprocessor": 16, "better": [17, 101, 102, 233, 242, 251, 266, 280, 332, 346, 356], "again": [17, 35, 232, 239, 254, 262, 295, 301, 307, 346, 347], "although": [17, 121, 122, 207, 208, 239, 266, 297], "free": [17, 30, 35, 222, 223, 224, 225, 228, 233, 237, 298, 315, 317, 356], "arrang": 17, "indic": [17, 19, 20, 23, 30, 38, 116, 135, 222, 223, 224, 225, 228, 234, 235, 238, 239, 243, 252, 253, 254, 258, 264, 265, 266, 279, 281, 290, 291, 307, 315, 327, 332, 334, 347, 356], "instanc": [18, 32, 34, 35, 36, 233, 234, 239, 240, 245, 252, 254, 255, 282, 314, 328, 333, 342, 352], "prepar": [18, 22, 25, 222, 227, 229, 230, 292, 350, 351, 356, 357], "standard": [18, 20, 28, 29, 30, 32, 33, 38, 39, 42, 50, 53, 87, 94, 97, 147, 155, 158, 192, 202, 222, 224, 225, 227, 230, 231, 232, 233, 234, 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119, 147, 206, 230, 248, 249, 251, 266, 278, 291, 292, 294, 295, 299, 301, 331, 339, 342, 347, 350, 351, 352, 356, 357], "gm_file": [19, 30], "aggreg": [20, 22, 23, 26, 28, 30, 32, 233, 235, 244, 259, 280, 315, 344, 345, 405], "hdf": [20, 23, 242, 257, 296], "archiv": [20, 23, 26, 229, 230, 245, 246, 261, 326], "floor": [20, 30, 32, 38, 43, 53, 58, 71, 73, 75, 76, 77, 78, 79, 94, 107, 109, 110, 111, 117, 118, 119, 121, 126, 128, 129, 130, 136, 137, 138, 148, 158, 163, 176, 178, 180, 181, 182, 183, 184, 207, 222, 227, 230, 237, 238, 240, 241, 253, 255, 278, 279, 280, 286, 291, 292, 293, 294, 295, 299, 301, 309, 314, 322, 339, 345, 354, 358], "pfa": [20, 30, 33, 38, 292, 295, 299, 301, 358], "interstori": [20, 30, 64, 169, 314, 358], "drift": [20, 30, 38, 41, 53, 54, 55, 64, 112, 131, 140, 146, 158, 159, 160, 169, 210, 222, 227, 230, 244, 259, 279, 286, 287, 292, 293, 295, 296, 298, 299, 301, 309, 314, 322, 339, 345, 354, 358], "pid": [20, 30, 38, 292, 295, 299, 301, 358], "displac": [20, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 128, 136, 206, 222, 232, 279, 291, 292, 296, 298, 299, 301, 309, 335, 339, 354, 358], "roof": [20, 58, 61, 107, 108, 109, 110, 111, 114, 117, 118, 126, 127, 128, 129, 130, 133, 136, 137, 163, 166, 222, 238, 239, 240, 241, 252, 253, 254, 255, 256, 262, 264, 265, 266, 279, 291, 292, 299, 301, 339], "prd": [20, 299, 301], "imasedp": [20, 26, 32, 242, 257, 318, 320], "loc": [20, 30, 32, 33, 38, 314], "denot": [20, 230, 231, 300, 320, 347, 354], "otherwis": [20, 29, 221, 231, 234, 279, 299, 300, 336, 338, 339, 344, 348], "dir": [20, 26, 30, 32, 33, 299, 301, 326, 339, 348, 358], "z": [20, 30, 230, 233, 234, 286, 304, 307, 339, 344, 353, 356], "stat": [20, 30, 32, 33, 38, 230, 345], "statist": [20, 30, 32, 33, 38, 222, 223, 228, 230, 231, 234, 252, 253, 257, 265, 266, 279, 280, 292, 298, 300, 301, 315, 333, 334, 341, 342, 343, 345, 356, 359], "report": [20, 23, 30, 32, 33, 35, 223, 225, 228, 239, 245, 246, 261, 262, 266, 280, 343, 345, 417], "median": [20, 30, 32, 33, 53, 54, 55, 64, 67, 81, 82, 83, 84, 85, 89, 90, 91, 94, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 158, 159, 160, 169, 172, 186, 187, 188, 189, 190, 194, 195, 196, 206, 234, 266, 297, 300, 336, 339], "entri": [20, 239, 254, 257, 291, 292, 295, 318, 320, 329, 330, 337, 338, 339, 347, 358], "regionalmap": [20, 26, 28, 30, 32, 33], "130": [20, 30, 253, 264, 266, 301, 417], "996": [20, 30], "478197571": 20, "145": [20, 30, 245, 342, 352], "494": [20, 30], "080967514": 20, "264": [20, 356], "518": 20, "152547475": 20, "276": [20, 30, 241], "529": 20, "27654027": 20, "00182557": 20, "151875634": 20, "00190603": 20, "277128181": 20, "collaps": [20, 30, 32, 104, 106, 116, 123, 125, 135, 222, 227, 279, 280, 356], "ds": [20, 30, 32, 257, 266, 280, 293, 352], "likelihood": [20, 30, 32, 101, 102, 222, 223, 224, 225, 227, 228, 230, 231, 241, 245, 252, 256, 265, 315, 317, 329, 373, 413], "five": [20, 30, 97, 202, 239, 242, 246, 247, 251, 254, 261, 266, 294, 301, 338], "1_1": [20, 30, 32], "ds1": [20, 42, 147, 279, 280, 314], "aesthet": 20, "2_1": [20, 30, 32], "ds2": [20, 44, 149, 259, 262, 266, 279], "mild": [20, 230], "3_1": [20, 30, 32], "ds3": [20, 42, 44, 54, 147, 149, 159, 279, 280], "moder": [20, 101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 126, 127, 128, 129, 130, 131, 132, 133, 134, 137, 138, 206, 245, 257, 279, 280, 286], "4_1": [20, 30, 32], "ds4": [20, 44, 149, 279, 280], "addition": [20, 29, 222, 230, 237, 257, 299, 301, 320, 334, 338, 341, 343, 344, 345, 352, 355, 357, 405], "abbrevi": [20, 238, 358, 417], "ns": [20, 30, 280, 334], "nonstructur": [20, 112, 121, 122, 131, 207, 208, 227, 232], "nsa": [20, 30, 140, 210], "nsd": [20, 30, 140, 210], "across": [20, 28, 29, 222, 230, 238, 245, 247, 253, 262, 279, 280, 314, 333, 347, 359], "row": [20, 33, 38, 237, 238, 253, 291, 294, 305, 329, 330, 342, 344, 347], "sum": [20, 44, 149, 230, 233, 241, 329, 330, 331, 335, 338, 339, 345, 347], "total": [20, 33, 67, 97, 172, 202, 230, 231, 233, 237, 238, 241, 242, 245, 247, 256, 257, 262, 278, 279, 280, 285, 299, 301, 315, 331, 334, 341, 343, 344, 345, 347, 352, 356, 357], "comp_typ": [20, 30, 32], "dsg_d": [20, 30, 32], "4_2": [20, 30], "repair": [20, 30, 32, 46, 54, 59, 68, 87, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 158, 159, 160, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 206, 207, 208, 209, 211, 212, 213, 222, 227, 237, 239, 262, 279, 280, 284, 312, 314], "entir": [20, 231, 233, 238, 241, 242, 244, 245, 247, 251, 253, 257, 264, 279, 280, 353], "mean": [20, 30, 32, 38, 39, 230, 231, 233, 234, 238, 239, 245, 253, 264, 266, 280, 283, 291, 292, 293, 294, 295, 298, 299, 300, 311, 315, 317, 326, 332, 333, 335, 338, 339, 341, 343, 345, 347, 352, 354, 356, 357, 359, 405], "10th": 20, "percentil": [20, 266], "50th": 20, "90th": 20, "currenc": 20, "equal": [20, 39, 46, 54, 55, 94, 151, 159, 160, 230, 231, 234, 238, 239, 245, 254, 278, 298, 329, 330, 331, 333, 344, 347, 356], "percentag": [20, 238, 239, 241, 253], "impract": [20, 30, 32, 346], "___": 20, "injuri": [20, 30, 222, 227, 252, 265, 287], "project": [20, 23, 29, 34, 36, 223, 225, 228, 234, 244, 245, 246, 247, 254, 257, 261, 262, 266, 283, 285, 309, 311, 314, 316, 353], "sev1": [20, 30], "sev2": [20, 30], "sev3": [20, 30], "sev4": [20, 30], "std": [20, 30, 32, 38, 339], "90": [20, 30, 32, 33, 47, 152, 241, 245, 247, 266, 283, 285, 286, 300, 315], "056575": 20, "034084051": 20, "0138": 20, "08": [20, 30, 234, 238, 241, 260, 266, 339], "086525": 20, "000725": [20, 30], "003625": [20, 30], "05585": 20, "005": [20, 30, 32, 339], "027": [20, 30], "082416667": 20, "0544": 20, "00145": [20, 30], "00725": 20, "29": [20, 30, 32, 94, 234, 237, 238, 241, 264, 266, 315], "58": [20, 30, 33, 145, 215, 234, 241, 253, 280, 312, 314], "87": 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118, 119, 131, 137, 180, 181, 183, 184, 187, 206, 227, 230, 237, 238, 239, 245, 253, 257, 266, 279, 280, 300, 301, 305, 319, 338, 350, 351, 356], "debug": [22, 24, 29], "larger": [22, 241, 244, 259, 279, 280, 300, 333, 334, 343, 344, 356], "instal": [22, 23, 34, 36, 50, 53, 57, 58, 59, 64, 68, 69, 70, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 155, 158, 162, 163, 164, 169, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 222, 223, 224, 225, 228, 239, 254, 257, 290, 326, 327, 356, 417], "rwhale": [22, 23, 25, 26, 30, 32, 237, 278, 284, 326], "zip": [22, 23, 30, 32, 237, 238, 242, 245, 257, 280, 304, 305, 306], "you": [22, 23, 24, 29, 34, 35, 36, 223, 225, 228, 230, 242, 243, 246, 257, 258, 261, 281, 288, 289, 290, 291, 293, 294, 295, 299, 304, 305, 306, 307, 308, 310, 312, 313, 314, 316, 319, 323, 326, 327, 345, 356, 359, 360], "input_data_eq": [22, 23], "templat": [22, 23, 33, 246, 248, 316, 328, 345], "rwhale_config_eq": [22, 30], "remotedir": 22, "desir": [22, 222, 223, 224, 225, 226, 227, 228, 230, 234, 242, 253, 257, 297, 300, 331, 347, 350, 351, 353, 355, 356], "initi": [22, 23, 24, 26, 29, 30, 32, 33, 35, 38, 106, 116, 125, 135, 230, 231, 232, 238, 239, 240, 241, 245, 246, 247, 250, 253, 254, 255, 261, 262, 263, 280, 284, 285, 286, 287, 301, 314, 320, 321, 326, 327, 329, 330, 331, 332, 334, 335, 339, 344, 345, 346, 350, 351, 356, 358, 360, 405, 415], "rwhale_config": [22, 26], "registri": [22, 26, 30, 32], "referencedir": [22, 30, 32], "edp_": 22, "_": [22, 35, 222, 223, 224, 225, 228, 230, 231, 234, 242, 257, 260, 291, 304, 305, 307, 314, 344, 345, 356, 358, 360], "dm_": 22, "dv_": 22, "respect": [22, 33, 222, 230, 231, 232, 233, 234, 238, 239, 244, 245, 253, 257, 259, 266, 280, 282, 292, 298, 299, 301, 329, 330, 331, 345, 347, 356], "workdir": [22, 33, 222, 326], "err": [22, 23, 24, 26, 326, 405], "dl_summari": 22, "log": [22, 23, 24, 25, 28, 222, 223, 224, 225, 227, 228, 237, 294, 299, 300, 301, 315, 317, 326, 336, 339, 341, 342, 343, 345, 352, 360, 373, 405, 413], "txt": [22, 26, 100, 205, 257, 297, 344, 345, 350, 351], "There": [23, 33, 101, 102, 104, 123, 232, 244, 259, 280, 282, 294, 296, 304, 307, 310, 314, 339, 345, 347, 358, 359, 405], "wai": [23, 29, 33, 35, 221, 222, 230, 241, 245, 254, 256, 331, 339, 356], "notebook": [23, 222, 257, 279], "ubuntu": 23, "rwhale_config_remot": 23, "my": [23, 35, 304], "createlaunchertask": 23, "run_rwhal": 23, "ipynb": [23, 257], "On": [23, 35, 230, 237, 253, 300, 301, 304, 307, 331, 333, 343, 356], "appear": [23, 24, 42, 147, 251, 304, 307, 339, 350, 351, 353], "click": [23, 35, 38, 230, 233, 237, 242, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 306, 307, 315, 317, 326, 338, 339, 342, 343, 350, 351, 352, 356, 360], "taken": [23, 233, 239, 247, 252, 287, 301, 333, 352, 357], "frontera": [23, 242, 246, 257, 261, 288, 315, 356], "cell": [23, 48, 49, 153, 154, 257, 291, 339, 356], "navig": [23, 24, 35, 293, 294, 295, 296, 297, 298, 306, 307], "workspac": [23, 237], "bar": [23, 38, 206, 207, 208, 209, 231, 234, 279, 356], "newest": 23, "oldest": 23, "info": [23, 222, 224, 225, 299, 336, 339, 345], "realiz": [23, 26, 30, 32, 222, 227, 229, 230, 231, 233, 234, 252, 257, 264, 265, 279, 280, 286, 287, 289, 292, 296, 297, 299, 300, 311, 312, 326, 328, 333, 336, 338, 339, 342, 343, 345, 352, 354, 355, 357], "hd5": 23, "per": [23, 30, 39, 41, 42, 43, 44, 47, 50, 53, 57, 67, 73, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 100, 146, 147, 148, 149, 152, 155, 158, 162, 172, 178, 186, 187, 188, 189, 190, 192, 194, 195, 196, 205, 222, 224, 225, 227, 230, 238, 239, 241, 242, 245, 257, 266, 278, 291, 299, 301, 314, 332, 339, 341, 343, 347, 352, 353, 405], "launcher": [23, 26], "subsystem": 23, "pleas": [23, 30, 32, 42, 147, 233, 242, 243, 246, 255, 257, 258, 259, 261, 266, 281, 290, 293, 294, 299, 300, 320, 323, 326, 331, 332, 334, 336, 339, 344, 345, 352, 355], "ensur": [23, 30, 32, 35, 232, 238, 239, 241, 244, 247, 248, 253, 254, 256, 259, 261, 282, 288, 305, 306, 307, 314, 327, 341, 343, 346, 347, 358], "pip": [23, 35, 304, 305], "Or": 23, "clone": [23, 34, 35, 36], "com": [23, 35, 100, 205, 230, 238, 239, 253, 278, 342, 417], "ng": 23, "cd": [23, 35], "upgrad": [23, 262, 307, 318], "host": [23, 222, 223, 224, 225, 228, 246, 261], "ask": [23, 246, 253, 261, 305, 326, 352, 355], "agre": 23, "final": [23, 35, 36, 230, 231, 233, 237, 238, 239, 266, 291, 304, 326, 332, 352], "enter": [23, 38, 58, 73, 75, 76, 77, 78, 79, 163, 178, 180, 181, 182, 183, 184, 238, 239, 291, 292, 295, 298, 304, 305, 307, 338, 339, 350, 351, 352, 353, 355, 356, 357], "usernam": 23, "password": [23, 293, 294, 299, 352], "auth": 23, "init": [23, 238, 239], "prompt": [23, 35, 339], "tenant_nam": 23, "keep": [23, 231, 280, 291, 292, 295, 300, 314, 345, 350], "registry_url": 23, "index": [23, 33, 231, 235, 298, 301, 334, 341, 343, 344, 347], "docker": 23, "io": [23, 35], "git_usernam": 23, "git_token": 23, "account": [23, 39, 222, 224, 225, 230, 231, 242, 245, 252, 257, 279, 287, 289, 292, 293, 294, 298, 299, 300, 334, 336, 339, 344, 352, 356, 357, 360], "token": 23, "accept": [23, 29, 231, 264, 291, 328, 332, 344, 346], "polici": [23, 29, 280], "found": [23, 26, 33, 39, 220, 229, 230, 234, 238, 242, 253, 257, 266, 279, 298, 299, 301, 306, 307, 328, 333, 339, 352, 356], "utexa": [23, 356], "usag": [23, 222, 223, 224, 225, 228, 247, 285, 302, 307], "abid": 23, "aup": 23, "conduct": [23, 230, 233, 238, 241, 242, 244, 245, 251, 253, 257, 259, 261, 264, 266, 298, 335, 352, 356, 357], "coc": 23, "improv": [23, 101, 102, 121, 122, 207, 208, 222, 230, 233, 237, 240, 242, 244, 246, 253, 255, 259, 261, 264, 266, 282, 285, 301, 311, 314, 316, 317, 318, 319, 320, 321, 324, 344, 346, 354, 356], "abil": [23, 33, 222, 223, 224, 225, 228, 244, 245, 259, 282, 314, 323], "support": [23, 27, 28, 29, 69, 83, 101, 102, 109, 110, 111, 117, 128, 129, 130, 136, 143, 174, 188, 218, 219, 230, 237, 238, 241, 244, 245, 253, 256, 259, 260, 279, 282, 284, 288, 292, 301, 312, 313, 314, 315, 317, 319, 320, 321, 323, 324, 338, 341, 343, 345, 347, 352, 353, 356, 358, 405], "like": [23, 34, 36, 104, 108, 115, 123, 127, 134, 222, 223, 225, 228, 234, 238, 239, 240, 245, 252, 254, 255, 257, 265, 266, 278, 280, 284, 288, 289, 291, 295, 296, 299, 300, 301, 304, 306, 307, 311, 345, 352, 354, 356, 358, 417], "ip": [23, 69, 174], "address": [23, 32, 222, 237, 238, 239, 253, 259, 264, 304, 305, 324], "funder": 23, "stakehold": [23, 222], "consent": 23, "url": [23, 237, 417], "3dem": 23, "prod": 23, "public": [23, 29, 237, 262, 266, 278, 280, 304, 305, 314], "agaveapi": 23, "co": 23, "araport": 23, "iplantc": 23, "cyvers": 23, "scienc": [23, 218, 222, 223, 224, 225, 228, 239, 244, 245, 249, 259, 282, 284, 353, 417], "irec": 23, "ireceptor": 23, "sd2e": 23, "sgci": 23, "gatewai": 23, "institut": [23, 206, 207, 208, 209, 260, 261, 262, 417], "vdjserver": 23, "vdj": 23, "taccus": 23, "r2d_test_run": 23, "chang": [23, 30, 35, 38, 44, 149, 233, 234, 238, 239, 241, 246, 248, 253, 254, 261, 265, 291, 292, 295, 300, 304, 305, 310, 311, 313, 314, 316, 317, 319, 321, 323, 328, 331, 335, 339, 347, 350, 356, 359], "vim": 23, "editor": [23, 29], "ctrl": [23, 299, 300, 301], "exit": [23, 304, 305, 307, 360], "wq": 23, "f": [23, 44, 46, 69, 75, 76, 77, 78, 79, 83, 87, 100, 149, 151, 174, 180, 181, 182, 183, 184, 188, 192, 205, 230, 238, 253, 278, 284, 329, 330, 332, 338, 339, 345, 356, 417], "valid": [23, 39, 222, 223, 224, 225, 228, 230, 233, 234, 238, 239, 242, 244, 253, 254, 257, 259, 261, 262, 289, 291, 297, 299, 301, 317, 338, 339, 345, 358, 405, 417], "mail": 23, "alert": 23, "track": [23, 62, 66, 141, 167, 171, 222, 245, 246, 252, 260, 261, 262, 313, 316, 318, 319, 320, 323], "progress": [23, 222, 223, 224, 225, 228, 231, 241, 247, 262, 285, 356], "hexadecim": 23, "check": [23, 24, 30, 35, 230, 240, 242, 246, 255, 257, 261, 301, 304, 305, 306, 307, 317, 326, 338, 341, 342, 343, 345, 348, 405], "particular": [23, 24, 25, 27, 28, 29, 221, 230, 239, 264, 301, 328, 329, 332, 333, 334, 339, 343, 344, 352, 353, 357], "doe": [24, 29, 32, 41, 42, 43, 46, 146, 147, 148, 151, 229, 234, 235, 238, 244, 245, 250, 251, 259, 266, 291, 292, 300, 304, 335, 336, 339, 343, 345, 350, 351, 352, 356, 357, 405], "successfulli": [24, 26, 27, 242, 257, 301, 326, 352, 357, 359], "recommend": [24, 35, 94, 218, 219, 229, 238, 239, 240, 254, 255, 284, 292, 299, 300, 304, 305, 306, 307, 314, 333, 338, 344, 345, 350, 351, 352, 356], "fail": [24, 35, 222, 224, 225, 237, 262, 279, 299, 300, 304, 306, 307, 326, 331, 332, 338, 415], "verifi": [24, 38, 39, 247, 251, 262, 264, 304, 307, 326], "correct": [24, 39, 40, 232, 237, 238, 266, 301, 304, 307, 326, 328], "applicationdata": [24, 30, 32, 33], "incorrect": [24, 326], "serial": [24, 345], "mistak": 24, "unclos": 24, "bracket": [24, 94, 323], "indent": [24, 29], "caus": [24, 29, 33, 55, 58, 67, 122, 160, 163, 172, 208, 221, 240, 255, 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315, 317, 319, 324, 335, 339, 345, 348], "match": [25, 30, 44, 149, 222, 224, 225, 229, 230, 233, 237, 238, 245, 253, 259, 296, 299, 300, 301, 314, 329, 330, 339, 344, 345, 346, 347, 352, 356], "carri": [26, 35, 234, 237, 241, 356], "termin": [26, 30, 32, 34, 36, 86, 191, 304, 305, 307, 326, 331, 345, 405], "reproduc": [26, 29, 39, 221, 230, 237, 293, 299, 300, 301, 333, 341, 343, 346, 347, 356, 373, 413], "explain": [26, 257, 264, 266, 301, 328, 344, 346, 347, 356], "statement": 26, "success": [26, 29, 34, 35, 36, 38, 253, 307, 359], "16": [26, 30, 32, 33, 35, 45, 46, 48, 49, 50, 51, 53, 70, 94, 143, 150, 151, 153, 154, 155, 156, 158, 175, 222, 233, 234, 238, 239, 241, 245, 249, 253, 262, 264, 266, 293, 294, 300, 304, 339, 352], "62": [26, 30, 32, 33, 234, 241, 339], "64": [26, 238, 241, 280, 304, 305, 307], "85": [26, 230, 237, 238, 241, 245, 251, 253, 262, 339, 356], "skip": [26, 28, 291, 292, 295], "exclud": [26, 28, 58, 163, 206, 207, 208, 209, 238, 253, 298, 344], "93": [26, 30, 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114, 115, 116, 117, 118, 119, 147, 205, 206, 238, 245, 253, 294, 299, 314, 332, 339], "scbf": [42, 147], "041b": [42, 44, 47, 83, 147, 149, 152, 188], "041c": [42, 147], "042a": [42, 44, 47, 87, 147, 149, 152, 192], "042b": [42, 44, 47, 147, 149, 152], "042c": [42, 147], "043a": [42, 44, 147, 149], "043b": [42, 44, 147, 149], "043c": [42, 147], "051a": [42, 44, 147, 149], "ordinari": [42, 52, 147, 157, 230], "compact": [42, 147], "051b": [42, 44, 147, 149], "051c": [42, 147], "052a": [42, 44, 147, 149], "052b": [42, 44, 147, 149], "052c": [42, 147], "053a": [42, 44, 87, 147, 149, 192], "053b": [42, 44, 147, 149], "053c": [42, 147], "061a": [42, 43, 44, 147, 148, 149], "ductil": [42, 44, 104, 106, 109, 123, 125, 128, 147, 149], "slender": [42, 46, 147, 151], "ocbf": [42, 147], "061b": [42, 43, 44, 147, 148, 149], "061c": [42, 147], "062a": [42, 43, 44, 147, 148, 149], "062b": [42, 43, 44, 147, 148, 149], "062c": [42, 147], "063a": [42, 44, 87, 147, 149, 192], "063b": [42, 44, 147, 149], 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332, 344, 345, 353, 417], "vn": [44, 149], "imf": [44, 149], "failur": [44, 67, 83, 87, 101, 102, 104, 106, 115, 116, 123, 125, 134, 135, 140, 142, 143, 149, 172, 188, 192, 222, 224, 225, 242, 257, 279, 306, 318, 326, 332, 415, 417], "3agf": [44, 149], "omf": [44, 149], "veq": [44, 149], "6agf": [44, 149], "axial": [44, 149], "b1041": [44, 149], "asce6": [44, 149], "081a": [44, 149], "asce41": [44, 149], "igh": [44, 149], "7i": [44, 149], "081b": [44, 149], "082a": [44, 149], "082b": [44, 149], "083a": [44, 149], "083b": [44, 149], "091a": [44, 149], "tbd": [44, 149], "061": [44, 46, 54, 149, 151, 159], "091b": [44, 149], "092a": [44, 149], "092b": [44, 149], "093a": [44, 149], "093b": [44, 149], "102a": [44, 83, 94, 149, 188], "102b": [44, 83, 94, 149, 188], "103a": [44, 83, 94, 149, 188], "103b": [44, 83, 94, 149, 188], "112a": [44, 94, 149], "112b": [44, 94, 149], "113a": [44, 149], "113b": [44, 149], "121a": [44, 149], "121b": [44, 149], "122a": [44, 149], "122b": [44, 149], 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"less": [46, 75, 76, 78, 79, 83, 117, 136, 143, 151, 180, 181, 183, 184, 188, 232, 234, 239, 245, 247, 253, 254, 255, 257, 264, 266, 280, 291, 356], "curtain": [46, 56, 112, 131, 151, 161], "orthogon": [46, 151, 234, 238, 253, 295, 339, 417], "psi": [46, 151], "shorten": [46, 151], "pact": [46, 54, 55, 64, 81, 82, 83, 84, 85, 89, 90, 91, 94, 151, 159, 160, 169, 186, 187, 188, 189, 190, 194, 195, 196], "andrew": [46, 151, 246, 261], "whittak": [46, 151], "sf": [46, 48, 49, 50, 51, 53, 54, 55, 57, 67, 68, 69, 94, 151, 153, 154, 155, 156, 158, 159, 160, 162, 172, 173, 174, 278], "900": [46, 151, 238], "013": [46, 48, 49, 57, 94, 151, 153, 154, 162], "023": [46, 48, 54, 94, 151, 153, 159], "rise": [46, 104, 105, 106, 109, 110, 111, 112, 113, 115, 116, 117, 123, 124, 125, 128, 129, 130, 131, 132, 134, 135, 136, 151, 222, 237, 247, 253, 262, 285, 322, 323, 324], "flang": [46, 151], "033": [46, 54, 55, 151, 159, 160], "053": [46, 54, 55, 151, 159, 160], "062": [46, 151], "063": [46, 151, 356], "071": [46, 54, 151, 159], "072": [46, 54, 151, 159, 262], "073": [46, 151], "081": [46, 54, 151, 159], "082": [46, 54, 151, 159], "083": [46, 54, 151, 159], "091": [46, 54, 151, 159], "greater": [46, 48, 49, 76, 78, 79, 83, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 131, 138, 143, 151, 153, 154, 181, 183, 184, 188, 206, 230, 234, 239, 242, 247, 254, 257, 264, 344, 345, 405], "092": [46, 151], "112": [46, 151, 230, 237, 266], "vg": [47, 152], "vo": [47, 152], "reinf": [47, 152], "qualiti": [47, 50, 51, 53, 57, 58, 59, 62, 64, 66, 67, 68, 69, 70, 73, 75, 76, 77, 78, 79, 81, 82, 83, 84, 85, 87, 89, 90, 91, 94, 97, 152, 155, 156, 158, 162, 163, 164, 167, 169, 171, 172, 173, 174, 175, 178, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 194, 195, 196, 202, 230, 238, 239, 240, 253, 254, 255, 301], "56": [47, 94, 152, 238, 241, 253, 339], "63": [47, 152, 234, 241], "89": [47, 55, 152, 160, 237, 238, 241, 253], "can3": [47, 152], "a23": [47, 152], "m84": [47, 152], "mc": [47, 104, 105, 107, 108, 109, 110, 111, 112, 113, 114, 115, 118, 119, 121, 123, 124, 126, 127, 128, 129, 130, 131, 132, 133, 134, 137, 138, 152, 230, 309, 315, 318, 320, 322, 332, 343, 344], "tension": [47, 92, 114, 133, 152, 197], "ibc": [47, 152, 239, 262, 266, 352], "judgment": [47, 101, 102, 152, 238, 239, 240, 253, 254, 255], "lack": [47, 152, 234, 266, 326], "drop": [47, 83, 87, 152, 188, 192, 261, 291, 292, 314, 330, 332, 333, 338, 339, 349, 352, 355, 360], "capit": [47, 152, 314], "specimen": [47, 55, 152, 160, 231], "partial": [48, 62, 66, 104, 112, 118, 123, 131, 137, 153, 167, 171, 230, 279], "grout": [48, 