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resuscitate genomics-workspace.cwl? #134

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mpoelchau opened this issue Apr 6, 2022 · 2 comments
Open

resuscitate genomics-workspace.cwl? #134

mpoelchau opened this issue Apr 6, 2022 · 2 comments

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@mpoelchau
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Chris' idea for making genomics-workspace.cwl work on the servers:

  • include activating the i5k environment in cwl

In terms of testing the above idea before full implementation:

  • make a shell script that activates the gw environment with manage.py
  • runs a manage.py example command
  • deactivates the gw env
    That should give us an idea whether this concept will work in cwl env.
@mpoelchau
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@mpoelchau will add info from email train to this issue. We think the conclusion was to add cwl to the i5k environment.

@mpoelchau
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@childers and @ZhiXuanLai will review @HsiuKangHuang 's previous code together and will determine what updates (if any) need to be made). https://github.com/NAL-i5K/Organism_Onboarding/tree/master/flow_genomicsWorkspace

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