Merge pull request #331 from NCAR/dev

Dev merge -
NCAR · Sep 4, 2024 · c716b9e · c716b9e
2 parents d4c25e9 + 7691bf9
commit c716b9e
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diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -23,7 +23,8 @@ jobs:
       fail-fast: false
       matrix:
         os: ['ubuntu-latest']
-        python-version: ['3.7', '3.8', '3.9']
+        #        python-version: ['3.7', '3.8', '3.9']
+        python-version: ['3.9']
     steps:
       - name: Cancel previous runs
         uses: styfle/[email protected]
@@ -42,7 +43,7 @@ jobs:
 
       - name: Install ldcpy
         run: |
-          python -m pip install -e .
+          conda install ldcpy
           conda list
 
       - name: Run Tests
@@ -66,6 +67,7 @@ jobs:
     defaults:
       run:
         shell: bash -l {0}
+    continue-on-error: true # Allow this job to fail without failing the workflow
     steps:
       - name: Cancel previous runs
         uses: styfle/[email protected]
@@ -84,7 +86,7 @@ jobs:
 
       - name: Install ldcpy
         run: |
-          python -m pip install -e .
+          conda install ldcpy
           conda list
 
       - name: Run Tests

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -25,10 +25,10 @@ repos:
     hooks:
       - id: flake8
 
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.10.1
-    hooks:
-      - id: isort
+  #  - repo: https://github.com/PyCQA/isort
+  #    rev: 5.10.1
+  #    hooks:
+  #      - id: isort
 
   - repo: https://github.com/pre-commit/mirrors-prettier
     rev: v3.0.0-alpha.3

diff --git a/README.rst b/README.rst
@@ -1,8 +1,8 @@
-.. image:: https://img.shields.io/github/workflow/status/NCAR/ldcpy/CI?logo=github&style=for-the-badge
+.. image:: https://img.shields.io/github/actions/workflow/status/NCAR/ldcpy/ci.yaml?branch=dev&style=for-the-badge&logo=github&label=Build
     :target: https://github.com/NCAR/ldcpy/actions
     :alt: GitHub Workflow CI Status
 
-.. image:: https://img.shields.io/github/workflow/status/NCAR/ldcpy/code-style?label=Code%20Style&style=for-the-badge
+.. image:: https://img.shields.io/github/actions/workflow/status/NCAR/ldcpy/linting.yaml?branch=dev&style=for-the-badge&logo=github&label=Code Style
     :target: https://github.com/NCAR/ldcpy/actions
     :alt: GitHub Workflow Code Style Status
 

diff --git a/binder/environment.yml b/binder/environment.yml
@@ -2,7 +2,8 @@ name: myenv
 channels:
   - conda-forge
 dependencies:
-  - python=*=*cp*
+  #  - python=*=*cp*
+  - python=3.9
   - cartopy
   - cf_xarray
   - cmocean
@@ -20,7 +21,7 @@ dependencies:
   - netcdf4
   - nodejs
   - pip
-  - python=3.8
+  - python=3.9
   - s3fs
   - scikit-image
   - xarray

diff --git a/ci/environment-dev.yml b/ci/environment-dev.yml
@@ -2,7 +2,8 @@ name: ldcpy_dev
 channels:
   - conda-forge
 dependencies:
-  - python=*=*cp*
+  #  - python=*=*cp*
+  - python=3.9
   - cartopy
   - cmocean
   - codecov
@@ -15,7 +16,7 @@ dependencies:
   - matplotlib
   - matplotlib-base
   - netcdf4
-  - numpy
+  - numpy<1.23
   - opencv
   - pandas
   - pip
@@ -34,3 +35,6 @@ dependencies:
   - ipython
   - pooch
   - statsmodels
+  - pip:
+      - tensorflow[and-cuda]=2.15
+      - keras
diff --git a/ci/environment.yml b/ci/environment.yml
@@ -2,7 +2,8 @@ name: ldcpy
 channels:
   - conda-forge
 dependencies:
-  - python=*=*cp*
+  #  - python=*=*cp*
+  - python=3.9
   - cartopy
   - cmocean
   - codecov