49, 153, 154], "domin": [48, 49, 153, 154, 230, 234, 238, 247, 253, 262, 266, 284, 285, 334, 344], "foot": [48, 67, 101, 102, 153, 172, 238, 241, 247], "tall": [48, 49, 51, 53, 59, 94, 97, 153, 154, 156, 158, 164, 202, 244, 247, 259, 279, 280, 282, 285], "benson": [48, 49, 153, 154], "shing": [48, 49, 153, 154], "225": [48, 49, 90, 153, 154, 195], "004": [48, 49, 153, 154, 339], "014": [48, 49, 57, 153, 154, 162], "024": [48, 153, 339], "t": [49, 94, 154, 230, 231, 232, 233, 234, 239, 241, 245, 247, 254, 259, 262, 266, 279, 291, 299, 335, 352, 356, 360, 417], "o12": [49, 154], "sheath": [50, 51, 53, 110, 117, 118, 119, 129, 136, 137, 138, 155, 156, 158, 241, 253, 264], "interior": [50, 53, 100, 110, 111, 117, 118, 129, 130, 136, 137, 155, 158, 205, 239, 241, 254, 266, 294, 339], "gypsum": [50, 51, 53, 62, 66, 118, 137, 155, 156, 158, 167, 171, 279, 280], "mil": [50, 53, 155, 158], "osb": [50, 51, 53, 155, 156, 158], "plywood": [50, 53, 107, 110, 117, 118, 119, 126, 129, 136, 137, 138, 155, 158, 279], "overturn": [50, 53, 105, 124, 155, 158, 279], "restraint": [50, 53, 81, 82, 83, 84, 85, 89, 90, 91, 94, 155, 158, 186, 187, 188, 189, 190, 194, 195, 196], "aisi": [50, 53, 155, 158], "screw": [50, 53, 155, 158], "oc": [50, 53, 155, 158], "perimet": [50, 53, 110, 117, 129, 136, 155, 158, 239, 254], "ew": [50, 53, 155, 158], 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53, 156, 158, 239, 254, 264], "nail": [51, 53, 156, 158, 238, 239, 253, 254, 264, 266], "df": [51, 53, 156, 158], "2x4": [51, 53, 156, 158], "stud": [51, 53, 62, 118, 137, 156, 158, 167, 240, 255, 279], "feet": [51, 53, 87, 118, 119, 137, 138, 156, 158, 192, 238, 239, 241, 253, 339], "door": [51, 53, 108, 127, 156, 158, 238, 239, 241, 253, 262, 279, 280], "andr": [51, 53, 156, 158], "filiatrault": [51, 53, 156, 158], "chop": [51, 53, 156, 158], "strand": [51, 53, 156, 158], "fiber": [51, 53, 156, 158, 301], "wire": [51, 53, 69, 83, 156, 158, 174, 188], "mesh": [51, 53, 156, 158, 222, 224, 225, 230, 245, 292, 324], "fasten": [51, 53, 156, 158], "stapl": [51, 53, 156, 158], "let": [51, 53, 156, 158, 230, 231, 237, 293, 294, 299, 300, 301, 312], "sill": [51, 53, 156, 158, 234, 279], "opposit": [51, 53, 156, 158], "1x": [51, 53, 156, 158], "2x": [51, 53, 156, 158], "inclin": [51, 53, 156, 158], "recess": [51, 53, 156, 158], "lumber": [51, 53, 118, 137, 156, 158], "x100": [51, 62, 66, 156, 167, 171, 238, 253], "c1011": [51, 156], "lf": [51, 53, 59, 62, 66, 75, 76, 77, 78, 79, 83, 87, 97, 101, 102, 140, 156, 158, 164, 167, 171, 180, 181, 182, 183, 184, 188, 192, 202, 210, 230, 301], "rc": [52, 157], "composit": [52, 67, 106, 115, 116, 125, 134, 135, 157, 172], "shearwal": [52, 157], "slab": [52, 109, 128, 157, 240, 241, 255], "masonri": [52, 60, 107, 112, 118, 120, 126, 131, 137, 139, 157, 165, 222, 238, 247, 251, 253, 278, 279, 280, 285], "cold": [52, 53, 80, 157, 158, 185], "light": [52, 53, 69, 71, 105, 108, 120, 121, 124, 127, 139, 141, 157, 158, 174, 176, 206, 207, 208, 209, 239, 266, 279, 356], "b1061": [53, 158], "b1071": [53, 158], "201a": [53, 158], "precast": [53, 64, 112, 120, 131, 139, 158, 169], "plane": [53, 55, 108, 116, 127, 135, 158, 160, 238, 253, 295, 356], "deform": [53, 104, 123, 158, 222, 232, 318, 321], "x13": [53, 158], "volum": [53, 83, 100, 158, 188, 205, 330], "201b": [53, 158], "anchorag": [53, 81, 82, 83, 84, 85, 89, 90, 91, 107, 108, 121, 122, 126, 127, 158, 186, 187, 188, 189, 190, 194, 195, 196, 207, 208, 262, 279], "capac": [53, 81, 82, 83, 84, 85, 89, 90, 91, 109, 112, 115, 128, 131, 134, 158, 186, 187, 188, 189, 190, 194, 195, 196, 247, 261, 262, 285, 286], "midris": [54, 159], "stick": [54, 159], "monolith": [54, 55, 64, 159, 160, 169], "lamin": [54, 55, 119, 138, 159, 160], "glass": [54, 55, 94, 159, 160, 238, 239, 254, 279, 304], "insul": [54, 55, 159, 160, 241], "dual": [54, 55, 115, 134, 159, 160], "pane": [54, 55, 159, 160, 279], "asymmetr": [54, 159], "unequ": [54, 159], "igu": [54, 55, 159, 160], "anneal": [54, 55, 159, 160], "mm": [54, 55, 159, 160], "inner": [54, 55, 159, 160], "outer": [54, 55, 159, 160, 239], "lam": [54, 55, 119, 138, 159, 160], "030": [54, 55, 159, 160], "pvb": [54, 55, 159, 160], "clearanc": [54, 55, 159, 160], "sealant": [54, 55, 159, 160], "dry": [54, 55, 67, 159, 160, 172, 245], "ssg": [54, 159], "wet": [54, 55, 75, 76, 77, 78, 79, 159, 160, 180, 181, 182, 183, 184, 245], 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160], "combin": [55, 81, 82, 83, 84, 85, 89, 90, 91, 114, 133, 160, 186, 187, 188, 189, 190, 194, 195, 196, 222, 230, 232, 241, 247, 251, 252, 256, 262, 265, 280, 292, 314, 329, 332, 352, 353, 356], "short": [55, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 160, 206, 237, 238, 239, 304, 307], "crack": [55, 106, 116, 125, 135, 160, 279, 280], "055": [55, 160], "056": [55, 160], "82": [55, 160, 238, 241], "storefront": [56, 161], "tile": [57, 66, 67, 69, 87, 162, 171, 172, 174, 192, 279, 280], "secur": [57, 94, 162, 222, 304, 307], "ubc94": [57, 162], "squar": [57, 67, 118, 119, 137, 138, 162, 172, 222, 223, 224, 225, 228, 230, 234, 238, 252, 265, 280, 283, 287, 292, 300, 315, 330, 331, 338, 345, 347, 352, 357, 405], "ubc": [57, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 162], "clai": [57, 162], "unsecur": [57, 94, 162], 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247, 299, 314, 321], "prefab": [64, 169], "stringer": [64, 169], "fill": [64, 110, 117, 129, 136, 169, 230, 237, 291, 293, 297, 319, 347, 352], "pan": [64, 169], "rigid": [64, 114, 119, 133, 138, 169, 222], "insuffici": [64, 169], "establish": [64, 169, 222, 238, 239, 240, 245, 253, 255, 262, 333, 356], "mka": [64, 169], "cast": [64, 77, 109, 111, 117, 120, 128, 130, 136, 139, 169, 182], "kind": [64, 169, 231, 338, 343, 348], "021d": [64, 81, 83, 90, 169, 186, 188, 195], "hybrid": [64, 169, 239, 262], "rigidli": [64, 169], "wallpap": [66, 171], "ceram": [66, 171], "002d": [66, 83, 171, 188], "marbl": [66, 171], "003d": [66, 69, 171, 174], "pipe": [67, 75, 76, 77, 78, 79, 87, 121, 122, 172, 180, 181, 182, 183, 184, 192, 207, 208, 222, 279, 280, 314], "offic": [67, 94, 172, 206, 207, 208, 209, 237, 238, 239, 245, 278], "ceil": [67, 70, 71, 83, 87, 112, 131, 172, 175, 176, 188, 192, 279, 299, 301], "lowest": [67, 172, 238, 239, 240, 241, 253, 255], "carpet": [67, 94, 172], "vinyl": [67, 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254, 266, 286, 296, 300, 314, 332, 345, 356], "004a": [69, 174], "inspect": [69, 174, 238, 266, 279, 280, 315, 352, 357], "oshpd": [69, 75, 76, 77, 78, 79, 83, 87, 174, 180, 181, 182, 183, 184, 188, 192, 339], "004b": [69, 174], "004c": [69, 174], "004d": [69, 174], "hung": [70, 175], "rod": [70, 114, 119, 133, 138, 175], "cabl": [70, 175], "gymnasium": [70, 175], "movement": [70, 175, 279], "swai": [70, 175], "21": [71, 80, 143, 176, 185, 230, 234, 237, 241, 253, 264, 301], "pedast": [71, 176], "independ": [71, 83, 176, 188, 230, 231, 234, 241, 333, 336, 339, 343, 346, 356, 373], "pendant": [71, 176], "stair": [72, 177], "traction": [73, 178], "prior": [73, 178, 231, 234, 324, 329, 330, 331, 347], "hydraul": [73, 178], "postdat": [73, 178], "lift": [74, 179], "hot": [75, 80, 180, 185, 238, 239], "potabl": [75, 180], "diamet": [75, 76, 78, 79, 180, 181, 183, 184], "seper": [75, 76, 77, 78, 79, 180, 181, 182, 183, 184], "mep": [75, 76, 77, 78, 79, 87, 180, 181, 182, 183, 184, 192], "reloc": [75, 76, 77, 78, 79, 180, 181, 182, 183, 184], "014a": [75, 76, 78, 79, 180, 181, 183, 184], "regul": [75, 76, 77, 78, 79, 83, 87, 180, 181, 182, 183, 184, 188, 192, 262], "014b": [75, 76, 77, 78, 79, 180, 181, 182, 183, 184], "dia": [75, 180], "024a": [75, 76, 77, 78, 79, 87, 180, 181, 182, 183, 184, 192], "osphd": [75, 180], "024b": [75, 76, 77, 78, 79, 180, 181, 182, 183, 184], "iron": [77, 182], "bell": [77, 182], "spigot": [77, 182], "domest": [80, 185], "sanitari": [80, 185], "wast": [80, 185, 317], "chill": [80, 86, 185, 191], "steam": [80, 185], "chiller": [81, 186], "ton": [81, 186], "isol": [81, 82, 83, 84, 85, 89, 90, 91, 107, 126, 186, 187, 188, 189, 190, 194, 195, 196, 222, 279, 322, 324, 356], "750": [81, 89, 90, 91, 186, 194, 195, 196], "011d": [81, 82, 83, 84, 89, 186, 187, 188, 189, 194], "850": [81, 186], "snub": [81, 82, 83, 91, 186, 187, 188, 196], "012d": [81, 82, 83, 186, 187, 188], "012e": [81, 82, 186, 187], "012f": [81, 82, 186, 187], "012g": [81, 82, 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332], "instrument": [86, 191], "fire": [87, 93, 192, 198, 206, 207, 208, 209, 238], "branch": [87, 192, 232], "victaul": [87, 192], "thin": [87, 108, 127, 192], "poorli": [87, 192, 345], "034a": [87, 192], "054a": [87, 192], "064a": [87, 192], "074a": [87, 192], "sprinkler": [88, 193], "kva": [89, 91, 194, 196], "motor": [90, 195], "voltag": [90, 195], "switchgear": [90, 195], "amp": [90, 195], "800": [90, 195], "031d": [90, 91, 195, 196], "033d": [90, 91, 195, 196], "033e": [90, 91, 195, 196], "033f": [90, 91, 195, 196], "033g": [90, 91, 195, 196], "033h": [90, 91, 195, 196], "033i": [90, 91, 195, 196], "033j": [90, 91, 195, 196], "033k": [90, 91, 195, 196], "033l": [90, 91, 195, 196], "batteri": [91, 196], "rack": [91, 97, 121, 196, 202, 207], "charger": [91, 196], "diesel": [91, 196], "032e": [91, 196], "032f": [91, 196], "032g": [91, 196], "032h": [91, 196], "032i": [91, 196], "032j": [91, 196], "032k": [91, 196], "032l": [91, 196], "92": [92, 197, 238, 241, 245, 253], "convei": [93, 198], "plumb": [93, 198], "protect": [93, 121, 122, 198, 207, 208, 238, 239, 245, 247, 253, 254, 259, 304], "electr": [93, 121, 122, 198, 207, 208, 241, 279], "station": [94, 206, 207, 208, 209, 229, 238, 245], "manufactur": [94, 121, 207, 237, 238, 247, 251, 253, 285], "010": [94, 286], "shelv": [94, 245], "museum": 94, "putti": 94, "cabinet": [94, 241], "latch": 94, "velcro": 94, "sticki": 94, "stuff": 94, "coeffici": [94, 230, 232, 286, 287, 292, 317, 335, 338, 345, 356], "020": 94, "home": [94, 120, 139, 206, 207, 208, 209, 237, 238, 241, 245, 246, 247, 251, 253, 256, 261, 262, 285, 304, 307], "entertain": [94, 206, 207, 208, 209, 239], "electron": 94, "mount": [94, 279], "stereo": 94, "bookcas": 94, "deep": [94, 101, 102, 283], "104a": 94, "104b": 94, "105a": 94, "105b": 94, "106a": 94, "81": [94, 234, 241], "106b": 94, "drawer": 94, "114a": 94, "114b": 94, "124a": 94, "124b": 94, "125a": 94, "125b": 94, "movabl": [95, 200], "pallet": [97, 202], "restock": [97, 202], "furnish": [97, 100, 202, 205], "femap": [100, 205], "58_fragilitydatabase_v3": [100, 205], "xl": [100, 205], "publish": [100, 205, 222, 261, 262, 319], "methodolog": [100, 145, 205, 215, 222, 227, 233, 241, 244, 245, 247, 256, 259, 262, 266, 279, 282, 285, 313], "few": [100, 205, 230, 231, 233, 237, 279, 280, 301, 302, 304, 307, 339, 341, 343, 345, 353, 405], "obviou": [100, 205], "typo": [100, 205], "adjust": [100, 205, 229, 239, 240, 245, 255, 326, 338, 346, 356], "captur": [100, 205, 222, 229, 230, 231, 232, 238, 239, 244, 245, 247, 253, 254, 259, 261, 262, 282, 283, 319, 332, 345, 356], "changelog": [100, 205], "db_damageandloss": [100, 205, 314], "blob": [100, 205], "data_sourc": [100, 205], "fema_p58": [100, 205], "simultan": [100, 205, 222, 230, 252, 265, 287, 329], "uniformat": [100, 205], "ii": [100, 205, 239, 254, 262, 283, 345], "nistir": [100, 205], "6389": [100, 205], "demolit": [100, 205, 222], "foundat": [101, 102, 107, 126, 218, 222, 238, 239, 240, 241, 253, 255, 279, 284, 353], "curv": [101, 102, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 230, 232, 233, 241, 264, 286, 300, 314, 339, 342, 356], "distinguish": [101, 102, 238], "settlement": [101, 103, 318], "essenc": [101, 102], "undamag": [101, 102, 266], "slight": [101, 102, 115, 134, 234, 279, 280], "tacitli": [101, 102], "pgd": [101, 102, 229, 321], "attempt": [101, 102, 232, 353], "critic": [101, 102, 247, 253, 262, 266, 285, 321, 356], "pile": [101, 102, 241], "much": [101, 102, 230, 233, 242, 244, 245, 251, 259, 262, 266, 356], "settl": [101, 102], "shallow": [101, 102], "spread": [102, 103, 222, 241, 318, 333], "hc": [104, 105, 107, 108, 109, 110, 111, 112, 113, 114, 115, 118, 119, 121, 123, 124, 126, 127, 128, 129, 130, 131, 132, 133, 134, 137, 138], "facil": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 140, 210, 222, 247, 262, 285, 288, 298, 316], "effici": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 133, 206, 222, 223, 224, 225, 227, 228, 230, 233, 237, 238, 239, 241, 242, 245, 256, 257, 282, 292, 296, 301, 314, 317, 319, 332, 333, 334, 342, 343, 346, 356], "transport": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 145, 206, 215, 222, 227, 244, 259, 278, 292, 314, 318, 319, 321, 356], "shape": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 230, 233, 238, 239, 241, 253, 254, 256, 264, 323, 324, 338, 339], "relat": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 232, 234, 239, 241, 246, 247, 251, 254, 261, 262, 280, 290, 292, 326, 333, 417], "veri": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 127, 131, 206, 230, 232, 234, 238, 253, 257, 280, 317, 356], "influenc": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 230, 239, 248, 251, 252, 257, 264, 265, 280, 287, 291, 292, 295, 347], "wu": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 245, 246, 318, 320], "ceu": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206], "attenu": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 222, 234, 417], "effect": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 125, 142, 143, 206, 222, 224, 225, 230, 231, 232, 233, 237, 244, 245, 247, 250, 251, 259, 260, 266, 283, 285, 291, 295, 301, 314, 315, 332, 334, 344, 356, 417], "formula": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 238], "m7": [104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 206, 229, 237], "varieti": [104, 121, 123, 207, 234, 247, 285, 299], "proport": [104, 123, 230, 232, 238, 247, 280, 283, 295, 335], "brittl": [104, 108, 123, 127], "modern": [104, 115, 123, 134, 143, 227, 239, 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"common/user_manual/usage/desktop/earthquake/physicsBased.rst", "common/user_manual/usage/desktop/earthquake/releasenotes.rst", "common/user_manual/usage/desktop/earthquake/stochasticGroundMotion.rst", "common/user_manual/usage/desktop/earthquake/usageS3hark.rst", "common/user_manual/usage/desktop/earthquake/userSpecifiedDatabase.rst", "common/user_manual/usage/desktop/response/EDP.rst", "common/user_manual/usage/desktop/response/resEE.rst", "common/user_manual/usage/desktop/usage.rst", "common/user_manual/user_inputs_documentation/User_Input_Documentation_Tables.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ConcreteBuildingModel.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/CustomPy.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/CustomPySimulation.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputBayesianCalibration.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputCalibration.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputOptimization.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputReliability.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSampling.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/DakotaInputSensitivity.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/EDP_EarthquakeSelection.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExampleWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ExistingSimCenterEvents.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GaussianProcessInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/GlobalReliabilityWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportSamplesWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/ImportanceSamplingInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetBIM.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetExistingEvent.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/InputWidgetOpenSeesAnalysis.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LatinHypercubeInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/LocalReliabilityWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_BuildingModel.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MDOF_LU.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputSimWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MonteCarloInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelityMonteCarlo.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/MultiFidelitySimWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/NoneEngine.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/OpenSeesBuildingModel.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PCEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/PLoMSimuWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureCombo.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterIntensityMeasureWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputPLoM.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSampling.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSensitivity.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUQInputSurrogate.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SimCenterUnitsCombo.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/StandardEarthquakeEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SteelBuildingModel.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateDoEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateEDP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateGP.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateMFInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateNoDoEInputWidget.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/SurrogateSimulation.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputBayesianCalibration.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputHierarchicalBayesian.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UCSD_InputTMCMC.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UQpyStretch.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UQpySubsetSimulation.rst", "common/user_manual/user_inputs_documentation/User_Inputs_Documentation_RST_Files/UserDefinedEDP.rst", "index.rst"], "titles": ["Syllabus", "By Day", "By Topic", "<span class=\"section-number\">2.2.4.9. </span>DL Applications", "<span class=\"section-number\">2.2.4.5. </span>EDP Applications", "<span class=\"section-number\">2.2.4.7. </span>UQ Applications", "<span class=\"section-number\">2.2.4.8. </span>Building Applications", "<span class=\"section-number\">2.2.4.3. </span>Event Applications", "<span class=\"section-number\">2.2.4.4. </span>Modeling Applications", "<span class=\"section-number\">2.2.4.1. </span>FEM Pre-processors", "<span class=\"section-number\">2.2.4.2. </span>UQ Pre-processors", "<span class=\"section-number\">2.2.4.10. </span>Regional Mapping Applications", "<span class=\"section-number\">2.2.4.6. </span>Simulation Applications", "<span class=\"section-number\">2.2. </span>Software Architecture", "Software Architecture", "<span class=\"section-number\">2.2.4. </span>Backend Applications", "<span class=\"section-number\">2.2.5. </span>C4 Model of Software Architecture", "Level 4 Dynamic Diagrams", "<span class=\"section-number\">2.2.3. </span>File Types and Schemas", "<span class=\"section-number\">2.2.3.1. </span>Inputs", "<span class=\"section-number\">2.2.3.2. </span>Outputs", "<span class=\"section-number\">2.2.1. </span>Overview", "Running Manually", "Run Locally on Your Desktop", "Run Remotely on DesignSafe", "Troubleshooting Errors", "Creating Workflows", "Reading the Log File", "Choosing Component Applications", "Workflow Structure", "<span class=\"section-number\">2.1. </span>Coding Style", "Earthquake Assessment", "Examples", "Hurricane Assessment", "Regional Site Response Assessment", "Build the Backend", "<span class=\"section-number\">1. </span>How to Build", "Build the Backend", "<span class=\"section-number\">2. </span>How to Extend", "<span class=\"section-number\">3.1. </span>Earthquake Response of Portal Frame", "<span class=\"section-number\">3.2. </span>Response to Stochastic Ground Motion", "<span class=\"section-number\">3. </span>Verification", "B.10.31 - Steel Columns", "B.10.33 - Steel Braces", "B.10.35 - Steel Connections", "B.10.41 - RC or Composite Columns", "B.10.42 - RC or Composite Beams", "B.10.44 - RC or Composite Shearwalls", "B.10.49 - RC Flat Slabs", "B.10.51 - Ordinary Reinforced Masonry Walls", "B.10.52 - Special Reinforced Masonry Walls", "B.10.61 - Cold-formed Steel Walls", "B.10.71 - Wood Light Frame", "B.10 - Super Structure", "B.20.11 - Exterior Walls", "B.20.22 - Curtain Walls", "B.20.23 - Storefronts", "B.20 - Exterior Enclosure", "B.30.11 - Roof Coverings", "B.30.31 - Masonry Chimney", "B.30.41 - Masonry Parapet", "B.30 - Roofing", "B - Shell", "C.10.11 - Partitions", "C.10 - Interior Construction", "C.20.11 - Stair Construction", "C.20 - Stairs", "C.30.11 - Wall Finishes", "C.30.21 - Floor Finishes", "C.30.27 - Access Pedastal Flooring", "C.30.32 - Ceiling Finishes", "C.30.34 - Independent Pendant Lighting", "C.30 - Interior Finishes", "C - Interiors", "D.10.14 - Elevators &amp; Lifts", "D.10 - Conveying", "D.20.21 - Domestic Water Distribution - Cold Water", "D.20.22 - Domestic Water Distribution - Hot Water", "D.20.31 - Sanitary Waste", "D.20.51 - Chilled Water Distribution", "D.20.61 - Steam