From e4be06c62e2bd73cf797d53dfc1867a1b372fce1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Cl=C3=A9ment=20H=2E=20Benedetti?=
 <clement.h.benedetti@gmail.com>
Date: Wed, 20 Nov 2024 09:39:52 +0100
Subject: [PATCH] Starting GUI linking

---
 src/microglia_analyzer/_widget.py    | 12 ++----------
 src/microglia_analyzer/models.json   | 10 ++++++++--
 src/microglia_analyzer/qt_workers.py | 20 ++++++++++++++++++++
 3 files changed, 30 insertions(+), 12 deletions(-)
 create mode 100644 src/microglia_analyzer/qt_workers.py

diff --git a/src/microglia_analyzer/_widget.py b/src/microglia_analyzer/_widget.py
index a05473b..9eb8686 100644
--- a/src/microglia_analyzer/_widget.py
+++ b/src/microglia_analyzer/_widget.py
@@ -117,11 +117,6 @@ def segment_microglia_panel(self):
         self.segment_microglia_group = QGroupBox("Segmentation")
         layout = QVBoxLayout()
 
-        # Dropdown menu to choose a model
-        self.model_selector = QComboBox()
-        self.model_selector.addItem("---")
-        layout.addWidget(self.model_selector)
-
         # Minimal area of a microglia
         h_layout = QHBoxLayout()
         self.minimal_area_label = QLabel("Min area (µm²):")
@@ -216,9 +211,6 @@ def select_image(self):
             return
         self.open_image(full_path)
 
-    def apply_calibration(self):
-        pass
-
     def proba_threshold_update(self):
         self.proba_value_label.setText(f"{self.probability_threshold_slider.value()}%")
 
@@ -285,7 +277,7 @@ def open_image(self, image_path):
             self.viewer.layers[_IMAGE_LAYER_NAME].data = data
         else:
             self.viewer.add_image(data, name=_IMAGE_LAYER_NAME, colormap='green')
-        # self.mam.load_image(image_path)
+        self.mam.set_input_image(data)
         
     
     def convert_to_optimal_unit(self, size, unit):
@@ -318,4 +310,4 @@ def set_calibration(self, size, unit):
             layer.scale = (size, size)
         self.pixel_size_label.setText(f"Pixel size: {size:.2f} {unit}")
         self.viewer.scale_bar.visible = True
-        # self.mam.set_calibration(size, unit)
\ No newline at end of file
+        self.mam.set_calibration(size, unit)
\ No newline at end of file
diff --git a/src/microglia_analyzer/models.json b/src/microglia_analyzer/models.json
index 1673e5a..713022c 100644
--- a/src/microglia_analyzer/models.json
+++ b/src/microglia_analyzer/models.json
@@ -1,4 +1,10 @@
 {
-    "µnet" : "https://dev.mri.cnrs.fr/attachments/download/3574/%C2%B5net.zip",
-    "µyolo": "https://dev.mri.cnrs.fr/attachments/download/3575/%C2%B5yolo.zip"
+    "µnet" : {
+        "url": "https://dev.mri.cnrs.fr/attachments/download/3574/%C2%B5net.zip",
+        "version": 208
+    },
+    "µyolo": {
+        "url": "https://dev.mri.cnrs.fr/attachments/download/3575/%C2%B5yolo.zip",
+        "version": 51
+    }
 }
\ No newline at end of file
diff --git a/src/microglia_analyzer/qt_workers.py b/src/microglia_analyzer/qt_workers.py
new file mode 100644
index 0000000..5f32321
--- /dev/null
+++ b/src/microglia_analyzer/qt_workers.py
@@ -0,0 +1,20 @@
+from qtpy.QtCore import QObject
+from PyQt5.QtCore import pyqtSignal
+
+class QtSegmentProtoplasts(QObject):
+    
+    finished = pyqtSignal()
+    update   = pyqtSignal(str, int, int)
+
+    def _probe_model(self, model):
+        pass
+
+    def __init__(self, pbr, mga):
+        super().__init__()
+        self.pbr = pbr
+        self.mga = mga
+
+    def run(self):
+        self.mga.find_traps()
+        self.mga.process_patches()
+        self.finished.emit()
\ No newline at end of file