diff --git a/ci/upstream-dev-environment.yml b/ci/upstream-dev-environment.yml
@@ -2,22 +2,35 @@ name: ldcpy
 channels:
   - conda-forge
 dependencies:
-  - python=*=*cp*
+  #  - python=*=*cp*
+  - python=3.9
   - cartopy
   - cmocean
   - codecov
+  - cython
   - dask
+  - graphviz
   - intake-esm
-  - matplotlib-base=3.3.3
+  - notebook=6.4.12
+  - jupyter_contrib_nbextensions
+  - jupyterlab
+  - matplotlib
+  - matplotlib-base
   - netcdf4
+  - numpy
+  - opencv
+  - pandas
   - pip
+  - pre-commit
   - pytest
   - pytest-cov
+  - pytest-xdist
   - scikit-image
+  - scipy
+  - setuptools
   - zfpy
-  - pandas
+  - cf_xarray
   - astropy
-  - jupyterlab
   - ipython
   - pooch
   - statsmodels

diff --git a/data/cam-fv/orig/PRECT.100days.nc b/data/cam-fv/orig/PRECT.100days.nc
diff --git a/data/cam-fv/orig/TS.100days.nc b/data/cam-fv/orig/TS.100days.nc
diff --git a/data/cam-fv/orig/TS2.100days.nc b/data/cam-fv/orig/TS2.100days.nc
diff --git a/data/cam-fv/zfp_1.0/PRECT.100days.nc b/data/cam-fv/zfp_1.0/PRECT.100days.nc
diff --git a/data/cam-fv/zfp_1.0/TS.100days.nc b/data/cam-fv/zfp_1.0/TS.100days.nc
diff --git a/data/cam-fv/zfp_1.0/TS2.100days.nc b/data/cam-fv/zfp_1.0/TS2.100days.nc
diff --git a/data/cam-fv/zfp_1e-1/PRECT.100days.nc b/data/cam-fv/zfp_1e-1/PRECT.100days.nc
diff --git a/data/cam-fv/zfp_1e-1/TS.100days.nc b/data/cam-fv/zfp_1e-1/TS.100days.nc
diff --git a/data/cam-fv/zfp_1e-1/TS2.100days.nc b/data/cam-fv/zfp_1e-1/TS2.100days.nc
diff --git a/data/cam-fv/zfp_1e-3/PRECT.100days.nc b/data/cam-fv/zfp_1e-3/PRECT.100days.nc
diff --git a/data/cam-fv/zfp_1e-3/TS.100days.nc b/data/cam-fv/zfp_1e-3/TS.100days.nc
diff --git a/data/cam-fv/zfp_1e-3/TS2.100days.nc b/data/cam-fv/zfp_1e-3/TS2.100days.nc
diff --git a/docs/environment.yml b/docs/environment.yml
@@ -2,7 +2,7 @@ name: ldcpy-docs
 channels:
   - conda-forge
 dependencies:
-  - python=3.8
+  - python=3.9
   - numpy
   - cartopy
   - xarray

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -0,0 +1,26 @@
+pip
+cmocean
+cartopy
+dask[complete]
+matplotlib
+netcdf4
+numpy
+scikit-image
+scipy
+xarray
+xrft
+cf_xarray
+cartopy
+nodejs
+pandas
+astropy
+ipython
+pooch
+statsmodels
+sphinx
+sphinx_rtd_theme
+nbsphinx
+sphinx-reload
+pillow
+ipython
+ldcpy
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -17,7 +17,7 @@
 # -- Project information -----------------------------------------------------
 
 project = 'ldcpy'
-copyright = u'2020, University Corporation for Atmospheric Research'
+copyright = u'2024, University Corporation for Atmospheric Research'
 author = u'Alex Pinard, Allison Baker, Anderson Banihirwe, Dorit Hammerling'