Distribution", "D.20 - Plumbing", "D.30.31 - Cooling Generating Systems - Chilled Water", "D.30.32 - Cooling Generating Systems - Direct Expansion", "D.30.41 - Air Distribution Systems", "D.30.52 - Terminal &amp; Package Units", "D.30.67 - Controls and Instrumentation", "D.30 - HVAC", "D.40.11 - Sprinklers", "D.40 - Fire Protection", "D.50.11 - Electrical Service &amp; Distribution - High Tension", "D.50.12 - Electrical Service &amp; Distribution - Low Tension", "D.50.92 - Other Electrical Systems", "D.50 - Electrical", "D - Services", "E.20.22 - Movable Furnishings", "E.20 - Furnishings", "E - Equipments and furnishings", "F.10.12 - Special Structures", "F.10 - Special Construction", "F - Special Construction &amp; Demolition", "FEMA P-58 2nd Edition", "GF.H - Horizontal Spreading", "GF.V - Vertical Settlement", "GF - Geotechnical Failure", "LF.C1 - Concrete Moment Frame", "LF.C2 - Concrete Shear Walls", "LF.C3 - Concrete Frame with Unreinforced Masonry Infill Walls", "LF.MH - Mobile Homes", "LF.PC1 - Precast Concrete Tilt-Up Walls", "LF.PC2 - Precast Concrete Frames with Concrete Shear Walls", "LF.RM1 - Reinforced Masonry Bearing Walls with Wood or Metal Deck Diaphragms", "LF.RM2 - Reinforced Masonry Bearing Walls with Precast Concrete Diaphragms", "LF.S1 - Steel Moment Frame", "LF.S2 - Steel Braced Frame", "LF.S3 - Steel Light Frame", "LF.S4 - Steel Frame with Cast-in-Place Concrete Shear Walls", "LF.S5 - Steel Frame with Unreinforced Masonry Infill Walls", "LF.URM - Unreinforced Masonry Bearing Walls", "LF.W1 - Wood, Light Frame", "LF.W2 - Wood, Commercial &amp; Industrial", "LF - Lifeline Facilities", "NSA - Non-Structural Acceleration-Sensitive", "NSD - Non-Structural Drift-Sensitive", "STR.C1 - Concrete Moment Frame", "STR.C2 - Concrete Shear Walls", "STR.C3 - Concrete Frame with Unreinforced Masonry Infill Walls", "STR.MH - Mobile Homes", "STR.PC1 - Precast Concrete Tilt-Up Walls", "STR.PC2 - Precast Concrete Frames with Concrete Shear Walls", "STR.RM1 - Reinforced Masonry Bearing Walls with Wood or Metal Deck Diaphragms", "STR.RM2 - Reinforced Masonry Bearing Walls with Precast Concrete Diaphragms", "STR.S1 - Steel Moment Frame", "STR.S2 - Steel Braced Frame", "STR.S3 - Steel Light Frame", "STR.S4 - Steel Frame with Cast-in-Place Concrete Shear Walls", "STR.S5 - Steel Frame with Unreinforced Masonry Infill Walls", "STR.URM - Unreinforced Masonry Bearing Walls", "STR.W1 - Wood, Light Frame", "STR.W2 - Wood, Commercial &amp; Industrial", "STR - Structural", "Hazus Earthquake Methodology - Buildings", "HRD - Road segments", "HTU - Tunnels", "HWB - Bridges", "Hazus Earthquake Methodology - Transportation", "Damage Models", "B.10.31 - Steel Columns", "B.10.33 - Steel Braces", "B.10.35 - Steel Connections", "B.10.41 - RC or Composite Columns", "B.10.42 - RC or Composite Beams", "B.10.44 - RC or Composite Shearwalls", "B.10.49 - RC Flat Slabs", "B.10.51 - Ordinary Reinforced Masonry Walls", "B.10.52 - Special Reinforced Masonry Walls", "B.10.61 - Cold-formed Steel Walls", "B.10.71 - Wood Light Frame", "B.10 - Super Structure", "B.20.11 - Exterior Walls", "B.20.22 - Curtain Walls", "B.20.23 - Storefronts", "B.20 - Exterior Enclosure", "B.30.11 - Roof Coverings", "B.30.31 - Masonry Chimney", "B.30.41 - Masonry Parapet", "B.30 - Roofing", "B - Shell", "C.10.11 - Partitions", "C.10 - Interior Construction", "C.20.11 - Stair Construction", "C.20 - Stairs", "C.30.11 - Wall Finishes", "C.30.21 - Floor Finishes", "C.30.27 - Access Pedastal Flooring", "C.30.32 - Ceiling Finishes", "C.30.34 - Independent Pendant Lighting", "C.30 - Interior Finishes", "C - Interiors", "D.10.14 - Elevators &amp; Lifts", "D.10 - Conveying", "D.20.21 - Domestic Water Distribution - Cold Water", "D.20.22 - Domestic Water Distribution - Hot Water", "D.20.31 - Sanitary Waste", "D.20.51 - Chilled Water Distribution", "D.20.61 - Steam Distribution", "D.20 - Plumbing", "D.30.31 - Cooling Generating Systems - Chilled Water", "D.30.32 - Cooling Generating Systems - Direct Expansion", "D.30.41 - Air Distribution Systems", "D.30.52 - Terminal &amp; Package Units", "D.30.67 - Controls and Instrumentation", "D.30 - HVAC", "D.40.11 - Sprinklers", "D.40 - Fire Protection", "D.50.11 - Electrical Service &amp; Distribution - High Tension", "D.50.12 - Electrical Service &amp; Distribution - Low Tension", "D.50.92 - Other Electrical Systems", "D.50 - Electrical", "D - Services", "E.20.22 - Movable Furnishings", "E.20 - Furnishings", "E - Equipments and furnishings", "F.10.12 - Special Structures", "F.10 - Special Construction", "F - Special Construction &amp; Demolition", "FEMA P-58 2nd Edition", "LF - Lifeline Facilities", "NSA - Non-Structural Acceleration-Sensitive", "NSD - Non-Structural Drift-Sensitive", "STR - Structural", "Hazus Earthquake Methodology - Buildings", "HRD - Road segments", "HTU - Tunnels", "HWB - Bridges", "Hazus Earthquake Methodology - Transportation", "Repair Consequence Models", "<span class=\"section-number\">9. </span>Abbreviations", "<span class=\"section-number\">4. </span>How To Cite", "<span class=\"section-number\">2. </span>Acknowledgments", "Acknowledgments", "<span class=\"section-number\">8. </span>Glossary", "<span class=\"section-number\">3. </span>Copyright and License", "R2D Requirements", "General Requirements", "<span class=\"section-number\">5. </span>Requirements", "&lt;no title&gt;", "Requirements", "Requirements", "Regional Earthquake Hazard Use Cases", "<span class=\"section-number\">2. </span>Methods in SimCenterUQ Engine", "Methods in UCSD UQ Engine", "<span class=\"section-number\">3. </span>Damping Options", "Hazard Occurrence", "<span class=\"section-number\">4. </span>Ground Motion Intensity Spatial Correlation Model Options", "&lt;no title&gt;", "<span class=\"section-number\">1. </span>Dakota Methods", "Anchorage, AK", "Asset Description", "Asset Representation", "Best Practices", "Damage and Loss Estimation", "Getting Started", "Feedback", "Opportunity Areas for Future Refinements", "Hazard Characterization", "Atlantic County, NJ", "Overview", "Preface", "Standard Wind Speed Conversions", "Response Simulation", "Verification Results", "Uncertainty Quantification", "Asset Description", "Asset Representation", "Best Practices", "Damage and Loss Estimation", "Getting Started", "Feedback", "Research Opportunities", "Hazard Characterization", "Lake Charles, LA", "Overview", "Response Simulation", "Verification Results", "Uncertainty Quantification", "Validation Results", "Asset Description", "Asset Representation", "Damage and Loss Estimation", "Opportunity Areas for Future Refinements", "Hazard Characterization", "Memphis, TN", "Network Performance Assessment", "Overview", "Response Simulation", "Sample Results", "Uncertainty Quantification", "Asset Description", "Damage and Loss Estimation", "Example Outputs", "Feedback and Data Request", "Opportunity Areas for Future Refinements", "Hazard Characterization", "San Francisco, CA", "Overview", "Response Simulation", "Uncertainty Quantification", "<span class=\"section-number\">1. </span>About", "About", "<span class=\"section-number\">6. </span>Bugs &amp; Feature Requests", "<span class=\"section-number\">3.1. </span>Sampling, Reliability and Sensitivity Analysis of a Shear Building", "<span class=\"section-number\">3.2. </span>Site Response Analysis with Spatial Variability", "<span class=\"section-number\">3.3. </span>PEER Ground Motion Selection and Nonlinear Response Analysis", "<span class=\"section-number\">3.4. </span>AutoSDA and Nonlinear Response Analysis", "<span class=\"section-number\">3.5. </span>Synthetic Ground Motion Applied to a Shear Buildilng", "<span class=\"section-number\">3.6. </span>PLoM Surrogate Model", "<span class=\"section-number\">3.7. </span>Target Spectrum by Surrogate Hazard GP Model", "<span class=\"section-number\">3.8. </span>Using Multiple Models and Analysis Options in EE-UQ", "<span class=\"section-number\">3.9. </span>Training GP Surrogate Model", "<span class=\"section-number\">3.10. </span>Prediction from GP Surrogate Model", "<span class=\"section-number\">3.11. </span>Multi-fidelity Monte Carlo Simulation", "<span class=\"section-number\">3. </span>Examples", "Install Additional Applications", "MacOS Users", "Windows Users", "<span class=\"section-number\">1.1. </span>Install on Windows 10", "<span class=\"section-number\">1.2. </span>Install on MacOS", "<span class=\"section-number\">1. </span>Installation", "<span class=\"section-number\">5. </span>Capabilities", "<span class=\"section-number\">7. </span>Release Plans", "<span class=\"section-number\">6. </span>Release Notes", "Capabilities", "Release Plans", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "Release Notes", "Capabilities", "Release Plans", "Release Notes", "<span class=\"section-number\">4. </span>Troubleshooting", "<span class=\"section-number\">4.2. </span>Issues While Running", "<span class=\"section-number\">4.1. </span>Startup Issues", "<span class=\"section-number\">2.1.5.1. </span>Configuring CustomUQ Engine", "Bayesian Calibration", "Deterministic Calibration", "Gradient-free Parameter Estimation", "<span class=\"section-number\">2.1.2.3. </span>Reliability Analysis", "<span class=\"section-number\">2.1.2.1. </span>Forward Propagation", "<span class=\"section-number\">2.1.2.2. </span>Global Sensitivity Analysis", "<span class=\"section-number\">2.5. </span>FEM: Finite Element Method", "Surrogate (GP)", "<span class=\"section-number\">2.2. </span>GI: General Information", "<span class=\"section-number\">2.7. </span>RV: Random Variables", "<span class=\"section-number\">2.3. </span>SIM: Structural Model", "SimCenter UQ Engine", "<span class=\"section-number\">2.1.3.5. </span>Multi-fidelity Monte Carlo", "<span class=\"section-number\">2.1.3.4. </span>Probabilistic Learning on Manifolds (PLoM)", "<span class=\"section-number\">2.1.3.1. </span>Forward Propagation", "<span class=\"section-number\">2.1.3.2. </span>Global Sensitivity Analysis", "<span class=\"section-number\">2.1.3.3. </span>Gaussian Process (GP) Surrogate Modeling", "<span class=\"section-number\">2.1.4.2. </span>Calibration of Hierarchical Model", "<span class=\"section-number\">2.1.4.1. </span>Calibration of Non-hierarchical Model", "<span class=\"section-number\">2.1. </span>UQ: Uncertainty Quantification", "<span class=\"section-number\">2.4. </span>EVT: Earthquake Events", "<span class=\"section-number\">2.4.4. </span>Multiple SimCenter", "<span class=\"section-number\">2.4.3. </span>Multiple PEER", "<span class=\"section-number\">2.4.2. </span>PEER NGA Records", "<span class=\"section-number\">2.4.7. </span>Physics Based Ground Motions", "Release Notes", "<span class=\"section-number\">2.4.1. </span>Stochastic Ground Motions", "<span class=\"section-number\">2.4.5. </span>Site Response Analysis", "<span class=\"section-number\">2.4.6. </span>User Specified Database", "<span class=\"section-number\">2.6. </span>EDP: Demand Parameters", "<span class=\"section-number\">2.8. </span>RES: Results", "<span class=\"section-number\">2. </span>User Interface", "User Inputs", "ConcreteBuildingModel", "CustomPy", "CustomPySimulation", "DakotaInputBayesianCalibration", "DakotaInputCalibration", "DakotaInputOptimization", "DakotaInputReliability", "DakotaInputSampling", "DakotaInputSensitivity", "EDP", "EDP_EarthquakeSelection", "ExampleWidget", "ExistingSimCenterEvents", "GaussianProcessInputWidget", "GlobalReliabilityWidget", "ImportSamplesWidget", "ImportanceSamplingInputWidget", "InputWidgetBIM", "InputWidgetExistingEvent", "InputWidgetOpenSeesAnalysis", "LatinHypercubeInputWidget", "LocalReliabilityWidget", "MDOF_BuildingModel", "MDOF_LU", "MonteCarloInputSimWidget", "MonteCarloInputWidget", 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225, 228, 230, 238, 242, 253, 257, 262, 307, 324, 345, 348, 417], "git": [1, 2, 24, 36], "what": [1, 14, 16, 21, 30, 36, 223, 230, 238, 239, 254, 288, 289, 290, 291, 292, 301, 326, 356, 417], "comput": [1, 13, 14, 16, 21, 23, 24, 29, 31, 39, 95, 221, 223, 224, 225, 227, 228, 230, 231, 233, 234, 239, 240, 241, 242, 245, 247, 248, 249, 251, 255, 256, 257, 279, 280, 283, 284, 285, 286, 288, 289, 292, 293, 294, 296, 298, 299, 301, 302, 303, 304, 307, 314, 317, 319, 320, 328, 329, 330, 331, 332, 333, 334, 339, 341, 342, 343, 344, 345, 346, 347, 352, 353, 354, 356, 360, 405, 417], "philosphi": 1, "data": [1, 13, 14, 16, 21, 24, 25, 26, 27, 28, 29, 30, 43, 48, 55, 56, 65, 95, 148, 153, 160, 161, 170, 221, 222, 223, 224, 225, 227, 228, 230, 231, 233, 234, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 251, 252, 254, 255, 256, 257, 258, 259, 260, 261, 262, 264, 265, 266, 278, 279, 280, 282, 283, 284, 285, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 307, 309, 311, 312, 314, 315, 316, 317, 318, 319, 321, 322, 324, 326, 329, 330, 331, 333, 338, 339, 343, 344, 345, 346, 347, 349, 350, 352, 354, 356, 357, 358, 360, 373, 413], "type": [1, 3, 4, 6, 7, 8, 12, 13, 14, 19, 20, 24, 25, 26, 27, 28, 31, 33, 34, 36, 38, 39, 52, 55, 56, 63, 67, 68, 102, 103, 115, 117, 118, 134, 136, 137, 157, 160, 161, 168, 172, 173, 207, 208, 209, 210, 223, 227, 229, 230, 233, 237, 238, 239, 240, 241, 245, 246, 247, 252, 253, 254, 255, 257, 261, 265, 266, 279, 280, 285, 286, 291, 295, 296, 304, 305, 307, 311, 314, 318, 320, 321, 326, 328, 334, 338, 339, 344, 345, 347, 352, 353, 354, 356, 357], "loop": [1, 14, 39, 230, 237], "condit": [1, 30, 31, 34, 40, 51, 54, 58, 59, 60, 65, 69, 70, 71, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 156, 159, 163, 164, 165, 170, 174, 175, 176, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 207, 222, 223, 230, 231, 234, 257, 260, 287, 291, 292, 295, 311, 324, 344, 345, 346, 352, 354, 356, 357, 415], "function": [1, 14, 15, 19, 28, 30, 31, 33, 34, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 207, 208, 209, 221, 223, 224, 225, 227, 228, 229, 231, 233, 234, 237, 238, 239, 241, 242, 252, 256, 257, 264, 265, 266, 279, 280, 285, 287, 298, 300, 301, 306, 309, 312, 313, 314, 315, 317, 318, 319, 320, 321, 322, 328, 329, 330, 331, 332, 338, 342, 345, 356, 358, 359, 373, 405, 413], "matrix": [1, 31, 223, 224, 225, 228, 231, 232, 238, 251, 253, 264, 333, 335, 338, 342, 344, 347, 354], "6": [1, 19, 20, 21, 28, 31, 33, 34, 36, 40, 45, 48, 49, 51, 52, 54, 55, 56, 84, 88, 95, 105, 106, 108, 109, 110, 111, 112, 113, 114, 115, 116, 119, 120, 122, 124, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 138, 139, 144, 150, 153, 154, 156, 157, 159, 160, 161, 189, 193, 218, 223, 224, 225, 227, 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21, 24, 28, 29, 31, 35, 37, 40, 55, 56, 68, 87, 92, 106, 122, 123, 125, 160, 161, 173, 192, 197, 207, 208, 209, 210, 217, 223, 228, 230, 231, 233, 234, 237, 239, 240, 242, 243, 244, 245, 246, 248, 252, 255, 258, 259, 260, 261, 262, 265, 266, 279, 280, 281, 282, 286, 288, 289, 291, 293, 294, 295, 296, 297, 298, 299, 300, 301, 311, 312, 314, 316, 318, 320, 321, 324, 326, 328, 329, 330, 332, 333, 334, 335, 336, 339, 341, 343, 345, 346, 347, 349, 352, 353, 354, 355, 357, 358, 360, 373, 405, 413, 417], "c": [2, 14, 16, 21, 23, 27, 31, 33, 35, 36, 37, 38, 45, 47, 76, 77, 78, 79, 80, 84, 88, 101, 150, 152, 181, 182, 183, 184, 185, 189, 193, 206, 221, 222, 230, 231, 232, 234, 238, 239, 241, 245, 247, 249, 253, 254, 256, 257, 259, 262, 265, 266, 278, 279, 280, 284, 285, 286, 295, 296, 305, 306, 327, 329, 335, 338, 339, 342, 353, 355, 356], "perform": [3, 5, 13, 14, 16, 21, 23, 26, 27, 29, 31, 33, 36, 43, 65, 76, 77, 78, 79, 80, 102, 103, 110, 122, 123, 129, 148, 170, 181, 182, 183, 184, 185, 208, 209, 221, 223, 224, 225, 227, 228, 230, 231, 233, 234, 237, 238, 242, 245, 251, 252, 253, 264, 265, 266, 272, 279, 280, 284, 287, 288, 291, 292, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 309, 314, 315, 318, 319, 320, 322, 324, 328, 331, 332, 333, 335, 339, 341, 343, 344, 345, 346, 347, 348, 352, 356, 357, 358, 417], "damag": [3, 13, 15, 16, 19, 20, 23, 27, 29, 30, 31, 33, 43, 45, 55, 56, 59, 63, 95, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 148, 150, 160, 161, 164, 168, 206, 207, 208, 209, 216, 217, 222, 227, 233, 237, 239, 240, 242, 244, 245, 246, 247, 248, 250, 254, 255, 257, 259, 261, 262, 263, 264, 272, 282, 284, 285, 286, 313, 314, 318, 319, 320, 321, 323], "loss": [3, 13, 14, 15, 16, 19, 23, 26, 27, 29, 30, 31, 33, 146, 216, 217, 222, 227, 233, 237, 238, 240, 242, 244, 245, 246, 247, 248, 250, 253, 255, 257, 259, 261, 262, 263, 264, 266, 272, 282, 284, 285, 286, 313, 314, 318, 319, 320, 321, 323, 339], "assess": [3, 13, 20, 26, 27, 29, 32, 223, 224, 225, 227, 228, 230, 233, 237, 238, 240, 241, 245, 247, 251, 253, 255, 256, 259, 262, 264, 272, 279, 280, 284, 285, 288, 296, 301, 312, 314, 319, 321, 323, 326, 345, 352, 357, 417], "subject": [3, 14, 33, 39, 143, 144, 223, 224, 225, 232, 239, 243, 245, 252, 254, 258, 265, 266, 281, 288, 290, 291, 298, 299, 302, 320, 339, 417], "region": [3, 15, 22, 26, 27, 31, 32, 33, 118, 137, 218, 223, 224, 225, 230, 233, 234, 237, 238, 239, 242, 243, 244, 245, 246, 247, 248, 251, 253, 254, 255, 258, 259, 260, 261, 262, 266, 279, 280, 283, 284, 285, 289, 297, 318, 319, 321, 323, 326, 330, 332, 339, 345, 353], "event": [3, 4, 5, 8, 11, 12, 13, 14, 15, 16, 20, 21, 23, 24, 27, 29, 30, 31, 33, 34, 39, 40, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 217, 222, 223, 224, 225, 227, 228, 229, 232, 233, 235, 237, 242, 244, 245, 252, 257, 259, 261, 262, 265, 266, 282, 284, 285, 287, 288, 291, 292, 297, 302, 311, 312, 314, 318, 320, 321, 324, 326, 332, 335, 337, 339, 350, 351, 352, 353, 354, 355, 356, 357, 358, 360, 417], "It": [3, 4, 5, 6, 7, 8, 12, 13, 14, 16, 19, 21, 24, 30, 31, 33, 34, 36, 122, 123, 208, 209, 221, 223, 230, 231, 232, 233, 234, 238, 239, 242, 245, 253, 254, 257, 260, 264, 266, 286, 292, 299, 300, 304, 305, 306, 331, 332, 335, 342, 345, 348, 352, 353, 356, 357, 358], "take": [3, 6, 7, 8, 12, 13, 14, 16, 21, 24, 31, 33, 221, 230, 233, 237, 238, 239, 249, 252, 253, 254, 257, 261, 262, 265, 288, 297, 299, 300, 301, 302, 304, 307, 312, 314, 326, 329, 334, 335, 344, 347, 358], "input": [3, 6, 7, 8, 10, 12, 13, 14, 16, 18, 20, 21, 23, 25, 27, 28, 29, 36, 38, 39, 40, 68, 173, 221, 223, 224, 225, 228, 229, 232, 233, 238, 242, 245, 246, 251, 253, 257, 260, 261, 264, 266, 280, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 309, 312, 314, 315, 317, 318, 320, 321, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 342, 344, 346, 347, 349, 351, 352, 353, 355, 356, 358, 360, 373, 405], "properti": [3, 4, 7, 15, 19, 20, 34, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 230, 245, 247, 251, 252, 253, 265, 278, 287, 289, 291, 292, 311, 337, 339, 345], "determin": [3, 4, 14, 16, 21, 28, 31, 34, 54, 116, 135, 159, 223, 224, 225, 227, 230, 232, 238, 252, 253, 265, 280, 288, 309, 322, 335, 339, 345, 356, 358], "e": [3, 13, 14, 16, 21, 24, 25, 30, 31, 33, 34, 35, 36, 39, 70, 76, 77, 78, 79, 80, 84, 88, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 136, 175, 181, 182, 183, 184, 185, 189, 193, 206, 207, 208, 209, 217, 223, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 243, 244, 245, 249, 250, 252, 253, 254, 255, 256, 257, 258, 259, 262, 264, 265, 266, 278, 279, 280, 281, 287, 289, 290, 291, 292, 293, 295, 296, 298, 299, 300, 301, 304, 306, 307, 310, 314, 317, 318, 320, 326, 329, 330, 332, 338, 339, 341, 342, 343, 344, 345, 346, 347, 349, 350, 351, 352, 353, 354, 356, 359, 360, 417], "g": [3, 13, 14, 30, 31, 33, 34, 35, 36, 37, 39, 70, 76, 77, 78, 79, 80, 84, 88, 95, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 175, 181, 182, 183, 184, 185, 189, 193, 207, 208, 209, 218, 220, 223, 224, 225, 228, 230, 232, 233, 234, 237, 238, 239, 240, 241, 242, 243, 244, 245, 249, 252, 253, 254, 255, 256, 257, 258, 259, 262, 265, 266, 279, 281, 286, 287, 289, 291, 292, 293, 295, 296, 299, 304, 306, 310, 314, 317, 326, 329, 332, 339, 342, 343, 344, 345, 350, 352, 354, 356, 359, 360, 417], "occup": [3, 34, 207, 208, 209, 210, 223, 237, 238, 239, 241, 247, 253, 254, 256, 262, 264, 279, 285, 286], "structur": [3, 8, 13, 14, 15, 18, 19, 20, 26, 28, 31, 33, 36, 40, 51, 52, 54, 59, 62, 69, 99, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 141, 156, 157, 159, 164, 167, 174, 204, 207, 211, 213, 214, 217, 223, 224, 225, 227, 228, 229, 230, 231, 232, 233, 234, 238, 239, 240, 241, 244, 245, 247, 249, 250, 252, 253, 254, 255, 259, 261, 262, 265, 266, 279, 280, 282, 285, 286, 288, 291, 293, 294, 295, 297, 302, 310, 311, 314, 315, 317, 321, 326, 335, 342, 344, 345, 346, 352, 354, 357, 360, 417], "replac": [3, 20, 34, 36, 39, 59, 65, 101, 164, 170, 206, 223, 224, 225, 230, 237, 238, 241, 279, 280, 299, 300, 302, 314, 316, 333, 343, 344], "cost": [3, 20, 31, 33, 42, 43, 44, 45, 47, 48, 49, 50, 51, 52, 54, 55, 56, 58, 60, 67, 68, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 159, 160, 161, 163, 164, 165, 168, 170, 172, 173, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 207, 208, 209, 210, 212, 213, 214, 223, 227, 230, 233, 237, 238, 241, 257, 280, 284, 314, 333], "number": [3, 11, 14, 16, 17, 19, 20, 31, 34, 39, 223, 224, 225, 227, 230, 231, 232, 233, 237, 238, 239, 240, 241, 242, 244, 245, 247, 249, 253, 254, 256, 257, 259, 260, 262, 264, 266, 278, 280, 282, 285, 291, 292, 293, 294, 295, 296, 298, 299, 300, 301, 304, 305, 307, 312, 313, 316, 317, 319, 323, 326, 328, 329, 330, 331, 332, 333, 334, 335, 337, 338, 339, 341, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 373, 405, 413, 414, 415], "stori": [3, 31, 33, 34, 39, 40, 42, 54, 59, 74, 105, 106, 107, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 123, 124, 125, 126, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 147, 159, 164, 179, 209, 223, 230, 237, 238, 241, 244, 247, 253, 254, 256, 259, 262, 264, 278, 279, 280, 285, 286, 291, 292, 293, 294, 295, 298, 299, 301, 302, 309, 314, 318, 322, 337, 339, 354, 358], "specifi": [3, 4, 5, 6, 8, 11, 12, 14, 16, 19, 20, 21, 23, 24, 25, 27, 29, 31, 33, 34, 36, 55, 56, 59, 95, 160, 161, 164, 223, 224, 225, 227, 228, 229, 232, 233, 238, 239, 240, 242, 245, 253, 254, 255, 257, 289, 291, 293, 294, 295, 297, 298, 299, 300, 301, 309, 311, 318, 320, 321, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 338, 339, 341, 343, 344, 345, 346, 347, 349, 350, 351, 352, 353, 354, 355, 356, 358, 359, 405, 415, 417], "bim": [3, 4, 6, 7, 8, 11, 12, 14, 15, 19, 23, 27, 29, 34, 217, 242, 253, 257], "well": [3, 23, 40, 110, 129, 207, 208, 209, 210, 230, 231, 233, 239, 241, 244, 245, 246, 247, 248, 256, 261, 262, 264, 266, 285, 298, 299, 300, 301, 312, 333, 334, 344, 345, 356], "respons": [3, 4, 8, 10, 12, 14, 15, 16, 19, 20, 23, 24, 25, 27, 28, 31, 32, 33, 41, 45, 55, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 150, 160, 170, 187, 188, 189, 190, 191, 195, 196, 197, 207, 208, 209, 210, 223, 224, 225, 227, 228, 231, 233, 235, 239, 244, 245, 246, 259, 260, 261, 262, 272, 280, 284, 288, 291, 295, 296, 297, 298, 299, 300, 301, 302, 307, 309, 311, 314, 321, 322, 326, 329, 330, 332, 333, 335, 339, 341, 342, 343, 344, 345, 347, 349, 352, 354, 357, 358, 359, 405, 417], "simul": [3, 4, 5, 6, 7, 8, 10, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 31, 33, 34, 39, 217, 218, 223, 224, 225, 227, 228, 229, 230, 233, 234, 237, 239, 242, 244, 245, 246, 247, 251, 252, 254, 257, 259, 261, 264, 265, 272, 280, 282, 283, 284, 285, 288, 289, 291, 292, 295, 296, 298, 299, 300, 302, 305, 309, 310, 311, 312, 313, 314, 317, 318, 319, 320, 321, 322, 323, 324, 326, 328, 329, 330, 332, 333, 334, 335, 336, 339, 341, 343, 344, 348, 352, 353, 354, 356, 357, 358, 360, 400, 405, 415, 417], "output": [3, 4, 10, 13, 14, 15, 16, 18, 19, 21, 23, 24, 25, 27, 29, 34, 35, 37, 38, 39, 221, 223, 224, 225, 228, 231, 233, 238, 242, 245, 246, 253, 257, 261, 279, 284, 288, 292, 297, 298, 299, 300, 301, 307, 309, 310, 311, 312, 314, 317, 319, 320, 322, 326, 329, 330, 331, 332, 333, 334, 336, 337, 339, 342, 343, 344, 346, 347, 354, 356, 357, 358, 360, 405], "record": [3, 11, 14, 19, 20, 27, 28, 31, 34, 39, 223, 224, 225, 229, 233, 234, 237, 238, 264, 266, 286, 291, 295, 296, 297, 298, 299, 300, 301, 302, 309, 312, 314, 318, 320, 339, 349, 350, 351, 354, 356, 357, 358], "edp": [3, 5, 12, 14, 15, 16, 21, 23, 24, 27, 28, 29, 31, 33, 39, 217, 223, 227, 242, 244, 250, 252, 257, 259, 265, 287, 291, 292, 295, 296, 297, 298, 299, 300, 301, 302, 309, 311, 312, 314, 318, 320, 322, 331, 335, 336, 339, 342, 344, 345, 354, 360, 361], "return": [3, 14, 16, 18, 20, 21, 24, 30, 31, 47, 63, 67, 152, 168, 172, 233, 237, 294, 300, 311, 328, 331, 335, 347, 352, 354], "probabl": [3, 5, 20, 31, 33, 102, 103, 223, 224, 225, 227, 228, 229, 230, 233, 247, 252, 262, 265, 266, 280, 291, 296, 298, 300, 309, 314, 315, 316, 317, 322, 329, 332, 333, 342, 343, 344, 346, 347, 356, 359, 373, 413, 415], "dm": [3, 19, 23, 24, 27, 29, 31, 33, 34, 223, 224, 225, 226, 227, 228, 242, 257], "csv": [3, 23, 25, 27, 29, 34, 223, 233, 237, 242, 257, 278, 279, 293, 294, 314, 318, 320, 339, 342, 344, 351, 352], "decis": [3, 20, 31, 33, 223, 244, 247, 252, 259, 265, 282, 287, 314, 346], "variabl": [3, 5, 13, 14, 15, 16, 20, 21, 27, 31, 33, 36, 38, 39, 84, 189, 217, 230, 231, 233, 234, 252, 265, 266, 286, 287, 288, 291, 294, 295, 296, 297, 298, 301, 302, 304, 307, 309, 312, 314, 322, 326, 328, 329, 330, 331, 332, 333, 334, 335, 339, 343, 344, 346, 347, 350, 351, 352, 355, 358, 359, 360, 373, 405, 417], "estim": [3, 12, 14, 15, 19, 20, 31, 33, 122, 123, 208, 209, 223, 224, 225, 227, 228, 231, 233, 234, 235, 237, 239, 242, 244, 245, 246, 247, 248, 250, 251, 252, 253, 254, 257, 259, 260, 261, 262, 263, 264, 265, 266, 272, 280, 284, 285, 287, 291, 292, 300, 301, 312, 314, 315, 317, 318, 321, 329, 330, 332, 333, 334, 339, 341, 343, 344, 345, 347, 356, 405], "dv": [3, 19, 23, 24, 27, 29, 31, 33, 34, 223, 227, 242, 257], "each": [3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 15, 16, 19, 20, 21, 23, 24, 25, 27, 29, 31, 33, 34, 40, 47, 49, 50, 51, 52, 54, 70, 122, 123, 152, 154, 155, 156, 157, 159, 175, 208, 209, 221, 223, 227, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 245, 247, 252, 253, 254, 255, 256, 260, 264, 265, 266, 278, 279, 280, 283, 286, 287, 291, 292, 294, 295, 297, 298, 299, 301, 307, 312, 314, 316, 317, 326, 329, 330, 331, 332, 333, 334, 335, 336, 338, 339, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 359, 360, 405, 415], "save": [3, 7, 12, 24, 31, 223, 224, 225, 228, 230, 233, 245, 252, 293, 294, 296, 297, 299, 300, 307, 311, 314, 315, 317, 323, 339, 342, 348, 352, 354, 357], "its": [3, 4, 7, 8, 11, 14, 16, 21, 25, 29, 34, 59, 117, 118, 122, 123, 136, 137, 164, 208, 209, 223, 230, 231, 232, 233, 238, 239, 240, 244, 245, 246, 247, 253, 254, 255, 259, 260, 261, 262, 264, 266, 282, 283, 285, 291, 292, 304, 307, 312, 326, 328, 334, 339, 344, 350, 351, 352, 355, 356, 360, 417], "correspond": [3, 4, 5, 7, 8, 11, 13, 14, 15, 27, 31, 33, 43, 148, 223, 227, 230, 231, 233, 238, 239, 241, 252, 253, 254, 256, 261, 264, 265, 266, 279, 285, 286, 287, 291, 292, 293, 294, 296, 298, 299, 301, 312, 328, 329, 330, 332, 333, 335, 338, 339, 341, 342, 343, 344, 345, 347, 351, 352, 353, 356, 360, 405], "work": [3, 4, 7, 8, 12, 14, 16, 21, 23, 27, 30, 34, 39, 76, 77, 78, 79, 80, 95, 116, 135, 181, 182, 183, 184, 185, 219, 220, 223, 230, 237, 238, 241, 242, 257, 284, 299, 304, 305, 306, 307, 313, 314, 316, 317, 323, 326, 328, 332, 335, 337, 339, 348, 353], "directori": [3, 4, 7, 8, 12, 16, 19, 21, 23, 27, 31, 33, 34, 35, 36, 37, 39, 233, 242, 257, 291, 295, 296, 298, 299, 300, 304, 305, 306, 307, 317, 326, 327, 328, 339, 342, 344, 345, 346, 348, 350, 351, 353], "follow": [3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 39, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 142, 143, 144, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 207, 208, 209, 210, 212, 213, 214, 216, 217, 221, 222, 223, 225, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 252, 253, 254, 255, 257, 259, 261, 264, 265, 266, 280, 282, 285, 287, 291, 292, 295, 297, 299, 300, 301, 302, 304, 305, 307, 309, 312, 313, 314, 315, 316, 319, 320, 322, 323, 326, 328, 329, 330, 332, 335, 337, 338, 339, 341, 343, 344, 345, 347, 348, 349, 352, 354, 356, 357, 358, 360, 361, 373], "vari": [3, 4, 5, 6, 7, 8, 11, 12, 13, 16, 26, 34, 40, 55, 63, 98, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 137, 160, 168, 203, 207, 230, 232, 234, 238, 239, 244, 254, 259, 264, 266, 280, 292, 322, 347, 356], "softwar": [3, 5, 30, 36, 38, 39, 221, 222, 223, 224, 225, 228, 230, 237, 280, 283, 288, 303, 304, 305, 326, 330, 338, 348, 360], "packag": [3, 5, 14, 36, 87, 192, 230, 257, 304, 305, 307, 314, 317, 327, 328, 342, 345, 351, 405], "main": [3, 4, 5, 6, 7, 8, 11, 12, 14, 30, 31, 36, 88, 101, 193, 206, 230, 239, 241, 245, 254, 280, 291, 299, 301, 326, 334, 339, 344, 345, 360], "html": [3, 4, 5, 6, 7, 8, 11, 12, 237], "demand": [4, 14, 15, 39, 54, 55, 56, 59, 65, 74, 82, 83, 84, 85, 86, 90, 91, 92, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 123, 159, 160, 161, 164, 170, 179, 187, 188, 189, 190, 191, 195, 196, 197, 207, 209, 217, 223, 233, 247, 252, 265, 279, 285, 286, 287, 295, 296, 298, 301, 312, 314, 318, 319, 328, 344, 354, 360], "paramet": [4, 6, 12, 14, 15, 16, 19, 20, 31, 33, 59, 74, 101, 164, 179, 206, 217, 223, 224, 225, 227, 228, 230, 238, 252, 253, 265, 266, 286, 287, 291, 292, 294, 295, 298, 299, 300, 301, 312, 314, 315, 317, 318, 320, 328, 329, 330, 332, 333, 334, 336, 338, 339, 342, 343, 344, 345, 346, 352, 354, 355, 356, 360, 373, 405, 414], "expect": [4, 15, 40, 42, 84, 88, 115, 134, 147, 189, 193, 230, 234, 238, 240, 241, 242, 251, 253, 255, 256, 257, 264, 266, 279, 299, 301, 342, 344, 345, 347, 405], "from": [4, 5, 7, 13, 14, 15, 16, 18, 20, 21, 24, 27, 29, 30, 31, 33, 34, 35, 37, 38, 39, 40, 42, 48, 52, 54, 65, 71, 98, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 136, 147, 153, 157, 159, 170, 176, 203, 206, 207, 221, 223, 224, 225, 227, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 259, 260, 261, 262, 264, 265, 266, 278, 279, 280, 282, 283, 285, 287, 288, 289, 291, 292, 294, 295, 296, 297, 298, 299, 301, 302, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 316, 317, 318, 319, 320, 321, 322, 324, 326, 328, 329, 330, 331, 332, 333, 335, 336, 338, 339, 342, 344, 345, 346, 347, 350, 351, 352, 353, 354, 355, 356, 357, 358, 360, 373, 405, 413, 417], "model": [4, 5, 6, 13, 14, 15, 20, 25, 27, 28, 29, 31, 33, 38, 40, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 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34, 217, 339], "write": [4, 11, 30, 39, 291, 304, 305, 307, 320, 324, 330, 358], "locat": [4, 7, 8, 19, 20, 23, 28, 31, 33, 34, 36, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 223, 229, 230, 233, 234, 238, 239, 240, 241, 242, 245, 252, 253, 254, 260, 265, 266, 278, 279, 280, 284, 285, 287, 288, 289, 294, 296, 297, 300, 301, 306, 307, 311, 312, 314, 318, 320, 326, 328, 331, 332, 333, 337, 338, 339, 345, 352, 353, 356, 360], "direct": [4, 19, 20, 23, 24, 30, 31, 34, 87, 102, 103, 113, 115, 132, 134, 192, 222, 223, 227, 230, 234, 238, 239, 242, 253, 257, 261, 283, 286, 291, 292, 294, 298, 299, 300, 301, 314, 328, 339, 345, 346, 351, 352, 355, 356, 405, 417], "dof": [4, 31, 291, 339, 351, 358], "an": [4, 7, 13, 14, 15, 16, 18, 19, 20, 21, 23, 24, 25, 27, 28, 30, 31, 33, 34, 35, 36, 37, 38, 39, 40, 52, 54, 55, 56, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 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400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417], "repres": [8, 13, 20, 30, 55, 56, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 160, 161, 170, 187, 188, 189, 190, 191, 195, 196, 197, 207, 210, 223, 224, 225, 229, 230, 231, 232, 233, 238, 240, 241, 247, 253, 255, 256, 266, 280, 285, 288, 289, 295, 298, 299, 300, 301, 302, 347, 349, 350, 351, 352, 356, 357, 360], "finit": [8, 12, 14, 16, 36, 217, 231, 251, 282, 283, 285, 286, 298, 301, 342, 354, 356, 358, 360], "element": [8, 12, 14, 16, 17, 21, 31, 36, 110, 111, 112, 115, 118, 122, 129, 130, 131, 134, 137, 208, 217, 230, 232, 233, 282, 286, 291, 292, 298, 301, 338, 339, 347, 354, 356, 358, 360], "bknd": 10, "0039": 10, "No": [10, 24, 27, 51, 54, 71, 84, 88, 102, 103, 156, 159, 176, 189, 193, 219, 220, 229, 238, 239, 254, 266, 292, 299, 326, 330, 331, 344, 352, 356, 417], "descript": [10, 24, 30, 47, 102, 103, 152, 223, 224, 225, 227, 228, 229, 239, 242, 244, 245, 246, 247, 248, 254, 257, 259, 261, 262, 266, 272, 279, 280, 284, 285, 286, 288, 290, 314, 326, 352, 360, 373], "cli": [10, 24], "inputfil": 10, "lt": 10, "filenam": [10, 314, 358], "r": [10, 39, 43, 148, 230, 233, 238, 239, 245, 247, 254, 262, 291, 294, 295, 296, 301, 330, 334, 342, 345, 356, 358, 417], "gt": 10, "outfil": [10, 358, 405], "w": [10, 14, 16, 21, 23, 28, 31, 33, 34, 39, 42, 43, 44, 45, 63, 67, 78, 147, 148, 149, 150, 168, 172, 183, 220, 230, 231, 233, 234, 237, 238, 239, 245, 254, 278, 280, 284, 291, 334, 343, 344, 356, 358, 417], "tabfil": 10, "tab": [10, 36, 39, 42, 147, 229, 238, 253, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 307, 311, 314, 317, 326, 329, 330, 335, 336, 337, 338, 339, 341, 342, 343, 344, 347, 348, 350, 351, 352, 355, 357, 358, 359, 405], "0041": 10, "simcenteruq": [10, 223, 224, 225, 228, 235, 296, 301, 309, 315, 317, 322, 338, 342, 343, 344, 348, 354, 417], "under": [11, 14, 22, 33, 34, 36, 42, 102, 103, 147, 219, 220, 222, 223, 224, 225, 227, 228, 229, 231, 233, 234, 239, 242, 244, 245, 247, 252, 257, 259, 260, 261, 262, 265, 266, 284, 285, 286, 287, 288, 289, 292, 296, 298, 299, 300, 301, 302, 304, 305, 306, 307, 312, 314, 319, 326, 330, 336, 339, 342, 345, 352, 356, 357, 417], "For": [11, 14, 16, 18, 19, 21, 23, 24, 25, 26, 27, 28, 30, 31, 33, 34, 35, 36, 37, 59, 110, 129, 164, 221, 223, 229, 230, 231, 233, 234, 237, 238, 239, 240, 241, 242, 245, 247, 252, 253, 255, 256, 257, 258, 262, 264, 265, 266, 278, 280, 282, 285, 287, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 314, 315, 319, 326, 329, 330, 332, 333, 334, 335, 336, 338, 339, 342, 343, 345, 346, 347, 348, 350, 351, 352, 355, 356, 358, 360], "set": [11, 13, 14, 15, 16, 20, 21, 23, 24, 27, 29, 31, 33, 34, 36, 39, 40, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 221, 223, 225, 227, 228, 229, 231, 232, 233, 237, 238, 241, 242, 246, 253, 257, 261, 264, 266, 279, 283, 288, 291, 292, 293, 294, 296, 297, 301, 304, 305, 306, 307, 312, 314, 317, 326, 328, 330, 331, 332, 333, 334, 335, 336, 338, 339, 342, 344, 345, 346, 347, 350, 351, 352, 356, 357, 358], "candid": [11, 231, 233, 314], "must": [11, 18, 19, 26, 28, 30, 110, 129, 222, 227, 229, 232, 238, 239, 241, 254, 291, 298, 304, 305, 307, 326, 328, 329, 330, 331, 333, 335, 336, 338, 339, 347, 350, 351, 352, 356, 357, 358], "input_data": [11, 19, 23, 24, 27, 31, 33, 34], "onc": [11, 14, 16, 21, 24, 31, 34, 36, 59, 74, 164, 179, 230, 233, 238, 240, 242, 253, 255, 257, 293, 294, 297, 301, 304, 305, 307, 328, 331, 336, 338, 339, 342, 345, 348, 352, 353, 356, 357], "chosen": [11, 13, 14, 16, 19, 21, 26, 27, 230, 231, 232, 291, 292, 295, 301, 326, 330, 331, 335, 356], "algorithm": [11, 31, 33, 223, 224, 225, 228, 231, 233, 235, 238, 253, 283, 299, 301, 315, 323, 324, 329, 330, 331, 332, 335, 339, 342, 343, 345, 346, 347, 348, 352, 356, 357, 414, 415], "method": [11, 14, 16, 21, 24, 25, 27, 30, 31, 33, 34, 36, 39, 227, 233, 234, 235, 238, 239, 242, 244, 245, 252, 253, 257, 259, 262, 265, 282, 284, 285, 286, 287, 288, 291, 292, 293, 294, 296, 298, 299, 300, 301, 302, 310, 311, 312, 313, 314, 315, 316, 317, 318, 322, 324, 328, 329, 330, 331, 333, 334, 339, 340, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 354, 356, 357, 360, 400, 405, 414, 415, 417], "make": [11, 13, 14, 15, 24, 30, 34, 35, 36, 37, 223, 227, 230, 231, 232, 238, 239, 240, 245, 252, 254, 255, 265, 266, 280, 288, 299, 300, 301, 304, 305, 307, 326, 328, 345, 356], "script": [12, 14, 16, 19, 21, 24, 25, 27, 28, 34, 223, 224, 225, 227, 232, 233, 238, 239, 242, 246, 248, 253, 254, 257, 261, 291, 295, 299, 301, 304, 307, 309, 310, 314, 317, 320, 326, 330, 331, 335, 339, 342, 344, 345, 347, 356, 358, 373, 413], "These": [12, 14, 15, 16, 25, 34, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 124, 126, 127, 128, 129, 130, 131, 132, 133, 134, 137, 138, 139, 207, 225, 228, 229, 231, 232, 233, 234, 238, 239, 240, 241, 245, 246, 248, 252, 253, 254, 255, 256, 259, 261, 262, 265, 278, 280, 283, 286, 287, 288, 289, 292, 294, 316, 323, 326, 328, 332, 339, 347, 356, 358, 360], "mai": [12, 14, 16, 19, 20, 21, 23, 24, 26, 34, 35, 36, 37, 43, 45, 52, 54, 59, 95, 105, 107, 113, 116, 117, 118, 119, 120, 124, 126, 132, 135, 136, 137, 138, 139, 148, 150, 157, 159, 164, 221, 230, 233, 234, 237, 238, 239, 240, 244, 246, 248, 253, 254, 255, 257, 259, 261, 265, 266, 279, 280, 291, 293, 294, 297, 299, 300, 301, 304, 305, 306, 307, 310, 313, 314, 316, 317, 319, 321, 326, 327, 332, 333, 334, 336, 338, 339, 341, 343, 344, 345, 352, 357, 359, 405], "includ": [12, 13, 14, 19, 28, 30, 31, 33, 36, 39, 42, 43, 44, 52, 54, 59, 70, 76, 77, 78, 79, 80, 88, 95, 102, 103, 118, 120, 122, 123, 137, 139, 142, 147, 148, 149, 157, 159, 164, 175, 181, 182, 183, 184, 185, 193, 207, 208, 209, 210, 222, 223, 224, 225, 228, 229, 231, 232, 233, 234, 238, 239, 240, 241, 242, 244, 245, 246, 247, 252, 253, 254, 255, 257, 259, 261, 262, 264, 265, 266, 278, 279, 280, 285, 287, 292, 298, 304, 305, 306, 311, 313, 314, 317, 319, 320, 321, 323, 324, 333, 335, 337, 339, 342, 343, 347, 351, 352, 354, 356, 417], "integr": [12, 31, 36, 223, 230, 244, 259, 301, 312, 313, 314, 319, 321, 323, 324, 332, 335, 339, 360], "scheme": [12, 332, 333, 335], "converg": [12, 31, 223, 224, 225, 231, 232, 238, 253, 330, 331, 332, 333, 335, 339], "toler": [12, 31, 330, 331, 335, 342, 345, 405], "size": [12, 31, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 58, 59, 60, 63, 65, 67, 68, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 142, 143, 144, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 159, 160, 161, 163, 164, 165, 168, 170, 172, 173, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 207, 208, 209, 210, 212, 213, 214, 238, 239, 251, 253, 266, 292, 300, 301, 331, 339, 342, 343, 344, 345, 346, 347, 356, 373, 413], "etc": [12, 13, 14, 16, 95, 229, 230, 237, 238, 241, 243, 253, 258, 291, 301, 339, 350], "numer": [12, 14, 31, 109, 128, 227, 230, 231, 232, 238, 245, 252, 265, 288, 324, 329, 335, 339, 342, 344, 346, 347, 356, 417], "after": [12, 20, 25, 29, 31, 36, 39, 107, 118, 126, 137, 223, 231, 233, 234, 238, 239, 242, 253, 257, 262, 264, 266, 291, 292, 299, 300, 301, 304, 306, 307, 315, 317, 338, 341, 343, 346, 348, 350, 351, 352, 356, 357, 358, 360], "complet": [12, 16, 18, 20, 21, 24, 27, 29, 31, 59, 102, 103, 116, 135, 164, 230, 233, 242, 244, 257, 279, 280, 282, 284, 285, 291, 295, 297, 299, 300, 301, 307, 314, 326, 341, 342, 343, 345, 347, 355, 360], "procedur": [12, 13, 34, 221, 230, 238, 253, 292, 293, 297, 299, 300, 307, 332, 339, 345, 356], "scientif": [13, 14, 21, 221, 223, 224, 225, 228, 230, 283, 329, 360], "system": [13, 14, 15, 16, 21, 24, 27, 31, 34, 35, 36, 37, 40, 69, 87, 93, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 174, 192, 198, 207, 208, 209, 210, 221, 223, 224, 225, 228, 230, 232, 233, 238, 245, 253, 279, 283, 286, 293, 303, 304, 305, 307, 308, 309, 320, 322, 332, 334, 335, 339, 344, 354, 405, 415, 417], "sequenc": [13, 14, 16, 17, 21, 27, 221, 244, 259, 282, 291, 326, 333, 341, 343], "task": [13, 27, 221, 230, 238, 240, 242, 253, 257, 305, 318, 328, 345], "special": [13, 30, 43, 53, 70, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 101, 148, 158, 175, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 206, 222, 223, 247, 261, 292, 302, 337, 350, 356], "natur": [13, 14, 16, 22, 40, 115, 134, 218, 223, 230, 232, 233, 237, 245, 252, 258, 265, 287, 288, 299, 301, 312, 314, 338, 339, 341, 343, 344, 349], "hazard": [13, 15, 16, 19, 22, 26, 28, 33, 34, 217, 218, 223, 224, 225, 227, 230, 237, 238, 239, 240, 241, 243, 244, 246, 248, 253, 254, 256, 257, 258, 259, 261, 266, 272, 279, 282, 284, 288, 294, 300, 302, 311, 312, 314, 318, 319, 320, 321, 323, 339, 352, 354, 357], "nhe": [13, 14, 16, 21, 223, 228], "problem": [13, 25, 30, 39, 221, 230, 234, 291, 293, 295, 296, 301, 302, 304, 307, 317, 326, 330, 331, 333, 335, 338, 345, 347, 348, 356], "In": [13, 14, 16, 18, 21, 25, 26, 27, 30, 31, 33, 34, 35, 36, 37, 39, 84, 95, 102, 103, 106, 107, 113, 116, 118, 125, 126, 132, 135, 137, 189, 223, 224, 225, 228, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 245, 246, 247, 248, 253, 254, 255, 260, 262, 264, 266, 280, 285, 288, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 311, 316, 328, 331, 332, 333, 334, 335, 336, 338, 339, 341, 342, 343, 344, 346, 347, 352, 355, 356, 357], "contrast": [13, 233, 234, 245, 253, 266, 280, 284, 285, 314], "more": [13, 16, 19, 23, 24, 25, 31, 33, 34, 36, 71, 105, 106, 107, 109, 110, 112, 113, 114, 116, 117, 118, 119, 124, 125, 126, 128, 129, 131, 132, 133, 135, 136, 137, 138, 142, 176, 223, 224, 225, 229, 230, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 250, 252, 253, 254, 255, 256, 257, 259, 261, 262, 263, 265, 266, 278, 279, 280, 282, 283, 285, 286, 292, 296, 299, 301, 304, 311, 314, 317, 321, 326, 328, 330, 331, 332, 333, 334, 338, 341, 342, 343, 344, 345, 346, 347, 352, 353, 355, 356, 357, 359, 360, 405], "purpos": [13, 30, 34, 40, 222, 225, 228, 232, 238, 239, 254, 261, 280, 293, 295, 300, 301, 313, 316, 323, 345, 356, 358], "taverna": 13, "kepler": 13, "pegasu": 13, "featur": [13, 30, 36, 119, 138, 223, 225, 228, 238, 239, 240, 241, 243, 246, 252, 254, 255, 256, 257, 258, 261, 262, 265, 266, 280, 288, 289, 295, 301, 304, 309, 311, 313, 314, 315, 316, 318, 319, 320, 321, 322, 323, 324, 343, 345, 347, 354, 356, 417], "access": [13, 14, 16, 21, 24, 72, 98, 122, 177, 203, 208, 223, 237, 244, 247, 253, 254, 257, 261, 262, 264, 266, 284, 285, 313, 314, 319, 328, 329, 348], "high": [13, 14, 16, 21, 23, 45, 47, 51, 54, 67, 76, 77, 78, 79, 80, 84, 88, 93, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 138, 139, 150, 152, 156, 159, 172, 181, 182, 183, 184, 185, 189, 193, 198, 207, 208, 209, 210, 223, 224, 225, 227, 228, 231, 235, 237, 238, 244, 245, 247, 259, 262, 266, 280, 282, 284, 285, 290, 298, 310, 315, 317, 319, 320, 322, 323, 324, 332, 335, 341, 343, 345, 346, 417], "resourc": [13, 14, 16, 21, 23, 29, 38, 223, 224, 225, 228, 231, 235, 242, 245, 247, 248, 257, 266, 278, 284, 298, 345], "avail": [13, 14, 16, 21, 23, 26, 27, 28, 34, 36, 39, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 142, 143, 144, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 207, 208, 209, 210, 212, 213, 214, 216, 223, 224, 225, 227, 228, 229, 230, 234, 236, 237, 239, 240, 242, 244, 245, 246, 252, 253, 254, 255, 260, 261, 265, 278, 280, 288, 293, 294, 297, 302, 304, 305, 307, 309, 312, 314, 315, 318, 322, 326, 327, 