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NCBI data loader execution warning and error #218

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Tenncp opened this issue Sep 24, 2019 · 0 comments
Open

NCBI data loader execution warning and error #218

Tenncp opened this issue Sep 24, 2019 · 0 comments

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@Tenncp
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Tenncp commented Sep 24, 2019

After running the NCBI Eutils Accesssion loader with "assembly" selected and NCBI accession number 91111, the job is now in the queue When executing the job I get the following warnings and error.

unt(): Parameter must be an array or an object that implements Countable in EUtilsAssemblyParser->getFTPData() (line 206 of /home/cphill/drupal7/sites/all/modules/tripal_eutils/includes/xml_parsers/EUtilsAssemblyParser.inc).
Notice: Trying to get property 'cvterm_id' of non-object in EUtilsRepository->createXMLProp() (line 317 of /home/cphill/drupal7/sites/all/modules/tripal_eutils/includes/repositories/EUtilsRepository.inc).
Recoverable fatal error: Object of class TripalJob could not be converted to string in tripal_report_error() (line 135 of /home/cphill/drupal7/sites/all/modules/tripal/tripal/api/tripal.notice.api.inc).

@Ferrisx4 Ferrisx4 mentioned this issue Oct 3, 2019
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