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Error in ConverToHDF5 #75

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afcamilo opened this issue May 24, 2024 · 0 comments
Open

Error in ConverToHDF5 #75

afcamilo opened this issue May 24, 2024 · 0 comments

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@afcamilo
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Hello everyone.
Since a few years ago we use the MOHID model, a few days ago we installed MOHID on a Linux machine, based on the information in the repository (update), however, when using ConvertToFDF5 for an interpolation process in the water column an error occurs that was not observed in previous processes (presented below).

Reading temperature fields
HDF5-DIAG: Error detected in HDF5 (1.8.23) thread 0:
#000: H5A.c line 626 in H5Aread(): unable to read attribute
major: Attribute
minor: Read failed
#1: H5Aint.c line 661 in H5A_read(): unable to convert between src and dst datatypes
major: Attribute
minor: Feature is unsupported
#2: H5T.c line 4649 in H5T_path_find(): no appropriate function for conversion path
major: Datatype
minor: Unable to initialize object
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
libc.so.6 000014B20B85B050 Unknown Unknown Unknown
libiomp5.so 000014B20BB7F07A Unknown Unknown Unknown
libiomp5.so 000014B20BB7EEB0 Unknown Unknown Unknown
libiomp5.so 000014B20BB7ECC3 Unknown Unknown Unknown
libiomp5.so 000014B20BB7FE7D Unknown Unknown Unknown
libiomp5.so 000014B20BB742A4 Unknown Unknown Unknown
libiomp5.so 000014B20BB6EDB3 Unknown Unknown Unknown
libiomp5.so 000014B20BB6F727 Unknown Unknown Unknown
libifcoremt.so.5 000014B20D732044 for_allocate_hand Unknown Unknown
ConvertToHDF5.exe 00000000004C5FA9 Unknown Unknown Unknown
ConvertToHDF5.exe 00000000004B3F6E Unknown Unknown Unknown
ConvertToHDF5.exe 00000000004AC780 Unknown Unknown Unknown
ConvertToHDF5.exe 00000000004A27A7 Unknown Unknown Unknown
ConvertToHDF5.exe 0000000000B6E050 Unknown Unknown Unknown
ConvertToHDF5.exe 0000000000B6ED1B Unknown Unknown Unknown
ConvertToHDF5.exe 0000000000B6D09E Unknown Unknown Unknown
ConvertToHDF5.exe 000000000040616D Unknown Unknown Unknown
libc.so.6 000014B20B84624A Unknown Unknown Unknown
libc.so.6 000014B20B846305 __libc_start_main Unknown Unknown
ConvertToHDF5.exe 0000000000406081 Unknown Unknown Unknown

The working methodology was as follows:

  1. Download information from HYCOM for 40 levels in the vertical.
  2. The information was interpolated on a bathymetry of interest and then an HDF5 file was created (we used MATLAB).
  3. The created HDF5 file was delivered to CONVERTHDF5 for interpolation considering as parent bathymetry and new bathymetry the one used in item 2. In addition, the geometry file was provided (attached GEOMETRY).
  4. The process was executed and the HDF5 file was obtained interpolated to the domain of interest based on the data and geometry information.

At present we do not get this result, it would be very useful for us a recommendation. Thank you.

HYCOMGeometry.txt
MOHIDGeometry.txt

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