From bc9a4c3a09aa7114dcb1db06ee34b37c7955b12a Mon Sep 17 00:00:00 2001 From: SuShiAtGit <35692160+SuShiAtGit@users.noreply.github.com> Date: Thu, 21 Mar 2024 18:22:40 +0100 Subject: [PATCH] Update README.md --- README.md | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 7f78c88..54b3faf 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ The main steps of the workflow involve: 1. Mapping each barcode to insertion location in the genome. 2. Profiling barcode abundances across samples. 3. Mutant fitness analyses. -4. Exploratory analysis using [mBARq web app](https://mbarq-app.herokuapp.com/) +4. Exploratory analysis using [mBARq web app]([https://mbarq-app.herokuapp.com/](https://microbiomics.io/tools/mbarq-app/)) ## Installation: @@ -62,7 +62,17 @@ mbarq analyze -i -s -c --treatmen ## Documentation and Walkthrough: -Please see [mBARq documentation](https://mbarq.readthedocs.io/en/latest/) for detailed instructions and tutorials +Please see [mBARq documentation](https://mbarq.readthedocs.io/en/latest/) for detailed instructions and tutorials. + +If you use mBARq, please cite: + +> **mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations** +> +> Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M Field, Lilith Feer, Bidong D Nguyen, Benjamin Daniel, Wolf-Dietrich Hardt, Julia A Vorholt, Shinichi Sunagawa# +> > +> _Bioinformatics_ (2024) +> +> doi: [10.1093/bioinformatics/btae078](https://doi.org/10.1093/bioinformatics/btae078) ## Data and code to reproduce mBARq manuscript figures