328, 330, 331, 332, 333, 335, 339, 342, 343, 345, 347, 348, 349, 352, 353, 354, 355, 356, 357, 358, 360, 417], "cloud": [13, 14, 16, 21, 24, 218, 306], "enabl": [13, 218, 223, 227, 239, 244, 246, 247, 254, 259, 261, 262, 295, 304, 311, 313, 314, 321, 322, 342, 343, 345, 352, 354, 357], "parallel": [13, 29, 36, 118, 137, 238, 242, 253, 257, 286, 295, 299, 317, 331, 334, 345, 348, 405], "non": [13, 45, 59, 65, 69, 71, 83, 109, 128, 141, 144, 150, 164, 170, 174, 176, 188, 211, 223, 224, 225, 227, 228, 230, 232, 238, 239, 240, 241, 255, 279, 280, 286, 287, 295, 298, 306, 314, 330, 335, 338, 339, 342, 344, 345, 356, 417], "trivial": [13, 230, 334, 344], "larg": [13, 77, 79, 80, 83, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 128, 132, 137, 139, 182, 184, 185, 188, 207, 208, 223, 230, 234, 237, 238, 239, 242, 253, 257, 262, 279, 280, 284, 285, 291, 292, 296, 298, 299, 301, 314, 318, 322, 324, 330, 332, 348, 353, 356, 360], "scale": [13, 14, 19, 23, 31, 33, 34, 39, 218, 223, 224, 225, 228, 230, 231, 233, 237, 238, 242, 244, 253, 259, 279, 284, 291, 292, 297, 299, 300, 301, 302, 309, 311, 318, 319, 323, 324, 329, 338, 339, 345, 347, 350, 351, 354, 356, 357, 414], "capabl": [13, 225, 228, 243, 244, 246, 258, 259, 261, 282, 284, 288, 289, 311, 314, 319, 320, 321, 324, 330, 338, 343, 345, 417], "allow": [13, 14, 16, 17, 19, 21, 30, 34, 76, 77, 78, 79, 80, 88, 181, 182, 183, 184, 185, 193, 221, 223, 224, 225, 227, 228, 238, 239, 241, 254, 256, 266, 280, 292, 296, 298, 299, 304, 305, 307, 311, 314, 317, 318, 321, 324, 327, 328, 331, 332, 333, 335, 337, 338, 339, 342, 345, 346, 347, 350, 351, 352, 353, 355, 356, 357, 358, 415], "introduc": [13, 39, 221, 230, 233, 238, 239, 241, 245, 246, 248, 250, 252, 253, 254, 256, 261, 262, 263, 264, 265, 280, 284, 287, 296, 297, 304, 318, 321, 332, 338, 343, 344, 345, 356, 359, 405], "propag": [13, 15, 29, 34, 36, 39, 221, 223, 224, 225, 228, 230, 231, 233, 252, 265, 280, 286, 287, 288, 291, 292, 293, 294, 295, 298, 301, 309, 311, 312, 314, 315, 317, 319, 322, 332, 334, 340, 344, 347, 348, 352, 354, 357], "streamlin": 13, "interfac": [13, 14, 16, 21, 24, 35, 37, 38, 221, 223, 224, 225, 229, 230, 294, 304, 305, 306, 307, 311, 314, 317, 321, 324, 326, 328, 338, 353, 356, 361, 417], "between": [13, 14, 16, 17, 20, 21, 28, 34, 46, 47, 52, 54, 102, 103, 110, 118, 129, 137, 151, 152, 157, 159, 223, 224, 225, 227, 230, 231, 232, 233, 234, 238, 239, 240, 245, 246, 247, 253, 254, 255, 262, 266, 280, 291, 292, 293, 294, 296, 298, 299, 300, 301, 304, 307, 314, 319, 330, 331, 333, 334, 338, 339, 341, 342, 343, 344, 345, 347, 352, 356, 357], "exist": [13, 14, 16, 21, 34, 36, 39, 59, 164, 223, 224, 225, 227, 228, 230, 238, 245, 247, 261, 262, 284, 285, 299, 309, 315, 317, 321, 322, 324, 326, 338, 339, 345, 350, 351, 356, 405], "dataset": [13, 14, 16, 34, 101, 141, 145, 206, 211, 215, 223, 224, 225, 228, 230, 231, 239, 244, 245, 253, 254, 259, 262, 266, 282, 296, 297, 309, 315, 317, 319, 321, 322, 324, 333, 338, 342, 344, 345, 346, 405], "wide": [13, 30, 46, 70, 151, 175, 223, 230, 234, 280, 299, 334, 344], "openfoam": [13, 16, 223, 324], "adcirc": [13, 223, 245, 246], "peer": [13, 14, 223, 224, 225, 289, 291, 294, 296, 297, 298, 299, 300, 302, 309, 311, 314, 318, 320, 321, 349, 350, 354, 357, 417], "strong": [13, 34, 45, 113, 132, 150, 245, 249, 262, 346, 417], "ground": [13, 19, 20, 28, 31, 34, 39, 41, 95, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 143, 144, 207, 217, 223, 224, 225, 229, 230, 233, 235, 238, 244, 245, 246, 248, 253, 254, 261, 262, 266, 280, 283, 285, 286, 287, 289, 291, 292, 296, 298, 301, 302, 309, 310, 311, 313, 314, 318, 319, 320, 321, 324, 339, 342, 345, 349, 351, 354, 356, 357, 405, 417], "motion": [13, 19, 28, 31, 34, 39, 41, 95, 217, 223, 224, 225, 229, 230, 233, 235, 280, 283, 285, 286, 287, 289, 291, 292, 296, 298, 301, 302, 310, 311, 313, 314, 318, 319, 320, 321, 342, 345, 349, 351, 354, 356, 357, 405, 417], "databas": [13, 14, 16, 34, 146, 216, 224, 225, 228, 229, 238, 241, 245, 252, 256, 265, 278, 280, 289, 293, 294, 296, 299, 300, 309, 314, 318, 320, 321, 322, 323, 324, 339, 349, 352, 354], "To": [13, 14, 16, 17, 19, 22, 24, 25, 29, 35, 36, 37, 39, 230, 231, 232, 233, 238, 239, 245, 251, 253, 266, 280, 285, 290, 291, 292, 293, 298, 299, 300, 301, 304, 305, 307, 318, 327, 338, 343, 344, 345, 346, 347, 350, 351, 353, 356, 417], "do": [13, 14, 24, 34, 35, 36, 37, 55, 56, 59, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 102, 103, 160, 161, 164, 170, 187, 188, 189, 190, 191, 195, 196, 197, 219, 220, 230, 231, 233, 234, 239, 253, 261, 284, 291, 295, 299, 304, 307, 326, 328, 332, 335, 338, 339, 344, 345, 347, 350, 352, 355, 358], "develop": [13, 14, 16, 21, 22, 25, 30, 34, 39, 45, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 132, 150, 207, 220, 221, 223, 224, 225, 226, 227, 228, 229, 230, 233, 234, 236, 237, 238, 239, 241, 243, 244, 245, 246, 247, 248, 252, 253, 254, 258, 259, 260, 261, 262, 265, 266, 278, 279, 282, 285, 286, 296, 301, 302, 304, 305, 307, 310, 312, 313, 314, 316, 319, 323, 326, 338, 340, 345, 348, 353, 356], "pre": [13, 14, 16, 21, 27, 29, 34, 44, 59, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 149, 164, 223, 235, 238, 252, 253, 255, 259, 264, 265, 266, 299, 300, 301, 302, 304, 318, 321, 324, 335, 342, 352, 356, 358, 405], "post": [13, 14, 16, 20, 21, 25, 44, 48, 70, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 149, 153, 175, 223, 230, 238, 239, 242, 243, 253, 257, 258, 262, 264, 266, 280, 281, 284, 290, 314, 321, 331, 335, 344, 358, 417], "processor": [13, 14, 16, 21, 238, 242, 253, 257, 283, 301, 335, 348], "util": [13, 14, 16, 21, 23, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 224, 225, 228, 231, 237, 238, 246, 253, 261, 266, 288, 298, 301, 312, 321, 323, 333, 347, 348, 351, 405], "technolog": [13, 207, 208, 209, 210, 223, 238, 239, 245, 253, 260, 261, 284], "servic": [13, 14, 16, 21, 30, 36, 93, 101, 198, 206, 207, 208, 209, 210, 222, 223, 224, 225, 237, 238, 239, 253, 254, 265, 266, 322, 352, 360], "addit": [13, 16, 19, 21, 28, 30, 34, 35, 36, 37, 43, 148, 225, 228, 229, 230, 232, 237, 240, 245, 246, 248, 253, 255, 257, 261, 278, 279, 280, 285, 287, 288, 289, 291, 299, 300, 301, 304, 305, 307, 312, 313, 314, 316, 318, 321, 323, 328, 332, 333, 335, 338, 342, 345, 356, 358, 359, 405, 417], "custom": [13, 19, 26, 28, 31, 33, 36, 223, 227, 230, 239, 245, 301, 314, 315, 321, 323], "produc": [13, 18, 20, 23, 24, 27, 29, 31, 33, 39, 40, 221, 230, 239, 260, 329, 332, 333, 342, 343, 344, 347, 352, 356], "among": [13, 27, 230, 234, 252, 262, 265, 292, 301, 333, 346, 347, 356], "autom": [13, 14, 221, 237, 238, 244, 246, 248, 253, 259, 282, 294, 302, 309, 324, 339, 354, 417], "acquisit": [13, 321], "inventori": [13, 19, 223, 233, 239, 240, 242, 244, 245, 246, 248, 254, 255, 257, 259, 260, 261, 278, 280, 282, 318, 319, 321], "brail": [13, 238, 253, 259, 262, 318, 321], "pass": [13, 14, 16, 21, 27, 29, 30, 221, 230, 291, 304, 307, 312, 317, 328, 358], "regionalev": [13, 27], "modular": [13, 38, 95, 355], "framework": [13, 14, 16, 21, 218, 221, 223, 227, 230, 233, 247, 254, 262, 279, 312, 314, 321, 322, 329, 334, 339, 345], "incorpor": [13, 34, 223, 224, 225, 228, 241, 244, 245, 253, 259, 260, 261, 282, 290, 292, 302, 310, 319, 322, 338, 356], "own": [13, 14, 25, 223, 224, 225, 228, 233, 246, 248, 261, 312, 317, 328, 335, 339, 350, 351, 356, 358], "compon": [13, 15, 17, 20, 21, 26, 29, 31, 33, 34, 36, 38, 55, 56, 59, 60, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 160, 161, 164, 165, 170, 187, 188, 189, 190, 191, 195, 196, 197, 206, 207, 208, 209, 210, 221, 223, 227, 230, 232, 239, 241, 244, 252, 254, 256, 259, 265, 280, 282, 283, 285, 287, 292, 293, 294, 295, 299, 300, 301, 312, 313, 314, 315, 319, 327, 342, 345, 356, 360, 373, 405, 417], "so": [13, 14, 33, 36, 113, 132, 223, 230, 231, 232, 233, 234, 239, 241, 242, 245, 252, 254, 257, 261, 265, 266, 287, 291, 292, 295, 304, 305, 332, 339, 342, 344, 347, 351, 355, 357], "long": [13, 19, 24, 47, 52, 54, 71, 88, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 152, 157, 159, 176, 193, 207, 220, 223, 237, 238, 239, 257, 261, 329, 417], "meet": [13, 14, 16, 21, 45, 69, 150, 174, 221, 239, 248], "detail": [13, 19, 23, 24, 25, 27, 34, 43, 45, 55, 56, 105, 110, 124, 129, 148, 150, 160, 161, 223, 224, 225, 229, 231, 233, 235, 237, 242, 246, 248, 250, 252, 257, 261, 262, 263, 265, 278, 279, 280, 282, 287, 290, 293, 299, 300, 301, 314, 319, 328, 331, 334, 339, 341, 343, 344, 345, 346, 356, 360], "schema": [13, 19, 20, 38, 223, 239, 254], "c4": [13, 14, 17, 21, 38], "dl": [15, 16, 19, 20, 24, 27, 28, 29, 31, 33, 217, 242, 257, 294, 314, 321], "infrastructur": [14, 223, 233, 261, 262, 278, 283, 288, 318, 319, 321], "given": [14, 16, 19, 21, 34, 223, 229, 230, 231, 232, 233, 234, 238, 239, 244, 245, 246, 248, 252, 253, 254, 259, 261, 262, 264, 265, 266, 287, 289, 291, 293, 296, 297, 300, 309, 310, 311, 322, 329, 331, 332, 335, 336, 339, 341, 342, 343, 345, 347, 349, 350, 351, 352, 354, 356, 417], "lifelin": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 141, 211, 223, 227, 233, 319], "level": [13, 20, 21, 26, 30, 31, 38, 39, 98, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 203, 223, 229, 230, 232, 233, 238, 239, 240, 241, 244, 247, 252, 253, 255, 256, 259, 260, 262, 265, 266, 278, 279, 280, 282, 284, 285, 290, 291, 301, 304, 313, 332, 333, 339, 356, 415], "learn": [223, 224, 225, 228, 230, 238, 253, 262, 296, 299, 302, 309, 312, 315, 317, 322, 326, 340, 345, 348, 352, 355], "consequ": [13, 14, 36, 55, 56, 69, 76, 77, 78, 79, 80, 95, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 159, 160, 161, 163, 164, 165, 168, 170, 172, 173, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 207, 208, 209, 210, 212, 213, 214, 223, 227, 231, 284, 304, 307, 312, 314, 321, 330, 332, 338, 344], "experiment": [14, 223, 227, 231, 316, 323, 329, 334, 344], "futur": [223, 224, 225, 226, 227, 228, 246, 247, 262, 265, 266, 272, 284, 285, 300, 314, 316, 342, 345, 356, 357, 417], "base": [14, 16, 28, 31, 33, 34, 35, 37, 39, 40, 42, 48, 52, 54, 60, 63, 65, 67, 69, 76, 77, 78, 79, 80, 82, 84, 85, 88, 90, 91, 92, 95, 98, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 141, 145, 147, 153, 157, 159, 165, 168, 170, 172, 174, 181, 182, 183, 184, 185, 187, 189, 190, 193, 195, 196, 197, 203, 206, 207, 208, 209, 211, 215, 219, 220, 223, 224, 225, 227, 228, 229, 231, 233, 234, 235, 238, 239, 240, 241, 245, 247, 250, 252, 253, 254, 255, 262, 264, 265, 266, 278, 279, 280, 283, 285, 286, 291, 292, 294, 295, 300, 301, 302, 307, 309, 310, 311, 313, 314, 315, 317, 319, 321, 322, 324, 328, 329, 330, 331, 332, 333, 334, 335, 339, 342, 343, 344, 345, 346, 349, 352, 354, 356, 357, 417], "ai": [223, 318], "within": [13, 29, 31, 34, 40, 55, 56, 59, 95, 160, 161, 164, 230, 231, 238, 239, 240, 241, 244, 247, 254, 255, 256, 259, 280, 282, 292, 298, 299, 300, 317, 326, 327, 330, 331, 335, 339, 341, 343, 346, 347, 351, 356], "sever": [13, 14, 16, 20, 21, 33, 34, 102, 103, 229, 233, 234, 238, 239, 246, 253, 254, 261, 266, 279, 280, 288, 292, 299, 300, 301, 307, 314, 324, 331, 345, 347, 348, 356], "open": [13, 14, 16, 21, 24, 35, 36, 37, 38, 39, 52, 54, 70, 109, 120, 128, 139, 157, 159, 175, 223, 224, 225, 228, 232, 237, 238, 239, 241, 245, 247, 249, 253, 254, 260, 262, 266, 279, 280, 286, 288, 289, 291, 295, 304, 305, 307, 309, 314, 322, 326, 339, 342, 350, 351, 354, 358, 417], "nga": [13, 14, 40, 223, 224, 225, 234, 289, 293, 294, 296, 297, 299, 300, 309, 311, 314, 318, 320, 321, 349, 354, 357], "current": [13, 14, 16, 21, 28, 31, 36, 43, 148, 230, 232, 233, 234, 239, 240, 241, 243, 244, 248, 253, 254, 256, 258, 259, 282, 292, 299, 300, 301, 304, 305, 307, 309, 314, 315, 317, 318, 322, 328, 329, 330, 333, 335, 338, 339, 342, 343, 345, 346, 347, 348, 355, 356, 357], "avoid": [13, 30, 231, 241, 253, 290, 306, 324, 352], "duplic": [13, 290, 291], "mani": [13, 16, 21, 34, 35, 36, 37, 232, 233, 234, 238, 239, 253, 254, 262, 266, 279, 284, 288, 289, 291, 304, 307, 339, 348, 352, 357, 358, 405], "aim": [13, 16, 19, 230, 259, 332, 333, 335, 339], "facilit": [13, 16, 34, 230, 231, 262, 280, 284, 298, 313, 314, 319, 333, 360], "reus": [13, 16, 299, 300], "common": [13, 14, 16, 118, 137, 230, 232, 238, 239, 240, 253, 254, 255, 262, 304, 318, 326, 356], "encount": [13, 16, 238, 240, 326, 327], "broad": [13, 16, 223], "skill": [13, 16, 246], "chapter": [13, 14, 16, 24, 41, 54, 159, 308, 345], "present": [13, 14, 16, 17, 21, 30, 34, 36, 117, 136, 223, 225, 228, 230, 232, 234, 237, 238, 245, 247, 253, 262, 266, 285, 291, 292, 295, 301, 309, 315, 322, 330, 331, 335, 339, 344, 345, 346, 347, 349, 359, 360], "encourag": [13, 16, 25, 254, 261, 288, 289, 310, 313, 314, 316, 319, 320, 333, 339, 352, 356, 360, 417], "adopt": [13, 16, 231, 234, 238, 239, 245, 246, 247, 248, 250, 254, 259, 261, 262, 266, 285, 292, 293, 314, 338], "graphic": [13, 14, 16, 21, 223, 224, 225, 228, 291, 295, 339, 359, 361], "approach": [13, 16, 30, 223, 230, 231, 232, 238, 239, 241, 242, 244, 245, 247, 250, 253, 254, 257, 259, 261, 262, 285, 286, 288, 299, 301, 314, 319, 332, 333, 343, 345, 356], "diagram": [13, 21, 29, 38, 356], "describ": [13, 16, 19, 20, 34, 52, 54, 157, 159, 229, 231, 234, 236, 237, 238, 239, 241, 244, 245, 247, 252, 253, 254, 256, 259, 262, 265, 282, 285, 287, 292, 300, 312, 328, 335, 338, 339, 342, 355, 356, 360], "variou": [13, 223, 224, 225, 227, 228, 230, 234, 238, 239, 246, 247, 248, 253, 254, 261, 262, 266, 280, 285, 288, 291, 292, 302, 314, 321, 326, 339, 342, 348, 352, 356], "abstract": [13, 16, 30, 221, 223, 328], "top": [13, 16, 31, 34, 40, 52, 54, 110, 112, 129, 131, 157, 159, 223, 238, 239, 240, 241, 242, 253, 255, 291, 293, 294, 295, 296, 301, 304, 339, 342, 343, 350, 351, 352, 356, 357, 360], "down": [13, 14, 16, 21, 27, 30, 52, 54, 157, 159, 225, 237, 245, 261, 279, 280, 291, 292, 295, 304, 305, 330, 332, 333, 335, 338, 339, 348, 349, 352, 353, 355, 358, 360], "start": [13, 14, 16, 19, 20, 21, 27, 29, 30, 36, 39, 223, 224, 225, 226, 227, 228, 231, 237, 239, 246, 259, 261, 290, 292, 294, 296, 301, 304, 305, 306, 307, 324, 326, 327, 329, 330, 331, 342, 345, 350, 353, 357, 358, 405], "show": [13, 14, 16, 21, 34, 36, 39, 40, 223, 224, 225, 228, 229, 230, 231, 233, 234, 237, 238, 245, 251, 253, 257, 260, 262, 264, 266, 280, 283, 286, 291, 292, 293, 294, 295, 297, 298, 299, 300, 301, 302, 307, 317, 326, 329, 332, 333, 334, 338, 346, 347, 350, 352, 356, 357, 359, 360], "how": [13, 14, 16, 21, 22, 23, 24, 27, 28, 32, 230, 238, 239, 244, 246, 247, 248, 253, 254, 259, 261, 290, 291, 292, 293, 299, 300, 301, 302, 335, 345, 352, 357, 373, 405, 417], "would": [13, 16, 24, 36, 38, 116, 135, 225, 228, 229, 230, 233, 234, 237, 238, 241, 243, 244, 245, 252, 254, 256, 257, 258, 259, 265, 266, 281, 282, 284, 288, 289, 290, 291, 292, 295, 296, 300, 342, 358, 417], "interact": [13, 14, 16, 17, 21, 223, 224, 225, 230, 245, 261, 299, 300, 301, 315, 321, 334, 344, 346, 352], "drill": [13, 16, 143], "three": [13, 16, 19, 25, 31, 34, 52, 54, 98, 157, 159, 203, 230, 233, 234, 239, 245, 251, 252, 253, 254, 265, 266, 283, 284, 285, 291, 294, 295, 299, 301, 302, 304, 305, 330, 332, 339, 345, 352, 356], "typic": [13, 16, 20, 21, 110, 113, 115, 119, 120, 122, 123, 129, 132, 134, 138, 139, 208, 209, 221, 230, 232, 233, 234, 238, 239, 253, 254, 279, 291, 292, 296, 299, 304, 305, 307, 326, 329, 330, 331, 345, 347, 349, 350, 356], "uml": [13, 16, 17], "wa": [13, 14, 16, 24, 34, 36, 39, 40, 48, 65, 153, 170, 233, 234, 237, 238, 239, 244, 245, 246, 253, 254, 260, 261, 262, 266, 278, 279, 280, 283, 284, 298, 300, 301, 304, 305, 307, 309, 312, 314, 315, 317, 318, 322, 326, 335, 339, 356, 359, 417], "divers": [13, 16, 261, 262, 352], "knowledg": [13, 16, 223], "understand": [13, 14, 16, 17, 27, 230, 233, 239, 246, 248, 251, 261, 262, 266, 291, 292, 295, 326, 333, 334, 343, 344], "behind": [13, 16, 231, 232, 335], "fit": [13, 14, 16, 21, 30, 47, 65, 152, 170, 222, 223, 227, 230, 233, 234, 238, 241, 252, 253, 256, 265, 299, 315, 330, 331, 333, 338, 343], "four": [13, 16, 19, 20, 33, 40, 142, 230, 233, 238, 239, 242, 251, 254, 257, 260, 266, 279, 283, 291, 293, 294, 298, 331, 333, 337, 338, 339, 360], "real": [13, 223, 229, 231, 238, 245, 253, 266, 278, 292, 316, 328, 347, 356], "world": [13, 14, 16, 21, 223, 231, 238, 253, 279, 292, 316], "term": [13, 24, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 221, 223, 230, 231, 232, 238, 239, 252, 253, 254, 261, 265, 287, 300, 332, 335, 344, 345, 347, 356, 405], "peopl": [13, 284, 285], "who": [13, 30, 244, 246, 248, 261, 282, 284, 335, 336, 339, 345, 352], "other": [13, 14, 16, 19, 24, 30, 33, 34, 44, 55, 56, 74, 93, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 142, 149, 160, 161, 179, 198, 207, 222, 223, 224, 225, 227, 228, 229, 230, 232, 233, 238, 239, 241, 242, 244, 245, 246, 247, 249, 251, 253, 254, 259, 261, 262, 266, 278, 279, 280, 282, 288, 292, 293, 294, 295, 297, 299, 300, 301, 304, 305, 307, 314, 319, 321, 328, 332, 333, 334, 335, 336, 339, 343, 344, 345, 346, 350, 351, 353, 354, 356], "up": [13, 14, 15, 16, 21, 24, 27, 29, 36, 39, 42, 43, 44, 45, 46, 47, 48, 49, 50, 65, 74, 82, 83, 85, 86, 90, 91, 92, 102, 103, 105, 106, 107, 108, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 142, 143, 144, 152, 154, 155, 207, 208, 209, 210, 212, 213, 214, 221, 233, 235, 237, 239, 241, 242, 245, 254, 256, 257, 262, 266, 284, 285, 291, 293, 294, 297, 301, 304, 305, 306, 307, 312, 314, 317, 324, 326, 338, 350, 352, 353, 356, 357], "individu": [13, 14, 16, 21, 23, 25, 27, 29, 36, 221, 223, 224, 225, 228, 233, 234, 237, 238, 240, 242, 244, 246, 247, 248, 252, 253, 255, 257, 259, 261, 262, 264, 265, 280, 285, 291, 292, 295, 326, 329, 330, 339, 347, 348, 352, 356], "implement": [13, 28, 34, 40, 41, 221, 223, 224, 225, 226, 227, 228, 230, 232, 233, 234, 236, 238, 239, 241, 245, 246, 248, 250, 252, 253, 254, 255, 256, 259, 261, 263, 264, 265, 266, 280, 284, 287, 301, 319, 320, 324, 328, 329, 335, 342, 344, 345, 355, 356, 405, 417], "thei": [13, 14, 16, 21, 24, 34, 36, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 221, 223, 227, 229, 230, 232, 234, 238, 239, 240, 245, 254, 255, 280, 288, 289, 291, 295, 299, 304, 305, 307, 314, 316, 332, 334, 335, 336, 338, 339, 343, 345, 346, 347, 350, 351, 353, 355, 405, 417], "section": [13, 22, 27, 30, 36, 39, 84, 115, 134, 189, 225, 228, 230, 232, 233, 234, 237, 238, 239, 242, 245, 252, 253, 254, 257, 259, 264, 265, 266, 280, 287, 290, 291, 293, 294, 304, 305, 307, 321, 332, 335, 339, 345, 360], "definit": [13, 19, 34, 221, 223, 229, 230, 234, 239, 254, 314, 318, 320, 338, 339, 347, 356], "busi": [13, 30, 221, 222, 223, 227, 237, 239, 247], "whole": [13, 221, 238, 239, 332, 333, 345], "part": [13, 36, 71, 101, 176, 206, 221, 223, 227, 230, 233, 238, 240, 245, 249, 254, 255, 295, 314, 332, 333, 338, 339, 346, 350, 351, 353, 356], "dure": [13, 16, 19, 21, 25, 34, 105, 124, 221, 230, 231, 233, 238, 239, 245, 253, 261, 262, 285, 298, 312, 324, 326, 329, 331, 346, 347, 353, 417], "particip": [13, 221], "anoth": [13, 14, 16, 21, 221, 230, 238, 253, 311, 314, 332, 333, 343, 345, 350], "action": [13, 221, 223, 238, 239, 245, 247, 254, 280, 326], "accord": [13, 18, 54, 119, 138, 159, 221, 238, 239, 240, 245, 253, 254, 255, 257, 356], "rule": [13, 221, 231, 239, 241, 252, 254, 265, 356], "manag": [13, 14, 36, 221, 230, 241, 245, 247, 253, 254, 256, 262, 265, 266, 279, 285, 314, 326, 348], "coalit": [13, 221], "oper": [13, 24, 36, 221, 223, 224, 225, 228, 230, 231, 238, 262, 279, 303, 304, 306, 307, 308, 351], "resid": [13, 119, 138, 221, 237, 238, 240, 247, 253, 255, 285], "can": [13, 14, 16, 19, 21, 24, 27, 28, 30, 31, 33, 34, 35, 36, 37, 39, 40, 102, 103, 105, 109, 113, 118, 124, 128, 132, 137, 221, 223, 224, 225, 228, 229, 230, 231, 232, 233, 234, 237, 238, 239, 240, 241, 242, 244, 245, 246, 247, 248, 252, 253, 254, 255, 257, 259, 260, 261, 262, 264, 265, 266, 279, 280, 282, 285, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 304, 305, 306, 307, 308, 312, 314, 315, 316, 322, 323, 326, 328, 329, 330, 331, 332, 333, 334, 335, 336, 338, 339, 341, 342, 343, 344, 345, 346, 347, 348, 350, 351, 352, 353, 355, 356, 357, 358, 360, 373, 405, 417], "self": [13, 221, 328, 329], "group": [13, 16, 19, 20, 31, 33, 34, 122, 123, 207, 208, 209, 210, 221, 223, 225, 227, 230, 237, 239, 241, 245, 246, 251, 254, 261, 280, 295, 314, 315, 338, 343, 345, 346], "loos": [13, 221], "coupl": [13, 78, 183, 221, 223, 224, 225, 227, 228, 241, 244, 245, 251, 256, 259, 280, 282, 343, 356], "coordin": [13, 19, 34, 221, 227, 238, 240, 245, 253, 255, 262, 339], "consum": [13, 221, 230, 333], "subsequ": [13, 14, 16, 21, 59, 164, 221, 237, 257, 286, 292, 322, 328, 356], "becaus": [13, 33, 34, 221, 229, 232, 234, 239, 241, 245, 254, 256, 291, 300, 301, 304, 307, 332, 335, 344, 345, 358, 359], "scientist": [13, 221], "visual": [13, 35, 36, 37, 221, 223, 224, 225, 228, 230, 238, 242, 245, 247, 253, 257, 262, 266, 279, 285, 296, 297, 298, 311, 317, 319, 320, 321, 324, 327, 342, 354, 356, 360], "ever": [13, 30, 221], "increas": [13, 31, 221, 223, 227, 231, 232, 233, 234, 238, 241, 244, 247, 253, 259, 262, 264, 266, 280, 282, 285, 290, 299, 301, 304, 314, 317, 344, 345, 346, 405], "amount": [13, 102, 103, 221, 223, 230, 238, 253, 345], "One": [13, 34, 84, 88, 189, 193, 223, 230, 238, 242, 257, 285, 296, 297, 299, 345], "aid": [13, 221, 223, 224, 225, 228, 324, 326, 343], "schedul": [13, 14, 