ci-with-conda.yml

name: Python Package using Conda

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 5

    steps:
    - uses: actions/checkout@v3
    # - name: Set up Python 3.10
    #   uses: actions/setup-python@v3
    #   with:
    #     python-version: '3.10'
    - name: Add conda 
      uses: conda-incubator/setup-miniconda@v3
      with:
        auto-update-conda: true
        python-version: '3.10'
        activate-environment: mbarq
        environment-file: mbarq_environment.yaml
        auto-activate-base: false
    - name: test conda
      run: |
        conda info
        conda list
      # run: |
      #   # $CONDA is an environment variable pointing to the root of the miniconda directory
      #   echo $CONDA/bin >> $GITHUB_PATH
    - name: Install dependencies
      run: |
        #conda install -c conda-forge mamba python==3.10
        #conda env update --file mbarq_environment.yaml --name base
        pip install .
    - name: Lint with flake8
      run: |
        conda install flake8
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with pytest
      run: |
        conda install pytest
        pytest