pyproject.toml

[tool.poetry]
name = "microscopemetrics-omero"
version = "0.2.0"
description = "A package to compute metrics on OMERO images using micrsocope-metrics"
authors = [
    "Julio Mateos Langerak <julio.mateos-langerak@igh.cnrs.fr>"
]
license = "GPL-3.0-only"
readme = "README.md"
keywords = ["microscopy", "metrology"]

[tool.pytest.ini_options]
#addopts = "--cov"
testpaths = [
    "tests"
]
filterwarnings = [
    # action, message, category, module, lineno
    "default::DeprecationWarning:__main__",
    "ignore::DeprecationWarning",
    "ignore::PendingDeprecationWarning",
    "ignore::ImportWarning",
    "ignore::ResourceWarning",

#    'ignore::DeprecationWarning:omero.*:',
#    'ignore::DeprecationWarning:omero_ext.*:',
#    'ignore::DeprecationWarning:Ice.*:',
#    'ignore::DeprecationWarning:Ice_Current_ice.*:',
#    'ignore::DeprecationWarning:Ice_Properties_ice.*:',
#    'ignore::DeprecationWarning:omero_Scripts_ice.*:',
#    'ignore::DeprecationWarning:cli.*:',
#    'ignore::DeprecationWarning:omero_ServerErrors_ice.*:',
#    'ignore::DeprecationWarning:omero_cmd_Mail_ice.*:',
#    'ignore::DeprecationWarning:omero_API_ice.*:',
#    'ignore::DeprecationWarning:omero_Tables_ice.*:',
#    'ignore::DeprecationWarning:omero_api_*.*:',
#    'ignore::DeprecationWarning:omero/plugins/import.*:',
#    'ignore:.*invalid escape sequence:DeprecationWarning',
#    'ignore:.*the imp module is deprecated in favour of importlib:DeprecationWarning',
]

[tool.poetry.dependencies]
python = ">=3.8 <=3.11"
#microscopemetrics = "0.2.2"
microscopemetrics = {git = "https://github.com/juliomateoslangerak/microscope-metrics.git", branch = "main"}
omero-py = "^5"
pyyaml = "^6"

[tool.poetry.group.test.dependencies]
pytest = "^6"
#pytest-cov = "^4.0.0"  # pytest-cov seems it have issues with pycharm debugging
tox = "^3"
ezomero = "^1"

[tool.poetry.group.dev.dependencies]
black = "^23"
pre-commit = "3.5"
poetry = "^1"
isort = "^5"

[build-system]
requires = ["poetry-core=1.7.0"]
build-backend = "poetry.core.masonry.api"