adding track to jbrowse

[amcooksey]

This doesn't include metadata. We will need to add a metadata line(s) to the json info.

mkdir scaffold/analyses/Pectinophora-gossypiella-Variants_2023-09-14_v1.0
cp SRR18576017_filtered.vcf.gz SRR18576017_filtered.vcf.gz.tbi scaffold/analyses/Pectinophora-gossypiella-Variants_2023-09-14_v1.0

echo "{
"urlTemplate" : "analyses/Pectinophora-gossypiella-Variant_2023-09-14_v1.0/SRR18576017_filtered.vcf.gz",
"type" : "HTMLVariants",
"category" : "Variants",
"storeClass" : "JBrowse/Store/SeqFeature/VCFTabix",
"key" : "Pectinophora gossypiella_SRR18576017_variants",
"label" : "Pectinophora gossypiella_SRR18576017_variants"
}" > SRR18576017.json

singularity exec -B /project/nal_genomics/organism_onboarding/pecgos/output/other_species/pecgos/ilPecGoss1.1/jbrowse/data/:/jbrowse/data /project/nal_genomics/shared_programs/jbrowse_1.16.11--pl5321h9f5acd7_5.sif /usr/local/opt/jbrowse/bin/add-track-json.pl SRR18576017.json /jbrowse/data/trackList.json