221], "monitor": [13, 14, 16, 95, 221, 223, 242, 257, 324], "defin": [13, 14, 19, 25, 27, 28, 30, 31, 34, 36, 59, 74, 102, 103, 164, 179, 221, 223, 224, 225, 227, 228, 229, 230, 231, 234, 239, 240, 241, 245, 247, 253, 254, 255, 256, 260, 262, 278, 279, 285, 286, 289, 291, 292, 293, 294, 295, 296, 298, 302, 304, 306, 307, 309, 311, 312, 314, 315, 318, 320, 321, 322, 328, 329, 330, 331, 332, 335, 338, 339, 341, 343, 344, 345, 346, 348, 350, 351, 352, 354, 356, 361, 373, 405, 413, 414], "collect": [13, 14, 20, 24, 27, 34, 41, 146, 216, 223, 231, 233, 237, 238, 239, 253, 262, 266, 278, 285, 314, 337, 360], "domain": [13, 221, 223, 230, 238, 283, 291, 310, 322, 330, 331, 332, 333, 345, 352, 405], "exampl": [13, 14, 19, 20, 22, 23, 24, 25, 27, 30, 31, 33, 34, 36, 39, 40, 122, 123, 208, 209, 221, 223, 224, 225, 228, 229, 230, 233, 238, 239, 240, 241, 252, 253, 254, 255, 256, 257, 265, 279, 284, 286, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 306, 307, 314, 316, 317, 323, 324, 326, 328, 329, 330, 333, 338, 339, 342, 343, 344, 345, 346, 347, 350, 351, 352, 354, 356, 357, 358, 417], "clear": [13, 230, 239, 241, 254, 264, 345], "extend": [13, 31, 52, 54, 157, 159, 221, 223, 227, 233, 238, 239, 244, 245, 246, 248, 254, 259, 261, 262, 280, 291, 304, 305, 312, 314, 323, 335, 338, 356, 417], "context": [13, 21, 38, 231, 246, 248, 261, 284, 373], "i": [14, 16, 19, 21, 24, 25, 33, 36, 39, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 136, 207, 217, 223, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 237, 239, 240, 241, 245, 249, 250, 254, 255, 259, 264, 266, 278, 280, 287, 290, 291, 292, 295, 296, 298, 299, 300, 301, 304, 307, 314, 318, 320, 329, 330, 332, 338, 339, 343, 344, 345, 346, 347, 349, 350, 351, 352, 356, 358, 417], "shown": [14, 16, 21, 27, 28, 29, 34, 36, 39, 40, 43, 148, 223, 230, 231, 237, 238, 242, 245, 251, 253, 257, 264, 280, 290, 291, 292, 293, 295, 298, 299, 300, 301, 304, 306, 307, 328, 330, 331, 332, 333, 334, 335, 337, 338, 339, 343, 345, 347, 348, 350, 351, 352, 355, 356, 357, 358, 359, 360], "we": [16, 17, 21, 24, 34, 36, 38, 41, 229, 230, 233, 237, 239, 253, 266, 280, 284, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 310, 313, 314, 316, 319, 320, 323, 332, 338, 344, 345, 347, 348, 350, 351, 352, 358, 360], "hydrouq": [21, 223], "pbe": [16, 21, 220, 299, 312, 314], "box": [14, 21, 39, 52, 54, 84, 98, 144, 157, 159, 189, 203, 237, 238, 253, 293, 294, 301, 305, 306, 307, 311, 318, 320, 328, 339, 348, 352, 356], "center": [14, 16, 21, 34, 52, 54, 55, 91, 157, 159, 160, 196, 230, 231, 237, 238, 245, 253, 260, 262, 283, 288, 292, 299, 332, 352, 356, 417], "surround": [14, 16, 21, 117, 136, 239, 247, 284, 285, 323], "datadepot": [14, 21], "either": [14, 16, 21, 24, 30, 59, 71, 82, 83, 84, 85, 86, 90, 91, 92, 102, 103, 111, 130, 164, 176, 187, 188, 189, 190, 191, 195, 196, 197, 233, 245, 247, 253, 266, 332, 333, 336, 338, 339, 343, 344, 345, 347, 352, 355, 356, 358, 359, 360, 405, 417], "local": [14, 16, 20, 21, 22, 25, 27, 31, 33, 35, 36, 37, 39, 223, 224, 225, 230, 231, 237, 239, 240, 245, 246, 248, 254, 255, 257, 262, 278, 279, 287, 288, 304, 306, 315, 317, 320, 324, 326, 328, 331, 339, 345, 348, 352, 356, 360, 405, 417], "desktop": [14, 16, 21, 22, 31, 33, 36, 95, 223, 224, 225, 228, 291, 295, 304, 306, 307, 326, 327, 345], "hpc": [14, 16, 21, 223, 224, 225, 228, 231, 248, 328], "environ": [14, 21, 35, 37, 218, 223, 224, 225, 228, 247, 259, 261, 266, 317, 326], "demonstr": [14, 16, 21, 32, 34, 223, 224, 225, 228, 233, 238, 239, 244, 245, 246, 247, 248, 251, 253, 254, 259, 261, 262, 285, 291, 294, 295, 296, 297, 299, 301, 302, 314, 316, 324, 342], "broken": [14, 16, 21, 27, 225, 228, 237, 279], "split": [21, 237, 238, 239, 279, 291, 332, 356, 358], "two": [14, 16, 19, 21, 24, 29, 31, 33, 34, 36, 39, 43, 71, 109, 128, 142, 148, 176, 223, 224, 225, 229, 230, 232, 234, 237, 238, 239, 241, 245, 246, 247, 248, 251, 252, 253, 254, 256, 257, 261, 264, 265, 266, 278, 280, 287, 291, 292, 293, 295, 296, 297, 298, 299, 300, 301, 302, 304, 314, 328, 329, 330, 333, 334, 335, 339, 342, 343, 344, 345, 347, 350, 351, 352, 355, 356], "front": [16, 21, 238, 253, 326], "end": [16, 19, 21, 29, 31, 51, 54, 67, 156, 159, 172, 223, 224, 225, 230, 231, 232, 238, 246, 248, 253, 261, 291, 304, 307, 326, 338, 341, 343, 345, 356], "ui": [14, 16, 21, 36, 237, 317, 326, 356, 360], "back": [16, 21, 98, 203, 230, 234, 237, 246, 247, 261, 282, 295, 304, 307, 314, 326, 342, 360], "cross": [14, 16, 21, 84, 189, 230, 234, 238, 239, 240, 243, 254, 255, 258, 259, 294, 297, 299, 345, 405], "platform": [14, 16, 21, 24, 25, 223, 224, 225, 228, 266, 294, 302, 304, 305, 307, 339, 342, 356, 417], "qt": [14, 16, 21, 30], "come": [14, 16, 21, 225, 228, 230, 232, 304, 307, 314], "form": [14, 16, 17, 21, 24, 30, 52, 53, 54, 157, 158, 159, 222, 230, 231, 234, 238, 239, 241, 252, 253, 254, 265, 287, 298, 305, 317, 329, 332, 333, 345, 352, 357, 358, 359], "where": [14, 16, 19, 20, 21, 23, 24, 28, 31, 33, 34, 42, 43, 59, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 147, 148, 164, 223, 224, 225, 228, 229, 230, 231, 232, 233, 234, 238, 239, 240, 241, 242, 243, 244, 249, 250, 254, 255, 257, 258, 259, 262, 264, 266, 279, 280, 282, 283, 286, 295, 297, 299, 300, 301, 302, 304, 307, 314, 328, 329, 330, 332, 335, 338, 339, 341, 343, 345, 346, 347, 348, 356, 358, 360], "possibl": [14, 16, 21, 28, 30, 118, 137, 222, 223, 224, 225, 226, 227, 228, 232, 233, 238, 239, 240, 241, 243, 246, 252, 254, 255, 256, 258, 262, 265, 266, 280, 287, 296, 297, 298, 299, 345, 346, 350, 351, 352, 353], "made": [14, 16, 21, 102, 103, 223, 231, 237, 239, 240, 244, 245, 246, 247, 248, 251, 255, 259, 261, 262, 282, 288, 291, 295, 304, 305, 307, 314, 317, 346, 348, 353, 356, 417], "now": [14, 16, 21, 36, 39, 230, 233, 237, 291, 293, 294, 295, 304, 305, 311, 314, 328, 339, 354, 356, 358], "break": [14, 16, 21, 223, 241, 245, 247, 279, 314], "major": [14, 16, 21, 34, 118, 120, 137, 139, 142, 144, 229, 233, 238, 242, 251, 253, 257, 261, 264, 266, 279, 292, 294, 296, 314, 318, 344], "block": [14, 16, 21, 30, 36, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 58, 59, 60, 63, 65, 67, 68, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 142, 143, 144, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 159, 160, 161, 163, 164, 165, 168, 170, 172, 173, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 207, 208, 209, 210, 212, 213, 214, 231, 247, 262, 285, 314, 346, 347, 358], "terminolog": [14, 16, 21, 238, 253, 332], "outlin": [14, 16, 21, 27, 30, 36, 240, 255, 318, 356], "widget": [14, 16, 21, 30, 233, 297, 301, 321, 326, 337, 339, 350, 351, 356, 359, 373], "jigsaw": [14, 16, 21], "puzzl": [14, 16, 21], "analog": [14, 16, 21], "piec": [14, 16, 21, 279, 339], "displai": [14, 16, 21, 27, 230, 238, 245, 253, 291, 292, 293, 294, 295, 296, 298, 299, 300, 304, 307, 315, 317, 326, 336, 337, 338, 339, 345, 352, 356, 358, 359, 360], "when": [14, 16, 20, 21, 24, 25, 29, 30, 34, 35, 36, 37, 39, 40, 102, 103, 107, 117, 126, 136, 223, 224, 225, 228, 230, 231, 232, 234, 238, 239, 240, 241, 242, 243, 245, 246, 253, 255, 256, 257, 258, 261, 266, 281, 290, 291, 292, 293, 294, 295, 296, 298, 299, 300, 301, 304, 305, 306, 307, 314, 316, 317, 326, 327, 329, 330, 331, 332, 334, 335, 336, 338, 339, 343, 344, 345, 346, 347, 348, 350, 351, 352, 356, 357, 358, 405], "choos": [14, 21, 26, 39, 223, 227, 238, 240, 291, 292, 293, 295, 297, 298, 305, 307, 317, 335, 339, 341, 343, 350, 351, 352, 356, 357], "remot": [14, 16, 20, 21, 22, 25, 27, 29, 36, 223, 224, 225, 228, 242, 257, 288, 317, 320, 326, 328, 345, 360, 405], "job": [14, 16, 20, 21, 23, 25, 27, 242, 257, 326, 348, 359, 360], "previous": [14, 16, 21, 25, 234, 262, 291, 342, 346, 353], "As": [14, 16, 21, 33, 34, 36, 38, 40, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 234, 237, 238, 239, 240, 245, 246, 247, 252, 253, 254, 255, 257, 262, 264, 265, 266, 280, 287, 288, 292, 293, 294, 295, 301, 304, 305, 307, 328, 330, 332, 335, 339, 344, 352, 353, 356, 357, 358], "seen": [14, 16, 21, 39, 40, 251, 266, 295, 339], "http": [14, 16, 21, 24, 36, 101, 206, 218, 230, 237, 238, 239, 241, 245, 247, 253, 254, 259, 262, 265, 266, 278, 283, 284, 299, 338, 342, 345, 352, 356, 417], "request": [14, 16, 21, 27, 223, 224, 225, 228, 243, 258, 284, 288, 289, 314, 321, 326, 328, 336, 338, 339, 348, 354, 417], "tapi": [14, 16, 21, 27], "rest": [14, 16, 21, 33, 232, 253, 291, 330], "api": [14, 16, 21, 24, 36, 233, 238, 253], "remoteservic": [14, 16, 21], "compris": [14, 21, 30, 36, 238, 253, 360], "femuq": [14, 16, 21], "py": [14, 16, 21, 23, 27, 31, 33, 34, 39, 242, 248, 257, 291, 292, 326, 328, 342, 356], "workflow_driv": [16, 21, 34], "launch": [14, 16, 21, 223, 224, 225, 228, 242, 257, 288, 291, 292, 293, 294, 295, 296, 297, 298, 306, 360], "choic": [16, 21, 28, 229, 230, 238, 239, 253, 254, 305, 328, 335], "workflowappl": [14, 16, 21, 23, 27, 31, 33], "map": [15, 16, 21, 27, 31, 33, 34, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 223, 229, 230, 231, 233, 237, 238, 239, 240, 242, 247, 253, 254, 257, 260, 262, 264, 266, 283, 296, 297, 312, 314, 315, 318, 320, 339, 342], "modifi": [14, 16, 21, 39, 40, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 233, 288, 292, 294, 300, 304, 307, 311, 338, 339, 356, 358], "o": [14, 16, 21, 63, 67, 168, 172, 230, 259, 266, 304, 338, 343], "need": [14, 16, 21, 30, 34, 35, 36, 37, 68, 173, 223, 224, 225, 226, 227, 228, 229, 230, 233, 234, 237, 238, 240, 242, 244, 255, 257, 259, 262, 266, 279, 282, 291, 298, 303, 304, 305, 307, 314, 317, 328, 330, 331, 333, 335, 339, 342, 344, 345, 347, 352, 355, 356, 358, 360, 405], "recompil": [14, 16, 21], "control": [14, 16, 21, 87, 91, 192, 196, 223, 227, 229, 230, 231, 247, 261, 291, 295, 301, 324, 335, 339, 347, 352, 357], "repeatedli": [14, 16, 21], "invok": [14, 16, 21, 30, 304, 307, 326, 328, 342, 354, 358], "figur": [14, 16, 21, 39, 40, 223, 230, 231, 233, 234, 237, 247, 257, 280, 285, 291, 292, 293, 295, 296, 298, 299, 300, 304, 307, 330, 332, 334, 338, 345, 346, 347, 352, 356, 357, 358, 359], "hydro": [16, 21], "r2d_workflow": [16, 21, 23, 31, 33], "best": [16, 21, 25, 65, 170, 230, 236, 238, 246, 253, 261, 262, 266, 331, 332, 335, 339], "understood": [16, 21, 230, 239, 254], "look": [16, 21, 36, 109, 128, 295, 302, 304, 307, 311, 314, 326, 352, 356, 358, 373], "press": [16, 21, 230, 291, 298, 299, 305, 307, 338, 350, 351, 353, 356, 359], "button": [16, 21, 36, 39, 233, 237, 242, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 307, 311, 317, 326, 335, 338, 339, 342, 345, 350, 351, 352, 353, 354, 357, 359, 360], "temporari": [16, 21, 207, 208, 209, 210, 230, 237, 299, 300, 326, 328, 345], "tmp": [16, 21, 24, 326, 339, 353], "insid": [14, 16, 21, 34, 35, 36, 37, 113, 132, 223, 230, 238, 239, 253, 254, 304, 305, 307, 314, 343, 356], "templatedir": [16, 21, 23, 34, 326], "copyfil": [16, 21], "tell": [16, 21, 291], "copi": [16, 21, 36, 39, 45, 52, 54, 150, 157, 159, 242, 257, 291, 295, 304, 307, 345], "outputtojson": [16, 21, 30], "outputappdatatojson": [16, 21], "augment": [16, 21, 247, 262, 285, 299], "ha": [14, 16, 21, 24, 30, 31, 34, 39, 42, 43, 45, 95, 102, 103, 147, 148, 150, 221, 223, 228, 229, 230, 232, 237, 238, 239, 240, 242, 245, 246, 247, 252, 253, 254, 255, 260, 261, 265, 266, 279, 280, 288, 291, 293, 295, 304, 307, 308, 328, 329, 332, 334, 335, 339, 343, 344, 347, 348, 350, 353, 356, 358], "also": [14, 16, 19, 21, 24, 27, 34, 35, 36, 37, 52, 54, 55, 123, 157, 159, 160, 209, 229, 230, 231, 232, 233, 234, 238, 239, 240, 242, 245, 246, 247, 253, 254, 255, 257, 259, 261, 262, 264, 266, 278, 279, 280, 285, 287, 288, 289, 291, 292, 294, 295, 299, 300, 301, 302, 304, 305, 307, 316, 320, 326, 328, 330, 331, 332, 333, 334, 335, 338, 339, 342, 344, 345, 346, 347, 350, 351, 352, 356, 357, 373], "spin": [14, 16, 21, 262, 291, 328], "until": [14, 16, 21, 25, 231, 239, 254, 266, 314, 332, 341, 343, 356], "signal": [16, 21, 30], "been": [14, 16, 21, 24, 31, 34, 45, 101, 102, 103, 150, 206, 221, 225, 228, 232, 238, 239, 240, 246, 247, 253, 255, 261, 285, 304, 307, 308, 326, 328, 332, 346, 348, 350, 352, 356, 357], "over": [14, 16, 21, 52, 54, 120, 139, 157, 159, 223, 230, 233, 239, 241, 244, 245, 246, 247, 249, 253, 254, 259, 261, 262, 266, 279, 280, 283, 285, 304, 333, 345, 352, 356, 360, 405, 415], "argument": [14, 16, 21, 34, 36, 338, 347], "full": [16, 21, 23, 27, 31, 33, 36, 40, 47, 52, 55, 56, 63, 67, 105, 113, 123, 124, 132, 152, 157, 160, 161, 168, 172, 209, 223, 224, 225, 233, 238, 247, 253, 264, 266, 279, 285, 347, 356, 373, 405, 413], "path": [16, 19, 21, 23, 25, 27, 31, 33, 36, 39, 239, 241, 242, 254, 256, 257, 283, 285, 291, 292, 304, 305, 306, 307, 317, 328, 329, 330, 336, 339, 342, 346, 347, 350, 351, 356, 360, 373, 405, 413], "out": [16, 21, 23, 24, 25, 27, 30, 36, 39, 54, 55, 109, 128, 159, 160, 222, 229, 230, 231, 234, 237, 246, 261, 266, 291, 295, 299, 319, 323, 326, 329, 330, 331, 333, 334, 339, 344, 345, 347, 356, 358, 405], "singl": [14, 16, 20, 21, 29, 31, 34, 39, 40, 43, 47, 52, 54, 98, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 134, 138, 144, 148, 152, 157, 159, 203, 207, 208, 209, 210, 223, 229, 230, 231, 232, 233, 237, 238, 240, 241, 247, 253, 255, 256, 262, 264, 278, 285, 291, 298, 299, 300, 301, 304, 305, 331, 332, 343, 352, 356, 358], "line": [14, 16, 21, 27, 36, 84, 120, 139, 189, 223, 224, 225, 228, 237, 238, 239, 253, 254, 264, 291, 293, 295, 304, 305, 326, 328, 332, 339, 345, 347, 350, 351, 356, 358], "space": [16, 21, 30, 31, 34, 45, 51, 54, 71, 118, 137, 150, 156, 159, 176, 230, 231, 234, 238, 239, 245, 253, 264, 266, 283, 291, 295, 299, 306, 317, 328, 329, 330, 332, 339, 341, 342, 343, 344, 345, 347, 348, 350, 353, 405], "separ": [14, 16, 21, 23, 36, 102, 103, 234, 237, 238, 239, 253, 279, 291, 292, 298, 314, 315, 326, 328, 329, 330, 339, 342, 344, 345, 347, 350, 351, 356, 405], "suppli": [14, 16, 21, 83, 188, 223, 224, 225, 311, 317, 322, 347, 349, 354], "getrv": [16, 21, 27], "uqengin": [16, 21], "actual": [14, 16, 21, 55, 56, 95, 160, 161, 230, 238, 245, 247, 253, 266, 299, 300, 301, 304, 307, 334, 335, 343, 345], "param": [16, 21, 30, 328, 347], "done": [14, 16, 21, 35, 36, 37, 39, 223, 229, 242, 257, 291, 292, 293, 294, 296, 301, 328, 339, 347, 350, 351, 352, 356, 357], "notifi": [16, 21], "uqpreprocessor": [16, 21], "read": [16, 18, 21, 25, 26, 29, 30, 31, 39, 223, 224, 225, 228, 261, 291, 299, 304, 305, 307, 324, 332, 334, 344], "them": [16, 21, 30, 39, 107, 115, 117, 126, 134, 136, 223, 227, 234, 240, 242, 255, 257, 258, 288, 289, 298, 304, 305, 307, 314, 326, 338, 339, 345, 356, 357, 360, 405], "happen": [16, 21, 326], "That": [16, 21, 36, 232, 288, 339], "case": [14, 16, 21, 28, 30, 31, 34, 110, 113, 129, 132, 230, 233, 238, 239, 240, 241, 244, 245, 246, 248, 251, 254, 259, 261, 266, 278, 291, 297, 301, 324, 333, 338, 343, 344, 347], "differ": [14, 15, 16, 21, 30, 34, 39, 122, 208, 223, 224, 225, 227, 228, 229, 232, 233, 234, 235, 237, 238, 239, 242, 244, 246, 247, 248, 251, 252, 253, 254, 257, 259, 262, 264, 265, 266, 280, 282, 283, 285, 286, 287, 288, 289, 291, 293, 295, 298, 299, 300, 301, 305, 306, 307, 311, 314, 324, 329, 330, 331, 332, 333, 334, 337, 338, 340, 343, 344, 345, 347, 348, 351, 352, 355, 356, 359, 360], "same": [14, 16, 20, 21, 23, 27, 30, 31, 39, 45, 52, 54, 102, 103, 117, 136, 150, 157, 159, 230, 231, 232, 237, 238, 239, 240, 255, 291, 293, 294, 295, 297, 299, 300, 301, 305, 314, 329, 332, 333, 343, 344, 345, 346, 347, 350, 351, 355, 359], "But": [16, 21, 301], "uqwrapp": [16, 21], "instead": [14, 16, 19, 21, 36, 230, 234, 238, 241, 266, 291, 299, 300, 301, 314, 331, 333, 335, 338, 339, 342, 343, 344, 347, 352, 356], "compress": [16, 21, 70, 107, 117, 126, 136, 175, 339], "12": [16, 21, 27, 31, 33, 34, 36, 39, 47, 48, 49, 50, 51, 52, 54, 71, 93, 95, 99, 144, 152, 153, 154, 155, 156, 157, 159, 176, 198, 204, 223, 230, 234, 237, 238, 239, 241, 253, 254, 264, 266, 278, 291, 293, 334, 338, 343, 417], "send": [16, 21, 291, 360], "13": [16, 21, 27, 31, 33, 34, 52, 55, 56, 63, 144, 157, 160, 161, 168, 223, 230, 234, 237, 241, 253, 264, 266, 278, 283, 293, 294, 301, 345, 352], "transfer": [16, 21, 113, 116, 119, 132, 135, 138, 326], "invoc": [16, 21], "tacc": [16, 21, 24, 223, 224, 225, 228, 288, 315, 356], "portal": [16, 21, 24, 41, 278], "field": [14, 20, 51, 52, 54, 115, 134, 156, 157, 159, 223, 224, 225, 228, 229, 230, 232, 238, 239, 242, 244, 245, 246, 252, 253, 254, 257, 259, 260, 261, 262, 266, 291, 292, 295, 301, 311, 315, 318, 320, 337, 338, 339, 341, 343, 344, 347, 350, 351, 355, 405, 417], "both": [14, 23, 30, 34, 39, 44, 45, 149, 150, 223, 224, 225, 228, 229, 230, 231, 232, 238, 240, 245, 252, 253, 254, 255, 261, 266, 280, 282, 287, 288, 291, 294, 295, 300, 301, 304, 326, 330, 332, 334, 339, 341, 343, 344, 345, 352, 356, 359], "regionsl": 14, "releas": [14, 16, 35, 36, 37, 39, 221, 238, 239, 240, 246, 253, 260, 261, 262, 266, 284, 288, 289, 304, 305, 309, 312, 315, 318, 322, 357, 417], "built": [14, 16, 19, 23, 24, 27, 36, 55, 115, 118, 134, 137, 160, 218, 223, 237, 238, 239, 242, 247, 251, 252, 253, 254, 262, 264, 265, 278, 285, 286, 311, 312, 314, 335, 342, 345], "those": [14, 30, 34, 36, 40, 112, 118, 120, 131, 137, 139, 219, 220, 223, 229, 230, 232, 238, 239, 240, 244, 245, 246, 247, 248, 253, 254, 259, 261, 266, 280, 282, 284, 333, 337, 338, 339, 342, 344, 345, 350, 351, 358, 405], "have": [14, 24, 25, 30, 33, 34, 35, 36, 37, 95, 101, 109, 110, 111, 112, 113, 118, 119, 120, 122, 123, 128, 129, 130, 131, 132, 137, 138, 139, 206, 208, 209, 225, 228, 230, 232, 233, 234, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 252, 253, 254, 255, 256, 257, 258, 261, 262, 264, 265, 266, 279, 280, 281, 284, 285, 288, 289, 290, 291, 294, 298, 299, 301, 304, 305, 307, 310, 313, 314, 316, 323, 326, 332, 334, 335, 338, 339, 343, 344, 345, 346, 347, 348, 352, 356, 357, 405], "limit": [14, 30, 31, 34, 43, 95, 102, 103, 106, 107, 122, 123, 125, 126, 148, 208, 209, 222, 223, 227, 229, 230, 232, 237, 238, 244, 245, 250, 251, 253, 259, 261, 262, 263, 279, 280, 285, 288, 291, 292, 299, 300, 301, 304, 307, 314, 332, 335, 338, 341, 343, 345, 352, 356, 405], "involv": [14, 19, 36, 231, 233, 237, 238, 253, 264, 279, 285, 329, 332, 333, 346], "move": [14, 23, 31, 223, 224, 225, 228, 245, 266, 279, 304, 305, 306, 307, 311, 314, 360], "begin": [14, 29, 30, 230, 231, 232, 237, 261, 329, 330, 338, 345, 356], "state": [14, 19, 20, 31, 33, 43, 55, 63, 74, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 142, 148, 160, 168, 179, 206, 207, 220, 223, 230, 238, 240, 241, 244, 245, 247, 252, 253, 255, 256, 257, 264, 265, 266, 278, 279, 287, 314, 332, 346, 348, 350, 353, 356, 373, 413], "being": [14, 20, 36, 231, 239, 266, 280, 291, 292, 295, 298, 317, 328, 330, 331, 335, 339, 347, 350, 351, 353, 359], "figcontext": 14, "figcontain": 14, "deisignsaf": 14, "figcomponentfront": 14, "figcomponentback": 14, "mostli": [14, 115, 134, 232], "figumle": 14, "figumlw": 14, "figumlpb": 14, "share": [14, 24, 223, 224, 225, 228, 278, 301, 304, 305, 343, 345], "code": [13, 14, 19, 24, 35, 36, 37, 38, 59, 69, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 164, 174, 221, 222, 223, 224, 225, 226, 227, 228, 237, 238, 239, 245, 246, 248, 253, 254, 261, 262, 264, 266, 280, 283, 286, 304, 307, 328, 358], "bundl": [14, 314], "figumlearthquakeev": 14, "figumlwindev": 14, "figumlcommon": 14, "were": [14, 24, 27, 35, 36, 37, 39, 48, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 153, 207, 234, 237, 238, 239, 241, 244, 245, 246, 247, 252, 253, 254, 256, 259, 261, 262, 265, 266, 278, 280, 282, 283, 284, 285, 287, 291, 292, 300, 314, 317, 353, 356], "place": [14, 65, 108, 110, 112, 118, 121, 127, 129, 131, 137, 140, 170, 232, 239, 242, 243, 253, 254, 257, 281, 290, 291, 292, 295, 304, 305, 307, 326, 328, 336, 339, 345, 350, 351, 356], "simplifi": [14, 34, 223, 234, 238, 253, 280, 292, 294, 318, 356], "outsid": [14, 55, 108, 113, 118, 127, 132, 137, 160, 232, 238, 240, 253, 255, 300, 312, 347], "programm": [14, 30], "whom": 14, "envis": [14, 246, 261], "ad": [14, 36, 43, 148, 223, 225, 227, 228, 246, 257, 261, 285, 290, 300, 301, 311, 313, 314, 317, 318, 319, 321, 324, 335, 339, 345, 347, 350, 353, 354, 356, 405], "new": [14, 24, 36, 223, 224, 225, 227, 228, 232, 233, 234, 238, 239, 243, 244, 245, 246, 247, 248, 253, 254, 255, 258, 259, 262, 266, 281, 282, 290, 295, 296, 297, 298, 299, 305, 309, 310, 311, 312, 314, 315, 317, 318, 319, 320, 321, 322, 324, 335, 338, 339, 342, 346, 354, 356], "reduc": [14, 102, 103, 107, 118, 126, 137, 223, 224, 225, 228, 230, 231, 233, 261, 264, 266, 280, 293, 301, 310, 317, 323, 333, 334, 344], "overhead": [14, 319], "compil": [14, 34, 35, 36, 37, 237, 326], "THE": [14, 30, 222, 328], "exhaust": [14, 344], "decid": [14, 223, 227, 230, 301, 341, 343, 405], "myriad": 14, "edit": [14, 24, 30, 36, 39, 146, 216, 223, 227, 239, 254, 291, 305, 307, 314, 328, 332, 350, 352, 356], "label": [14, 20, 25, 31, 238, 253, 264, 314], "suffici": [14, 110, 129, 229, 233, 242, 245, 257, 266, 345], "while": [14, 31, 33, 40, 109, 113, 116, 128, 132, 135, 230, 231, 234, 239, 242, 245, 246, 248, 251, 252, 253, 254, 257, 261, 262, 264, 265, 266, 280, 291, 293, 294, 296, 298, 301, 325, 328, 332, 333, 335, 344, 345, 346, 347, 353, 356, 358], "consist": [14, 19, 30, 52, 54, 65, 115, 118, 134, 137, 157, 159, 170, 229, 230, 231, 233, 234, 239, 241, 247, 253, 254, 256, 257, 262, 266, 280, 285, 299, 301, 