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pack data with missing value #143

pack data with missing value

pack data with missing value #143

Workflow file for this run

name: build-test-XIOS
on:
push:
branches:
- main
pull_request:
jobs:
build_test:
name: build test
runs-on: ubuntu-latest
strategy:
matrix:
version: [XIOS/trunk@2252, XIOS2/trunk, XIOS3/trunk]
steps:
# Check out repository branch
- uses: actions/checkout@v4
- name: Install dependencies
run: |
sudo apt update
sudo apt -yq install subversion
sudo apt -yq install $(<dependencies)
- name: clone and build XIOS
run: |
svn co http://forge.ipsl.fr/ioserver/svn/${{ matrix.version }} XIOS
cp arch/* XIOS/arch/
cd XIOS
if [ ${{ matrix.version }} == 'XIOS3/trunk' ]; then
patch -p0 < ../patches/xios3/revert_svn2517_transport.patch
sed -i 's/<variable_group id="parameters" >/<variable_group id="parameters" > <variable id="transport_protocol" type="string" >p2p<\/variable>/g' generic_testcase/iodef.xml
cat generic_testcase/iodef.xml
fi
./make_xios --job 2 --arch GCC_LINUX_APT --debug
cd ..
shell: bash
- name: run generic
run: |
cd XIOS/generic_testcase
ln -s ../bin/generic_testcase.exe
ln -s ../bin/xios_server.exe
sed -i 's/nb_proc_atm=4/nb_proc_atm=1/g' param.def
mpiexec -n 1 ./generic_testcase.exe : -n 1 ./xios_server.exe
cd ../..
- name: run resample example
run: |
. arch/arch-GCC_LINUX_APT.env
. arch/arch-GCC_LINUX_APT.path
export XIOS_BINDIR=$PWD/XIOS/bin
export XIOS_INCDIR=$PWD/XIOS/inc
export XIOS_LIBDIR=$PWD/XIOS/lib
export MVER=${{ matrix.version }}
export MPI_FLAVOUR='openmpi'
python3 -m unittest discover -v -s xios_examples