From 021bde5b0af8106ca2637f191651b1752098e7bb Mon Sep 17 00:00:00 2001
From: ASintsova <ansintsova@biol.ethz.ch>
Date: Thu, 11 Apr 2024 15:52:52 +0200
Subject: [PATCH] Update ci-with-conda.yml

---
 .github/workflows/ci-with-conda.yml | 16 ++--------------
 1 file changed, 2 insertions(+), 14 deletions(-)

diff --git a/.github/workflows/ci-with-conda.yml b/.github/workflows/ci-with-conda.yml
index 7084b89..f95a4ea 100644
--- a/.github/workflows/ci-with-conda.yml
+++ b/.github/workflows/ci-with-conda.yml
@@ -1,4 +1,4 @@
-name: Python Package using Conda
+name: Python Package using conda environment
 
 on:
   push:
@@ -17,14 +17,9 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    # - name: Set up Python 3.10
-    #   uses: actions/setup-python@v3
-    #   with:
-    #     python-version: '3.10'
     - name: Add conda 
       uses: conda-incubator/setup-miniconda@v3
       with:
-        #auto-update-conda: true
         activate-environment: mbarq
         environment-file: mbarq_environment.yaml
         python-version: '3.10'
@@ -33,17 +28,11 @@ jobs:
       run: |
         conda info
         conda list
-      # run: |
-      #   # $CONDA is an environment variable pointing to the root of the miniconda directory
-      #   echo $CONDA/bin >> $GITHUB_PATH
-    - name: Install dependencies
+    - name: Install mbarq
       run: |
-        #conda install -c conda-forge mamba python==3.10
-        #conda env update --file mbarq_environment.yaml --name base
         pip install .
     - name: Lint with flake8
       run: |
-        #conda activate mbarq
         conda install flake8
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
@@ -51,6 +40,5 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        conda activate mbarq
         conda install pytest
         pytest