From ab96114ac186a5671aeedb3292ea015ab43eef6e Mon Sep 17 00:00:00 2001
From: ASintsova <ansintsova@biol.ethz.ch>
Date: Thu, 11 Apr 2024 15:29:34 +0200
Subject: [PATCH] Update ci-with-conda.yml

---
 .github/workflows/ci-with-conda.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/ci-with-conda.yml b/.github/workflows/ci-with-conda.yml
index 8bb75e9..5441841 100644
--- a/.github/workflows/ci-with-conda.yml
+++ b/.github/workflows/ci-with-conda.yml
@@ -28,6 +28,7 @@ jobs:
         auto-activate-base: false
     - name: test conda
       run: |
+        conda activate mbarq
         conda info
         conda list
       # run: |
@@ -37,9 +38,11 @@ jobs:
       run: |
         #conda install -c conda-forge mamba python==3.10
         #conda env update --file mbarq_environment.yaml --name base
+        conda activate mbarq
         pip install .
     - name: Lint with flake8
       run: |
+        conda activate mbarq
         conda install flake8
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
@@ -47,5 +50,6 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
+        conda activate mbarq
         conda install pytest
         pytest