314, 333, 342, 347, 356], "certain": [14, 123, 209, 223, 229, 230, 246, 248, 252, 261, 265, 266, 291, 332, 339, 356, 359], "attribut": [14, 230, 240, 241, 244, 246, 247, 248, 252, 255, 256, 257, 259, 261, 262, 264, 265, 266, 278, 282, 285, 300, 301, 321, 334, 344, 357], "relationship": [14, 102, 103, 239, 247, 262], "order": [14, 16, 17, 18, 24, 25, 40, 223, 224, 225, 228, 230, 232, 233, 238, 245, 246, 248, 253, 261, 264, 285, 291, 292, 298, 300, 301, 310, 315, 317, 323, 328, 329, 330, 332, 339, 341, 343, 344, 345, 347, 352, 355, 356], "codemaincod": 14, "strip": [14, 110, 129, 238], "version": [14, 24, 30, 35, 36, 37, 141, 145, 211, 215, 218, 227, 231, 237, 238, 245, 247, 253, 257, 278, 280, 283, 288, 289, 304, 305, 307, 309, 312, 315, 318, 322, 334, 335, 356, 357, 358, 417], "deal": [14, 235], "style": [14, 38, 88, 193], "sheet": [14, 19, 47, 68, 84, 108, 127, 152, 173, 189, 239, 254, 280, 344], "analyt": [14, 223, 224, 225, 228, 230, 245, 252], "pertin": 14, "int": [14, 20, 31, 231, 237, 339, 347, 358], "argc": 14, "char": 14, "argv": [14, 358], "qapplic": 14, "qstring": [14, 30], "tenant": [14, 24, 314], "storag": [14, 95, 98, 122, 203, 208, 223, 227, 241, 256, 262], "agav": [14, 24], "default": [14, 19, 25, 27, 30, 34, 36, 55, 56, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 160, 161, 170, 187, 188, 189, 190, 191, 195, 196, 197, 223, 224, 225, 228, 230, 232, 233, 238, 239, 240, 245, 253, 254, 255, 264, 265, 278, 288, 289, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 306, 307, 315, 317, 332, 335, 338, 339, 341, 343, 344, 345, 349, 350, 351, 352, 353, 356, 360, 373, 400, 405, 414, 415], "dirnam": 14, "window": [14, 23, 24, 25, 30, 34, 35, 36, 37, 52, 54, 109, 128, 157, 159, 223, 238, 241, 245, 249, 252, 253, 254, 259, 265, 279, 280, 293, 296, 298, 299, 300, 301, 303, 304, 307, 308, 314, 324, 327, 338, 342, 356, 360], "workflowappwidget": 14, "theinputapp": 14, "workflowappee_uq": 14, "theremoteservic": 14, "mainwindowworkflowapp": 14, "setvers": 14, "0": [14, 19, 20, 24, 30, 31, 33, 34, 36, 39, 45, 46, 47, 48, 55, 56, 70, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 150, 151, 152, 153, 160, 161, 175, 207, 218, 223, 230, 231, 232, 233, 234, 237, 238, 239, 241, 245, 246, 249, 253, 254, 257, 260, 261, 264, 266, 278, 279, 280, 283, 284, 285, 286, 287, 291, 292, 293, 294, 295, 296, 297, 299, 300, 301, 304, 305, 314, 317, 318, 322, 332, 335, 338, 339, 342, 344, 345, 347, 350, 351, 352, 353, 356, 358, 405, 414, 415], "thread": [14, 76, 77, 79, 80, 88, 181, 182, 184, 185, 193], "qthread": 14, "movetothread": 14, "re": [14, 25, 223, 227, 229, 237, 238, 239, 242, 253, 257, 279, 283, 285, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 317, 326, 342, 344, 356, 360], "exec": 14, "logout": 14, "stop": [14, 307, 318, 320], "quit": [14, 106, 125, 304, 305], "mention": [14, 278, 335], "qmainwindow": 14, "menu": [14, 36, 291, 292, 293, 294, 295, 296, 298, 306, 330, 332, 333, 335, 338, 339, 348, 349, 352, 353, 355, 360], "item": [14, 19, 238, 239, 241, 244, 259, 282, 347, 360], "close": [14, 232, 234, 238, 240, 254, 255, 266, 280, 284, 291, 299, 333, 338, 344, 352, 356, 358, 360], "help": [14, 223, 230, 233, 238, 243, 247, 258, 266, 281, 285, 290, 304, 314, 316, 334, 344, 345, 352, 360], "cite": [14, 417], "qmainwindowworkflowapp": 14, "qwidget": [14, 30], "respond": [14, 25], "underwai": 14, "earthquakeeventselect": 14, "intern": [14, 231, 245, 249, 254, 262, 313, 316, 319, 323, 329, 342, 347], "fem": [14, 16, 27, 223, 224, 225, 228, 230, 232, 291, 292, 293, 295, 296, 297, 298, 299, 300, 301, 304, 305, 311, 317, 324, 330, 331, 334, 336, 339, 341, 342, 343, 344, 347, 354, 356, 360], "randomvariablecontain": 14, "statu": [14, 24, 30, 223, 224, 225, 226, 227, 228, 242, 257, 332, 356, 360], "retriev": [14, 242, 257, 299, 352], "old": [14, 88, 193, 238, 239, 304, 307, 317], "login": [14, 242, 257, 293, 360], "credenti": [14, 352], "ci": [14, 24, 36, 237, 259, 261, 262, 266, 356, 360], "switch": [14, 34, 296, 297, 317, 330, 339], "amazon": 14, "ec": 14, "ibm": [14, 223], "azur": 14, "elsewher": 14, "eu": 14, "similar": [14, 17, 24, 31, 34, 36, 105, 107, 112, 114, 124, 126, 131, 133, 223, 224, 225, 227, 230, 234, 238, 239, 244, 245, 253, 259, 262, 264, 266, 282, 295, 301, 332, 333, 356, 357], "construct": [14, 19, 31, 34, 48, 51, 52, 54, 58, 59, 60, 63, 66, 67, 68, 69, 70, 71, 73, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 101, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 153, 156, 157, 159, 163, 164, 165, 168, 171, 172, 173, 174, 175, 176, 178, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 206, 207, 208, 209, 210, 223, 224, 225, 228, 232, 235, 238, 239, 240, 242, 244, 245, 246, 247, 248, 253, 254, 259, 261, 262, 264, 266, 279, 285, 286, 294, 330, 332, 333, 339, 345, 417], "fact": [14, 102, 103, 230, 232, 239, 254, 266, 280, 339], "onli": [14, 19, 20, 24, 28, 34, 43, 44, 48, 70, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 90, 91, 92, 95, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 135, 148, 149, 153, 175, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 195, 196, 197, 207, 208, 209, 223, 227, 229, 230, 233, 234, 239, 242, 245, 247, 253, 254, 256, 257, 259, 262, 264, 284, 291, 292, 293, 294, 295, 299, 300, 304, 305, 307, 309, 314, 315, 326, 328, 332, 333, 335, 339, 343, 344, 345, 347, 350, 351, 356, 358], "wind": [14, 19, 26, 28, 33, 227, 238, 242, 244, 246, 247, 250, 252, 253, 256, 257, 259, 261, 262, 263, 264, 265, 266, 287, 313, 318, 319, 320, 323, 324], "figwindev": 14, "stochast": [14, 41, 223, 224, 225, 227, 228, 230, 292, 295, 299, 300, 301, 309, 311, 314, 315, 317, 322, 324, 345, 349, 354, 356, 417], "load": [14, 15, 16, 27, 28, 31, 34, 39, 43, 45, 69, 82, 83, 84, 85, 86, 90, 91, 92, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 148, 150, 174, 187, 188, 189, 190, 191, 195, 196, 197, 228, 229, 232, 233, 239, 241, 242, 244, 245, 249, 254, 256, 257, 259, 262, 279, 282, 291, 292, 294, 295, 297, 301, 302, 311, 314, 315, 317, 318, 321, 324, 336, 339, 342, 349, 350, 351, 352, 356, 357, 417], "vortex": [14, 223], "tunnel": [14, 19, 145, 215, 223, 322, 323, 324], "tokyo": 14, "polytechn": 14, "calcul": [14, 27, 40, 95, 223, 224, 225, 227, 230, 231, 232, 238, 241, 244, 250, 253, 259, 279, 280, 282, 287, 292, 294, 296, 299, 311, 312, 313, 314, 321, 334, 339, 345, 347, 348, 352, 356], "downtim": [14, 69, 174, 312, 314], "add": [14, 31, 36, 39, 223, 224, 225, 291, 296, 298, 299, 301, 304, 314, 319, 328, 335, 336, 338, 339, 342, 345, 350, 351, 356, 357, 373, 405], "lossmodelselect": 14, "p58": [14, 223, 227, 314], "hazu": [14, 19, 27, 31, 33, 122, 123, 146, 208, 209, 216, 223, 227, 241, 242, 244, 245, 247, 252, 253, 256, 257, 259, 262, 264, 265, 266, 279, 280, 285, 286, 311, 312, 313, 314, 318, 320, 321, 339], "depend": [14, 28, 29, 31, 34, 35, 37, 116, 118, 122, 123, 135, 137, 208, 209, 223, 227, 230, 231, 234, 238, 240, 245, 253, 255, 257, 301, 303, 304, 307, 310, 313, 314, 316, 319, 323, 327, 333, 346, 349, 352, 355, 356], "calculatedl": 14, "selector": 14, "west": [14, 283, 284, 285, 293, 294, 299, 318, 320, 352, 357], "server": [14, 24, 352], "vlacho": [14, 40, 223, 224, 225, 301, 302, 355, 417], "et": [14, 40, 231, 233, 235, 262, 280, 283, 295, 301, 318, 320, 334, 355], "al": [14, 40, 231, 233, 235, 262, 280, 283, 295, 301, 318, 320, 334, 355], "dabahi": 14, "derkiuerghian": 14, "our": [14, 24, 36, 38, 146, 216, 253, 260, 264, 266, 283, 290, 291, 292, 295, 304, 305, 306, 319], "simcenterev": [14, 27, 31, 33, 34, 242, 257], "rockoutcrop": 14, "siterespons": 14, "wnd": 14, "forc": [14, 19, 27, 31, 33, 34, 106, 107, 109, 111, 113, 114, 116, 119, 125, 126, 128, 130, 132, 133, 135, 138, 223, 232, 291, 294, 329, 333, 335, 339, 358], "univers": [14, 30, 207, 208, 209, 210, 220, 222, 223, 230, 239, 245, 246, 261, 333, 353, 417], "subclass": [14, 241, 247, 256, 285], "simcenterappwidget": 14, "randomvariablescontain": 14, "randomvari": [14, 328], "ransomvari": 14, "randomvariabledistribut": 14, "normal": [14, 39, 52, 59, 60, 63, 65, 67, 68, 69, 70, 71, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 157, 164, 165, 168, 170, 172, 173, 174, 175, 176, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 223, 224, 225, 228, 230, 234, 241, 252, 256, 265, 266, 280, 283, 285, 291, 295, 298, 299, 301, 315, 336, 338, 339, 345, 347, 352, 356, 373, 405], "lognorm": [14, 20, 31, 33, 34, 223, 224, 225, 228, 241, 252, 256, 265, 279, 287, 315, 336, 338, 339], "uniform": [14, 30, 115, 134, 223, 224, 225, 228, 231, 241, 245, 291, 294, 299, 300, 315, 317, 338, 345, 352, 356, 357], "beta": [14, 20, 31, 33, 34, 68, 173, 223, 224, 225, 228, 230, 315, 335, 338, 339, 356], "gumbel": [14, 223, 224, 225, 228, 315, 338], "backendappl": 14, "reli": [14, 34, 230, 304, 347, 355], "extern": [14, 223, 224, 225, 228, 229, 230, 304, 306, 307, 312, 314, 321, 352, 360, 373], "websit": [14, 39, 223, 224, 225, 228, 237, 326, 352, 360], "librari": [14, 16, 34, 36, 40, 223, 234, 239, 244, 254, 259, 282, 304, 312, 319, 327, 342, 345, 352, 355], "figappdiagrambackend": 14, "categor": [15, 344], "intermedi": [15, 29, 231], "next": [15, 31, 34, 231, 234, 237, 242, 252, 253, 257, 287, 291, 292, 293, 294, 295, 296, 298, 307, 313, 314, 316, 328, 331, 332, 346, 347], "everi": [15, 20, 24, 29, 31, 36, 231, 238, 239, 254, 283, 299, 300, 304, 307, 314, 329, 330, 335, 339, 347, 350, 351], "im": [15, 19, 20, 28, 31, 33, 217, 229, 242, 257, 299, 300, 311, 318, 320, 345, 352, 354, 405], "quantifi": [15, 223, 230, 232, 234, 238, 245, 252, 253, 260, 265, 287, 315, 332, 333, 334, 344, 345, 417], "experi": [15, 223, 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105, 124, 160, 232, 233, 234, 237, 279, 280, 284, 285, 326, 331, 356], "preprocessor": 16, "better": [17, 102, 103, 233, 242, 251, 266, 280, 332, 346, 356], "again": [17, 36, 232, 239, 254, 262, 295, 301, 307, 346, 347], "although": [17, 122, 123, 208, 209, 239, 266, 297], "free": [17, 31, 36, 223, 224, 225, 228, 233, 237, 298, 315, 317, 356], "arrang": 17, "indic": [17, 19, 20, 24, 31, 39, 117, 136, 223, 224, 225, 228, 234, 235, 238, 239, 243, 252, 253, 254, 258, 264, 265, 266, 279, 281, 290, 291, 307, 315, 327, 332, 334, 347, 356], "instanc": [18, 33, 35, 36, 37, 233, 234, 239, 240, 245, 252, 254, 255, 282, 314, 328, 333, 342, 352], "prepar": [18, 23, 26, 223, 227, 229, 230, 292, 350, 351, 356, 357], "standard": [18, 20, 29, 30, 31, 33, 34, 39, 40, 43, 51, 54, 88, 95, 98, 148, 156, 159, 193, 203, 223, 224, 225, 227, 230, 231, 232, 233, 234, 238, 239, 245, 246, 248, 253, 254, 260, 261, 262, 266, 291, 292, 293, 294, 295, 296, 298, 299, 300, 301, 309, 312, 314, 315, 322, 332, 333, 335, 338, 339, 343, 345, 347, 352, 354, 417], "content": [18, 29, 34, 95, 98, 122, 123, 203, 208, 209, 241, 278, 291, 295, 326, 328, 345], "deviat": [18, 20, 31, 33, 34, 39, 40, 230, 233, 234, 255, 266, 291, 292, 293, 294, 295, 298, 300, 315, 332, 333, 338, 339, 343, 345, 347, 352], "error": [18, 22, 24, 27, 30, 101, 206, 223, 224, 225, 228, 230, 231, 233, 237, 238, 241, 253, 256, 257, 293, 294, 296, 299, 301, 304, 305, 306, 314, 315, 317, 326, 327, 333, 336, 338, 339, 341, 342, 343, 345, 346, 352, 357, 358, 360, 405], "upon": [18, 52, 54, 60, 63, 67, 69, 76, 77, 78, 79, 80, 82, 84, 85, 88, 90, 91, 92, 95, 98, 107, 117, 126, 136, 157, 159, 165, 168, 172, 174, 181, 182, 183, 184, 185, 187, 189, 190, 193, 195, 196, 197, 203, 219, 220, 223, 239, 242, 244, 247, 253, 254, 259, 262, 282, 285, 291, 295, 307, 326, 338, 342, 345, 356, 360], "summari": [18, 23, 24, 29, 34, 39, 292, 296, 298, 299, 300, 301, 338, 342, 343, 354, 356, 359, 417], "guid": [18, 24, 26, 27, 28, 30, 36, 239, 242, 246, 254, 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298, 299, 300, 301, 309, 316, 318, 322, 329, 334, 335, 339, 342, 344, 345, 351, 352, 354, 358], "x": [19, 20, 31, 34, 43, 45, 51, 52, 54, 60, 95, 148, 150, 156, 157, 159, 165, 230, 238, 239, 240, 253, 255, 264, 266, 286, 291, 297, 298, 299, 300, 301, 304, 314, 332, 335, 338, 339, 343, 344, 345, 358, 359, 405], "data_i": 19, "y": [19, 20, 24, 31, 34, 230, 231, 233, 234, 238, 286, 291, 297, 298, 299, 300, 301, 339, 344, 345, 353, 359], "pga_x": 19, "peak": [19, 20, 31, 33, 34, 39, 54, 59, 68, 74, 95, 159, 164, 173, 179, 223, 227, 238, 241, 247, 250, 251, 252, 253, 256, 260, 262, 265, 266, 279, 283, 286, 287, 292, 293, 295, 296, 298, 299, 301, 302, 309, 318, 320, 321, 322, 342, 345, 352, 354, 358], "pga_i": 19, "factor": [19, 31, 43, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 148, 207, 230, 248, 249, 251, 266, 278, 291, 292, 294, 295, 299, 301, 331, 339, 342, 347, 350, 351, 352, 356, 357], "gm_file": [19, 31], "aggreg": [20, 23, 24, 27, 29, 31, 33, 233, 235, 244, 259, 280, 315, 344, 345, 405], "hdf": [20, 24, 242, 257, 296], "archiv": [20, 24, 27, 229, 230, 245, 246, 261, 326], "floor": [20, 31, 33, 39, 44, 54, 59, 72, 74, 76, 77, 78, 79, 80, 95, 108, 110, 111, 112, 118, 119, 120, 122, 127, 129, 130, 131, 137, 138, 139, 149, 159, 164, 177, 179, 181, 182, 183, 184, 185, 208, 223, 227, 230, 237, 238, 240, 241, 253, 255, 278, 279, 280, 286, 291, 292, 293, 294, 295, 299, 301, 309, 314, 322, 339, 345, 354, 358], "pfa": [20, 31, 34, 39, 292, 295, 299, 301, 358], "interstori": [20, 31, 65, 170, 314, 358], "drift": [20, 31, 39, 42, 54, 55, 56, 65, 113, 132, 141, 147, 159, 160, 161, 170, 211, 223, 227, 230, 244, 259, 279, 286, 287, 292, 293, 295, 296, 298, 299, 301, 309, 314, 322, 339, 345, 354, 358], "pid": [20, 31, 39, 292, 295, 299, 301, 358], "displac": [20, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 129, 137, 207, 223, 232, 279, 291, 292, 296, 298, 299, 301, 309, 335, 339, 354, 358], 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36, 261, 280, 291, 304, 305, 326, 356], "risk": [22, 31, 32, 33, 34, 230, 231, 233, 234, 238, 240, 245, 247, 253, 255, 262, 285, 296, 301, 302, 338, 345, 352], "view": [22, 24, 25, 29, 30, 219, 220, 223, 224, 225, 228, 231, 238, 239, 244, 253, 259, 266, 282, 284, 291, 306, 321, 339, 360], "illustr": [22, 29, 33, 34, 233, 251, 252, 265, 266, 287, 292, 301, 314, 356, 358], "your": [22, 24, 25, 28, 31, 33, 35, 36, 37, 233, 240, 243, 255, 258, 281, 288, 289, 291, 293, 294, 295, 298, 299, 303, 305, 306, 307, 312, 326, 345, 356, 360], "troubleshoot": [22, 308, 326, 417], "person": [23, 24, 207, 208, 209, 210, 223, 224, 225, 228, 238, 239, 266], "conveni": [23, 306, 314, 347, 350, 351], "small": [23, 31, 33, 34, 76, 77, 79, 80, 83, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 132, 138, 181, 182, 184, 185, 188, 207, 227, 230, 237, 238, 239, 245, 253, 257, 266, 279, 280, 300, 301, 305, 319, 338, 350, 351, 356], "debug": [23, 25, 30], "larger": [23, 241, 244, 259, 279, 280, 300, 333, 334, 343, 344, 356], "instal": [23, 24, 35, 37, 51, 54, 58, 59, 60, 65, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 156, 159, 163, 164, 165, 170, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 223, 224, 225, 228, 239, 254, 257, 290, 326, 327, 356, 417], "rwhale": [23, 24, 26, 27, 31, 33, 237, 278, 284, 326], "zip": [23, 24, 31, 33, 237, 238, 242, 245, 257, 280, 304, 305, 306], "you": [23, 24, 25, 30, 35, 36, 37, 38, 225, 228, 230, 242, 243, 246, 257, 258, 261, 281, 288, 289, 290, 291, 293, 294, 295, 299, 304, 305, 306, 307, 308, 310, 312, 313, 314, 316, 319, 323, 326, 327, 345, 356, 359, 360], "input_data_eq": [23, 24], "templat": [23, 24, 34, 246, 248, 316, 328, 345], "rwhale_config_eq": [23, 31], "remotedir": 23, "desir": [23, 223, 224, 225, 226, 227, 228, 230, 234, 242, 253, 257, 297, 300, 331, 347, 350, 351, 353, 355, 356], "initi": [23, 24, 25, 27, 30, 31, 33, 34, 36, 39, 107, 117, 126, 136, 230, 231, 232, 238, 239, 240, 241, 245, 246, 247, 250, 253, 254, 255, 261, 262, 263, 280, 284, 285, 286, 287, 301, 314, 320, 321, 326, 327, 329, 330, 331, 332, 334, 335, 339, 344, 345, 346, 350, 351, 356, 358, 360, 405, 415], "rwhale_config": [23, 27], "registri": [23, 27, 31, 33], "referencedir": [23, 31, 33], "edp_": 23, "_": [23, 36, 223, 224, 225, 228, 230, 231, 234, 242, 257, 260, 291, 304, 305, 307, 314, 344, 345, 356, 358, 360], "dm_": 23, "dv_": 23, "respect": [23, 34, 223, 230, 231, 232, 233, 234, 238, 239, 244, 245, 253, 257, 259, 266, 280, 282, 292, 298, 299, 301, 329, 330, 331, 345, 347, 356], "workdir": [23, 34, 223, 326], "err": [23, 24, 25, 27, 326, 405], "dl_summari": 23, "log": [23, 24, 25, 26, 29, 223, 224, 225, 227, 228, 237, 294, 299, 300, 301, 315, 317, 326, 336, 339, 341, 342, 343, 345, 352, 360, 373, 405, 413], "txt": [23, 27, 101, 206, 257, 297, 344, 345, 350, 351], "There": [24, 34, 102, 103, 105, 124, 232, 244, 259, 280, 282, 294, 296, 304, 307, 310, 314, 339, 345, 347, 358, 359, 405], "wai": [24, 30, 34, 36, 222, 223, 230, 241, 245, 254, 256, 331, 339, 356], "notebook": [24, 223, 257, 279], "ubuntu": 24, "rwhale_config_remot": 24, "my": [24, 36, 304], "createlaunchertask": 24, "run_rwhal": 24, "ipynb": [24, 257], "On": [24, 36, 230, 237, 253, 300, 301, 304, 307, 331, 333, 343, 356], "appear": [24, 25, 43, 148, 251, 304, 307, 339, 350, 351, 353], "click": [24, 36, 39, 230, 233, 237, 242, 257, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 304, 305, 306, 307, 315, 317, 326, 338, 339, 342, 343, 350, 351, 352, 356, 360], "taken": [24, 233, 239, 247, 252, 287, 301, 333, 352, 357], "frontera": [24, 242, 246, 257, 261, 288, 315, 356], "cell": [24, 49, 50, 154, 155, 257, 291, 339, 356], "navig": [24, 25, 36, 293, 294, 295, 296, 297, 298, 306, 307], "workspac": [24, 237], "bar": [24, 39, 207, 208, 209, 210, 231, 234, 279, 356], "newest": 24, "oldest": 24, "info": [24, 223, 224, 225, 299, 336, 339, 345], "realiz": [24, 27, 31, 33, 223, 227, 229, 230, 231, 233, 234, 252, 257, 264, 265, 279, 280, 286, 287, 289, 292, 296, 297, 299, 300, 311, 312, 326, 328, 333, 336, 338, 339, 342, 343, 345, 352, 354, 355, 357], "hd5": 24, "per": [24, 30, 31, 40, 42, 43, 44, 45, 48, 51, 54, 58, 68, 74, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 101, 147, 148, 149, 150, 153, 156, 159, 163, 173, 179, 187, 188, 189, 190, 191, 193, 195, 196, 197, 206, 223, 224, 225, 227, 230, 238, 239, 241, 242, 245, 257, 266, 278, 291, 299, 301, 314, 332, 339, 341, 343, 347, 352, 353, 405], "launcher": [24, 27], "subsystem": 24, "pleas": [24, 31, 33, 43, 148, 233, 242, 243, 246, 255, 257, 258, 259, 261, 266, 281, 290, 293, 294, 299, 300, 320, 323, 326, 331, 332, 334, 336, 339, 344, 345, 352, 355], "ensur": [24, 31, 33, 36, 232, 238, 239, 241, 244, 247, 248, 253, 254, 256, 259, 261, 282, 288, 305, 306, 307, 314, 327, 341, 343, 346, 347, 358], "pip": [24, 36, 304, 305], "Or": 24, "clone": [24, 35, 36, 37], "com": [24, 36, 101, 206, 230, 238, 239, 253, 278, 342, 417], "ng": 24, "cd": [24, 36], "upgrad": [24, 262, 307, 318], "host": [24, 223, 224, 225, 228, 246, 261], "ask": [24, 246, 253, 261, 305, 326, 352, 355], "agre": 24, "final": [24, 36, 37, 230, 231, 233, 237, 238, 239, 266, 291, 304, 326, 332, 352], "enter": [24, 39, 59, 74, 76, 77, 78, 79, 80, 164, 179, 181, 182, 183, 184, 185, 238, 239, 291, 292, 295, 298, 304, 305, 307, 338, 339, 350, 351, 352, 353, 355, 356, 357], "usernam": 24, "password": [24, 293, 294, 299, 352], "auth": 24, "init": [24, 238, 239], "prompt": [24, 36, 339], "tenant_nam": 24, "keep": [24, 231, 280, 291, 292, 295, 300, 314, 345, 350], "registry_url": 24, "index": [24, 34, 231, 235, 298, 301, 334, 341, 343, 344, 347], "docker": 24, "io": [24, 36], "git_usernam": 24, "git_token": 24, "account": [24, 40, 223, 224, 225, 230, 231, 242, 245, 252, 257, 279, 287, 289, 292, 293, 294, 298, 299, 300, 334, 336, 339, 344, 352, 356, 357, 360], "token": 24, "accept": [24, 30, 231, 264, 291, 328, 332, 344, 346], "polici": [24, 30, 280], "found": [24, 27, 34, 40, 221, 229, 230, 234, 238, 242, 253, 257, 266, 279, 298, 299, 301, 306, 307, 328, 333, 339, 352, 356], "utexa": [24, 356], "usag": [24, 223, 224, 225, 228, 247, 285, 302, 307], "abid": 24, "aup": 24, "conduct": [24, 230, 233, 238, 241, 242, 244, 245, 251, 253, 257, 259, 261, 264, 266, 298, 335, 352, 356, 357], "coc": 24, "improv": [24, 102, 103, 122, 123, 208, 209, 223, 230, 233, 237, 240, 242, 244, 246, 253, 255, 259, 261, 264, 266, 282, 285, 301, 311, 314, 316, 317, 318, 319, 320, 321, 324, 344, 346, 354, 356], "abil": [24, 34, 223, 224, 225, 228, 244, 245, 259, 282, 314, 323], "support": [24, 28, 29, 30, 70, 84, 102, 103, 110, 111, 112, 118, 129, 130, 131, 137, 144, 175, 189, 219, 220, 230, 237, 238, 241, 244, 245, 253, 256, 259, 260, 279, 282, 284, 288, 292, 301, 312, 313, 314, 315, 317, 319, 320, 321, 323, 324, 338, 341, 343, 345, 347, 352, 353, 356, 358, 405], "like": [24, 35, 37, 38, 105, 109, 116, 124, 128, 135, 223, 225, 228, 234, 238, 239, 240, 245, 252, 254, 255, 257, 265, 266, 278, 280, 284, 288, 289, 291, 295, 296, 299, 300, 301, 304, 306, 307, 311, 345, 352, 354, 356, 358, 417], "ip": [24, 70, 175], "address": [24, 33, 223, 237, 238, 239, 253, 259, 264, 304, 305, 324], "funder": 24, "stakehold": [24, 223], "consent": 24, "url": [24, 237, 417], "3dem": 24, "prod": 24, "public": [24, 30, 237, 262, 266, 278, 280, 304, 305, 314], "agaveapi": 24, "co": 24, "araport": 24, "iplantc": 24, "cyvers": 24, "scienc": [24, 219, 223, 224, 225, 228, 239, 244, 245, 249, 259, 282, 284, 353, 417], "irec": 24, "ireceptor": 24, "sd2e": 24, "sgci": 24, "gatewai": 24, "institut": [24, 207, 208, 209, 210, 260, 261, 262, 417], "vdjserver": 24, "vdj": 24, "taccus": 24, "r2d_test_run": 24, "chang": [24, 31, 36, 39, 45, 150, 233, 234, 238, 239, 241, 246, 248, 253, 254, 261, 265, 291, 292, 295, 300, 304, 305, 310, 311, 313, 314, 316, 317, 319, 321, 323, 328, 331, 335, 339, 347, 350, 356, 359], "vim": 24, "editor": 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292, 300, 304, 335, 336, 339, 343, 345, 350, 351, 352, 356, 357, 405], "successfulli": [25, 27, 28, 242, 257, 301, 326, 352, 357, 359], "recommend": [25, 36, 95, 219, 220, 229, 238, 239, 240, 254, 255, 284, 292, 299, 300, 304, 305, 306, 307, 314, 333, 338, 344, 345, 350, 351, 352, 356], "fail": [25, 36, 223, 224, 225, 237, 262, 279, 299, 300, 304, 306, 307, 326, 331, 332, 338, 415], "verifi": [25, 39, 40, 247, 251, 262, 264, 304, 307, 326], "correct": [25, 40, 41, 232, 237, 238, 266, 301, 304, 307, 326, 328], "applicationdata": [25, 31, 33, 34], "incorrect": [25, 326], "serial": [25, 345], "mistak": 25, "unclos": 25, "bracket": [25, 95, 323], "indent": [25, 30], "caus": [25, 30, 34, 56, 59, 68, 123, 161, 164, 173, 209, 222, 240, 255, 264, 266, 279, 291, 292, 293, 294, 295, 304, 306, 326, 338, 347], "print": [25, 27, 31, 34, 39, 237, 317], "rerun": [25, 304], "suppress": [25, 345], "issu": [25, 31, 36, 223, 238, 240, 253, 255, 299, 300, 304, 305, 307, 325, 335], "find": [25, 35, 36, 37, 219, 220, 230, 234, 237, 255, 257, 284, 290, 291, 295, 304, 307, 314, 330, 331, 345, 356], "still": [25, 239, 240, 255, 266, 307], "persist": 25, "question": [25, 243, 246, 248, 258, 261, 280, 281, 290], "forum": [25, 225, 246, 261, 281, 310, 313, 316, 319, 323, 354], "member": [25, 105, 106, 115, 117, 120, 124, 125, 134, 136, 139, 223, 224, 225, 232, 240, 241, 244, 246, 255, 261, 266, 282, 294, 339], "storm": [26, 33, 217, 223, 227, 238, 239, 241, 244, 246, 247, 250, 252, 259, 260, 261, 262, 265, 266, 287, 323, 332], "surg": [26, 217, 227, 239, 241, 244, 246, 247, 250, 251, 252, 259, 261, 262, 265, 266, 287, 332], "fidel": [26, 223, 224, 225, 228, 235, 238, 244, 245, 247, 253, 259, 262, 280, 282, 285, 302, 309, 310, 311, 314, 315, 317, 319, 324, 335, 339, 345, 348], "match": [26, 31, 45, 150, 223, 224, 225, 229, 230, 233, 237, 238, 245, 253, 259, 296, 299, 300, 301, 314, 329, 330, 339, 344, 345, 346, 347, 352, 356], "carri": [27, 36, 234, 237, 241, 356], "termin": [27, 31, 33, 35, 37, 87, 192, 304, 305, 307, 326, 331, 345, 405], "reproduc": [27, 30, 40, 222, 230, 237, 293, 299, 300, 301, 333, 341, 343, 346, 347, 356, 373, 413], "explain": [27, 257, 264, 266, 301, 328, 344, 346, 347, 356], "statement": 27, "success": [27, 30, 35, 36, 37, 39, 253, 307, 359], "16": [27, 31, 33, 34, 36, 46, 47, 49, 50, 51, 52, 54, 71, 95, 144, 151, 152, 154, 155, 156, 157, 159, 176, 223, 233, 234, 238, 239, 241, 245, 249, 253, 262, 264, 266, 293, 294, 300, 304, 339, 352], "62": [27, 31, 33, 34, 234, 241, 339], "64": [27, 238, 241, 280, 304, 305, 307], "85": [27, 230, 237, 238, 241, 245, 251, 253, 262, 339, 356], "skip": [27, 29, 291, 292, 295], "exclud": [27, 29, 59, 164, 207, 208, 209, 210, 238, 253, 298, 344], "93": [27, 31, 34, 56, 161, 230, 241, 253, 264, 266, 285, 345], "createbim": 27, "csv_to_bim": [27, 31, 33, 34], "buildingfil": [27, 33, 34], "earthquake_exampl": 27, "buildings1": 27, "buildingsourcefil": [27, 31, 33, 34], "input_param": [27, 34], "103": [27, 31, 33, 34, 47, 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318, 320, 356], "lblrv": 39, "latin": [39, 291, 292, 295, 309, 315, 318, 320, 322, 334, 343, 352, 356, 357], "hypercub": [39, 291, 292, 295, 309, 315, 318, 320, 322, 334, 343, 352, 356, 357], "portalframesampl": 39, "compar": [39, 40, 230, 234, 251, 255, 261, 264, 266, 280, 292, 295, 296, 299, 300, 301, 305, 344, 345, 373], "nodal": [39, 291, 335, 356, 358], "ksi": 39, "4227": 39, "portal2d": 39, "cline": [39, 339], "bm68elc": 39, "pset": [39, 291, 339], "submit": [39, 237, 242, 257, 288, 289, 290, 326, 360, 417], "pop": [39, 304, 305, 306, 307, 326, 353], "shutil": 39, "subprocess": 39, "pydo": 39, "scipi": [39, 230, 304, 305, 345], "nsampl": 39, "hyper": [39, 299], "cube": 39, "design": [38, 39, 41, 43, 51, 54, 59, 69, 71, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 98, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 144, 148, 156, 159, 164, 174, 176, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 221, 223, 224, 225, 228, 231, 235, 238, 239, 240, 245, 248, 249, 253, 254, 255, 262, 278, 280, 286, 288, 293, 296, 300, 304, 307, 309, 311, 315, 317, 321, 322, 324, 332, 334, 339, 345, 346, 352, 354, 355, 357, 405, 417], "esampl": 39, "ppf": 39, "msampl": 39, "ex1b": 39, "portalframefil": 39, "portalframemodel": 39, "samplenam": 39, "isdir": 39, "rmtree": 39, "modifiedfil": 39, "modifiedmodel": 39, "floormass": 39, "popen": 39, "cwd": 39, "wait": 39, "pfafil": 39, "readlin": [39, 358], "pidfil": 39, "clean": [39, 238, 253], "dev": [39, 223, 227], "against": [39, 223, 224, 225, 228, 238, 240, 253, 255, 262, 264, 266, 304], "agreement": [39, 251, 264, 266, 280, 296, 300], "0836": 39, "6956": 39, "5449": 39, "5487": 39, "x10": 39, "3649": 39, "pseudo": [40, 296, 299, 333, 341, 342, 343, 344, 373, 405, 413], "spectrum": [40, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 224, 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357, 417], "r_": [40, 352, 357], "rupt": 40, "v_": [40, 234, 293, 294, 352, 356, 357], "s30": [40, 234, 293, 294, 352], "400": [40, 47, 91, 152, 196, 299, 300], "uniti": 40, "gmpe": 40, "spectral": [40, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 229, 233, 234, 245, 296, 297, 299, 318, 320, 322, 342, 352, 354, 405], "fall": [40, 55, 160, 238, 240, 255, 262, 279, 280, 300], "plu": [40, 239, 254, 330, 356], "minu": [40, 356], "sigma": [40, 230, 292, 338, 345, 347, 356], "tend": [40, 266, 280], "toward": [40, 244, 266, 282, 357], "vlachos2018predict": 40, "spectra": [40, 229, 233, 234, 292, 297, 339, 352, 357], "20km": 40, "logarithm": [40, 234, 341, 342, 343, 356], "ensembl": [40, 223], "t_n": 40, "carefulli": [41, 316, 356], "frame": [41, 43, 51, 53, 54, 55, 56, 59, 109, 111, 118, 120, 121, 128, 130, 137, 139, 140, 148, 156, 158, 159, 160, 161, 164, 239, 240, 241, 247, 255, 262, 279, 280, 286, 291, 293, 294, 295, 301, 302, 309, 337, 339, 350, 351, 354, 417], "bolt": [42, 115, 134, 147, 279], "connect": [42, 53, 63, 67, 109, 110, 113, 116, 128, 129, 132, 135, 147, 158, 168, 172, 223, 224, 225, 232, 233, 238, 239, 241, 253, 254, 256, 279, 280, 293, 294, 299, 301, 314, 339], "basi": [42, 43, 44, 45, 48, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 147, 148, 149, 150, 153, 234, 239, 246, 253, 254, 261, 279, 345, 405], "fireproof": [42, 43, 44, 147, 148, 149, 232], "reapplic": [42, 43, 44, 147, 148, 149], "greg": [42, 44, 147, 149, 246, 261], "deierlein": [42, 44, 147, 149, 218, 220, 230, 246, 261, 279, 299, 345, 352], "suggest": [42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 58, 59, 60, 63, 65, 67, 68, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 123, 124, 125, 126, 127, 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161], "041": [44, 47, 52, 55, 56, 149, 152, 157, 160, 161], "wuf": [44, 149], "joint": [44, 45, 48, 65, 110, 115, 129, 134, 149, 150, 153, 170, 223, 227, 230, 231, 234, 252, 279, 332, 344], "042": [44, 47, 149, 152], "051": [44, 47, 55, 56, 149, 152, 160, 161], "052": [44, 47, 55, 56, 149, 152, 160, 161], "ebf": [44, 149], "200": [44, 149, 238, 241, 245, 247, 256, 299, 300], "aci": [45, 48, 150, 153], "318": [45, 48, 150, 153], "smf": [45, 150], "conc": [45, 150], "col": [45, 150], "bm": [45, 150, 223, 224, 225], "aci318": [45, 150], "mutual": [45, 101, 150, 206, 231], "exclus": [45, 101, 150, 206], "compliment": [45, 150], "laura": [45, 150, 218, 257, 259, 261, 262, 266], "low": [45, 47, 71, 77, 79, 80, 88, 93, 95, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 150, 152, 176, 182, 184, 185, 193, 198, 218, 223, 230, 232, 238, 247, 254, 257, 259, 262, 266, 278, 284, 285, 322, 323, 332, 341, 343, 345], "mf": [45, 150, 230, 301], "conform": [45, 150, 339], "flexur": [45, 49, 50, 150, 154, 155], "confin": [45, 150, 244, 259, 356], "weak": [45, 95, 150, 238, 239, 253, 254, 266], "mcol": [45, 150], "mbeam": [45, 150], "pu": [45, 150], "6f": [45, 150], "cag": [45, 150], "transvers": [45, 115, 134, 150], "bwd": [45, 150], "d": [45, 70, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 150, 175, 206, 207, 223, 224, 225, 226, 227, 228, 230, 231, 233, 238, 239, 241, 245, 247, 253, 254, 256, 257, 259, 262, 265, 266, 279, 280, 283, 285, 294, 301, 304, 329, 330, 332, 344, 345, 353, 417], "vn": [45, 150], "imf": [45, 150], "failur": [45, 68, 84, 88, 102, 103, 105, 107, 116, 117, 124, 126, 135, 136, 141, 143, 144, 150, 173, 189, 193, 223, 224, 225, 242, 257, 279, 306, 318, 326, 332, 415, 417], "3agf": [45, 150], "omf": [45, 150], "veq": [45, 150], "6agf": [45, 150], "axial": [45, 150], "b1041": [45, 150], "asce6": [45, 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105, 107, 110, 111, 112, 118, 120, 121, 124, 126, 129, 130, 131, 137, 139, 140, 144, 150, 158, 159, 170, 181, 182, 184, 185, 189, 193, 223, 224, 225, 232, 238, 247, 251, 278, 285, 293, 294, 301, 302, 309, 311, 314, 354, 417], "discontinu": [45, 150, 230, 345], "131b": [45, 150], "132a": [45, 150], "132b": [45, 150], "133a": [45, 150], "133b": [45, 150], "convention": [46, 151, 230, 345], "rectangular": [47, 152, 260, 324], "wall": [47, 52, 53, 57, 63, 70, 72, 88, 95, 113, 115, 119, 120, 121, 123, 132, 134, 138, 139, 140, 152, 157, 158, 162, 168, 175, 177, 193, 209, 223, 232, 238, 240, 241, 253, 254, 255, 256, 279, 280, 301], "less": [47, 76, 77, 79, 80, 84, 118, 137, 144, 152, 181, 182, 184, 185, 189, 232, 234, 239, 245, 247, 253, 254, 255, 257, 264, 266, 280, 291, 356], "curtain": [47, 57, 113, 132, 152, 162], "orthogon": [47, 152, 234, 238, 253, 295, 339, 417], "psi": [47, 152], "shorten": [47, 152], "pact": [47, 55, 56, 65, 82, 83, 84, 85, 86, 90, 91, 92, 95, 152, 160, 161, 170, 187, 188, 189, 190, 191, 195, 196, 197], "andrew": [47, 152, 246, 261], "whittak": [47, 152], "sf": [47, 49, 50, 51, 52, 54, 55, 56, 58, 68, 69, 70, 95, 152, 154, 155, 156, 157, 159, 160, 161, 163, 173, 174, 175, 278], "900": [47, 152, 238], "013": [47, 49, 50, 58, 95, 152, 154, 155, 163], "023": [47, 49, 55, 95, 152, 154, 160], "rise": [47, 105, 106, 107, 110, 111, 112, 113, 114, 116, 117, 118, 124, 125, 126, 129, 130, 131, 132, 133, 135, 136, 137, 152, 223, 237, 247, 253, 262, 285, 322, 323, 324], "flang": [47, 152], "033": [47, 55, 56, 152, 160, 161], "053": [47, 55, 56, 152, 160, 161], "062": [47, 152], "063": [47, 152, 356], "071": [47, 55, 152, 160], "072": [47, 55, 152, 160, 262], "073": [47, 152], "081": [47, 55, 152, 160], "082": [47, 55, 152, 160], "083": [47, 55, 152, 160], "091": [47, 55, 152, 160], "greater": [47, 49, 50, 77, 79, 80, 84, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 132, 139, 144, 152, 154, 155, 182, 184, 185, 189, 207, 230, 234, 239, 242, 247, 254, 257, 264, 344, 345, 405], "092": [47, 152], "112": [47, 152, 230, 237, 266], "vg": [48, 153], "vo": [48, 153], "reinf": [48, 153], "qualiti": [30, 48, 51, 52, 54, 58, 59, 60, 63, 65, 67, 68, 69, 70, 71, 74, 76, 77, 78, 79, 80, 82, 83, 84, 85, 86, 88, 90, 91, 92, 95, 98, 153, 156, 157, 159, 163, 164, 165, 168, 170, 172, 173, 174, 175, 176, 179, 181, 182, 183, 184, 185, 187, 188, 189, 190, 191, 193, 195, 196, 197, 203, 230, 238, 239, 240, 253, 254, 255, 301], "56": [48, 95, 153, 238, 241, 253, 339], "63": [48, 153, 234, 241], "89": [48, 56, 153, 161, 237, 238, 241, 253], "can3": [48, 153], "a23": [48, 153], "m84": [48, 153], "mc": [48, 105, 106, 108, 109, 110, 111, 112, 113, 114, 115, 116, 119, 120, 122, 124, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 138, 139, 153, 230, 309, 315, 318, 320, 322, 332, 343, 344], "tension": [48, 93, 115, 134, 153, 198], "ibc": [48, 153, 239, 262, 266, 352], "judgment": [48, 102, 103, 153, 238, 239, 240, 253, 254, 255], "lack": [48, 153, 234, 266, 326], "drop": [48, 84, 88, 153, 189, 193, 261, 291, 292, 314, 330, 332, 333, 338, 339, 349, 352, 355, 360], "capit": [48, 153, 314], "specimen": [48, 56, 153, 161, 231], "partial": [49, 63, 67, 105, 113, 119, 124, 132, 138, 154, 168, 172, 230, 279], "grout": [49, 50, 154, 155], "domin": [49, 50, 154, 155, 230, 234, 238, 247, 253, 262, 266, 284, 285, 334, 344], "foot": [49, 68, 102, 103, 154, 173, 238, 241, 247], "tall": [49, 50, 52, 54, 60, 95, 98, 154, 155, 157, 159, 165, 203, 244, 247, 259, 279, 280, 282, 285], "benson": [49, 50, 154, 155], "shing": [49, 50, 154, 155], "225": [49, 50, 91, 154, 155, 196], "004": [49, 50, 154, 155, 339], "014": [49, 50, 58, 154, 155, 163], "024": [49, 154, 339], "t": [50, 95, 155, 230, 231, 232, 233, 234, 239, 241, 245, 247, 254, 259, 262, 266, 279, 291, 299, 335, 352, 356, 360, 417], "o12": [50, 155], "sheath": [51, 52, 54, 111, 118, 119, 120, 130, 137, 138, 139, 156, 157, 159, 241, 253, 264], "interior": [51, 54, 101, 111, 112, 118, 119, 130, 131, 137, 138, 156, 159, 206, 239, 241, 254, 266, 294, 339], "gypsum": [51, 52, 54, 63, 67, 119, 138, 156, 157, 159, 168, 172, 279, 280], "mil": [51, 54, 156, 159], "osb": [51, 52, 54, 156, 157, 159], "plywood": [51, 54, 108, 111, 118, 119, 120, 127, 130, 137, 138, 139, 156, 159, 279], "overturn": [51, 54, 106, 125, 156, 159, 279], "restraint": [51, 54, 82, 83, 84, 85, 86, 90, 91, 92, 95, 156, 159, 187, 188, 189, 190, 191, 195, 196, 197], "aisi": [51, 54, 156, 159], "screw": [51, 54, 156, 159], "oc": [51, 54, 156, 159], "perimet": [51, 54, 111, 118, 130, 137, 156, 159, 239, 254], "ew": [51, 54, 156, 159], "exterior": [51, 52, 59, 62, 113, 117, 120, 123, 132, 136, 139, 156, 157, 164, 167, 209, 239, 241, 254, 279, 280, 294, 339], "stucco": [51, 52, 54, 119, 120, 138, 139, 156, 157, 159, 279], "strap": [51, 54, 156, 159, 238, 239, 253, 254], "brace": [51, 52, 53, 54, 63, 67, 69, 71, 76, 77, 78, 79, 80, 88, 107, 111, 115, 117, 120, 121, 122, 123, 126, 130, 134, 136, 139, 140, 156, 157, 158, 159, 168, 172, 174, 176, 181, 182, 183, 184, 185, 193, 208, 209], "inch": [51, 52, 54, 70, 71, 76, 77, 79, 80, 156, 157, 159, 175, 176, 181, 182, 184, 185, 239, 253, 254, 296], "attach": [51, 54, 156, 159, 223, 238, 239, 241, 252, 253, 254, 256, 265, 266, 279], "driven": [51, 54, 156, 159, 223, 230, 239, 254, 296, 342, 344], "flush": [51, 54, 156, 159], "surfac": [51, 54, 95, 108, 127, 156, 159, 230, 238, 251, 253, 260, 262, 264, 266, 283, 292, 296, 309, 321, 332, 333, 345, 354, 356], "wallboard": [52, 54, 157, 159], "hold": [52, 54, 157, 159, 230, 238], "ply": [52, 54, 157, 159, 239, 254], "8d": [52, 54, 157, 159, 239, 254, 264], "nail": [52, 54, 157, 159, 238, 239, 253, 254, 264, 266], "df": [52, 54, 157, 159], "2x4": [52, 54, 157, 159], "stud": [52, 54, 63, 119, 138, 157, 159, 168, 240, 255, 279], "feet": [52, 54, 88, 119, 120, 138, 139, 157, 159, 193, 238, 239, 241, 253, 339], "door": [52, 54, 109, 128, 157, 159, 238, 239, 241, 253, 262, 279, 280], "andr": [52, 54, 157, 159], "filiatrault": [52, 54, 157, 159], "chop": [52, 54, 157, 159], "strand": [52, 54, 157, 159], "fiber": [52, 54, 157, 159, 301], "wire": [52, 54, 70, 84, 157, 159, 175, 189], "mesh": [52, 54, 157, 159, 223, 224, 225, 230, 245, 292, 324], "fasten": [52, 54, 157, 159], "stapl": [52, 54, 157, 159], "let": [52, 54, 157, 159, 230, 231, 237, 293, 294, 299, 300, 301, 312], "sill": [52, 54, 157, 159, 234, 279], "opposit": [52, 54, 157, 159], "1x": [52, 54, 157, 159], "2x": [52, 54, 157, 159], "inclin": [52, 54, 157, 159], "recess": [52, 54, 157, 159], "lumber": [52, 54, 119, 138, 157, 159], "x100": [52, 63, 67, 157, 168, 172, 238, 253], "c1011": [52, 157], "lf": [52, 54, 60, 63, 67, 76, 77, 78, 79, 80, 84, 88, 98, 102, 103, 141, 157, 159, 165, 168, 172, 181, 182, 183, 184, 185, 189, 193, 203, 211, 230, 301], "rc": [53, 158], "composit": [53, 68, 107, 116, 117, 126, 135, 136, 158, 173], "shearwal": [53, 158], "slab": [53, 110, 129, 158, 240, 241, 255], "masonri": [53, 61, 108, 113, 119, 121, 127, 132, 138, 140, 158, 166, 223, 238, 247, 251, 253, 278, 279, 280, 285], "cold": [53, 54, 81, 158, 159, 186], "light": [53, 54, 70, 72, 106, 109, 121, 122, 125, 128, 140, 142, 158, 159, 175, 177, 207, 208, 209, 210, 239, 266, 279, 356], "b1061": [54, 159], "b1071": [54, 159], "201a": [54, 159], "precast": [54, 65, 113, 121, 132, 140, 159, 170], "plane": [54, 56, 109, 117, 128, 136, 159, 161, 238, 253, 295, 356], "deform": [54, 105, 124, 159, 223, 232, 318, 321], "x13": [54, 159], "volum": [54, 84, 101, 159, 189, 206, 330], "201b": [54, 159], "anchorag": [54, 82, 83, 84, 85, 86, 90, 91, 92, 108, 109, 122, 123, 127, 128, 159, 187, 188, 189, 190, 191, 195, 196, 197, 208, 209, 262, 279], "capac": [54, 82, 83, 84, 85, 86, 90, 91, 92, 110, 113, 116, 129, 132, 135, 159, 187, 188, 189, 190, 191, 195, 196, 197, 247, 261, 262, 285, 286], "midris": [55, 160], "stick": [55, 160], "monolith": [55, 56, 65, 160, 161, 170], "lamin": [55, 56, 120, 139, 160, 161], "glass": [55, 56, 95, 160, 161, 238, 239, 254, 279, 304], "insul": [55, 56, 160, 161, 241], "dual": [55, 56, 116, 135, 160, 161], "pane": [55, 56, 160, 161, 279], "asymmetr": [55, 160], "unequ": [55, 160], "igu": [55, 56, 160, 161], "anneal": [55, 56, 160, 161], "mm": [55, 56, 160, 161], "inner": [55, 56, 160, 161], "outer": [55, 56, 160, 161, 239], "lam": [55, 56, 120, 139, 160, 161], "030": [55, 56, 160, 161], "pvb": [55, 56, 160, 161], "clearanc": [55, 56, 160, 161], "sealant": [55, 56, 160, 161], "dry": [55, 56, 68, 160, 161, 173, 245], "ssg": [55, 160], "wet": [55, 56, 76, 77, 78, 79, 80, 160, 161, 181, 182, 183, 184, 185, 245], "dispers": [55, 65, 68, 82, 83, 84, 85, 86, 90, 91, 92, 95, 160, 170, 173, 187, 188, 189, 190, 191, 195, 196, 197, 279, 287], "lead": [55, 105, 113, 124, 132, 160, 230, 233, 234, 266, 301, 306, 314, 352, 356], "casualti": [55, 160, 223], "034": [55, 56, 160, 161], "035": [55, 160], "036": [55, 160], "037": [55, 160], "038": [55, 160, 417], "039": [55, 160], "040": [55, 160], "temper": [55, 56, 160, 161, 231], "seam": [55, 160], "054": [55, 56, 160, 161], "polish": [55, 160], "heat": [55, 77, 160, 182, 238], "strengthen": [55, 160], "hs": [55, 160, 229, 238], "symmetr": [55, 56, 160, 161], "060": [55, 160], "201": [55, 160], "vhbtm": [55, 160], "sgttm": [55, 160], "did": [55, 56, 160, 161, 245, 262, 326], "intent": [55, 56, 160, 161, 238, 247, 253, 262, 285], "none": [56, 161, 237, 238, 239, 242, 253, 254, 257, 279, 280, 299, 300, 309, 315, 317, 318, 320, 336, 339, 342, 345, 405], "planar": [56, 161, 291], "corner": [56, 161, 238, 253, 279, 280, 296, 304, 307, 342, 356], "cond": [56, 161], "combin": [56, 82, 83, 84, 85, 86, 90, 91, 92, 115, 134, 161, 187, 188, 189, 190, 191, 195, 196, 197, 223, 230, 232, 241, 247, 251, 252, 256, 262, 265, 280, 292, 314, 329, 332, 352, 353, 356], "short": [56, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 161, 207, 237, 238, 239, 304, 307], "crack": [56, 107, 117, 126, 136, 161, 279, 280], "055": [56, 161], "056": [56, 161], "82": [56, 161, 238, 241], "storefront": [57, 162], "tile": [58, 67, 68, 70, 88, 163, 172, 173, 175, 193, 279, 280], "secur": [58, 95, 163, 223, 304, 307], "ubc94": [58, 163], "squar": [58, 68, 119, 120, 138, 139, 163, 173, 223, 224, 225, 228, 230, 234, 238, 252, 265, 280, 283, 287, 292, 300, 315, 330, 331, 338, 345, 347, 352, 357, 405], "ubc": [58, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 163], "clai": [58, 163], "unsecur": [58, 95, 163], "unreinforc": [59, 60, 121, 140, 164, 165], "industri": [59, 71, 121, 140, 164, 176, 207, 208, 209, 210, 223, 237, 238, 245, 247, 254, 262, 278, 285], "firebox": [59, 164], "veneer": [59, 119, 123, 138, 164, 209, 279], "ornament": [59, 164], "elev": [59, 75, 122, 123, 164, 180, 208, 209, 223, 238, 239, 240, 241, 245, 253, 255, 279, 280], "rebuild": [59, 164], "restor": [59, 164, 360], "jurisdict": [59, 164], "prohibit": [59, 164, 288, 332], "portion": [59, 164, 238, 253, 279, 300, 347], "metal": [59, 63, 84, 95, 108, 109, 112, 115, 118, 121, 127, 128, 131, 134, 137, 140, 164, 168, 189, 207, 208, 209, 210, 238], "flue": [59, 164], "chase": [59, 164], "fireplac": [59, 164], "toppl": [59, 164, 279, 280], "adjac": [59, 164, 238, 240, 255, 356], "unbrac": [60, 88, 165, 193], "approxim": [60, 65, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 165, 170, 207, 230, 231, 232, 237, 238, 244, 245, 247, 259, 262, 279, 282, 285, 286, 287, 296, 299, 300, 314, 316, 319, 330, 331, 332, 333, 344, 347, 356], "3ft": [60, 165], "10ft": [60, 165], "segment": [60, 76, 77, 78, 79, 80, 84, 88, 115, 134, 145, 165, 181, 182, 183, 184, 185, 189, 193, 215, 229, 238, 253], "cover": [61, 68, 108, 119, 127, 138, 143, 166, 173, 223, 230, 238, 239, 240, 241, 245, 253, 254, 255, 262, 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110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 230, 233, 238, 239, 241, 253, 254, 256, 264, 323, 324, 338, 339], "relat": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 232, 234, 239, 241, 246, 247, 251, 254, 261, 262, 280, 290, 292, 326, 333, 417], "veri": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 128, 132, 207, 230, 232, 234, 238, 253, 257, 280, 317, 356], "influenc": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 230, 239, 248, 251, 252, 257, 264, 265, 280, 287, 291, 292, 295, 347], "wu": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 245, 246, 318, 320], "ceu": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207], "attenu": [105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 207, 223, 234, 417], "effect": [105, 106, 107, 108, 109, 110, 111, 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