DESCRIPTION

Package: TranscriptomeReconstructoR
Title: Data-driven Annotation of the Transcriptome
Version: 1.0.0
Authors@R: 
    person(given = "Maxim",
           family = "Ivanov",
           role = c("aut", "cre"),
           email = "aranarh@gmail.com",
           comment = c(ORCID = "0000-0001-7548-3316"))
Description: This package reconstructs the most probable gene/transcript model for a species 
    by combining a few orthogonal high throughput sequencing datasets. The three 
    essential datasets are as follows: i) 5' tag RNA sequencing dataset which shows 
    TSS (transcription start sites), e.g. CAGE; ii) 3' tag RNA sequencing dataset 
    which shows PAS (polyadenylation sites); iii) Full-length RNA sequencing dataset 
    which shows splicing patterns (e.g. Direct RNA-seq on Oxford Nanopore). 
    Optionally, a nascent RNA-seq dataset (e.g. NET-seq or GRO-seq) can be added to 
    resolve the transient non-coding transcripts.
License: `use_gpl3_license()`
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports:
    GenomicRanges,
    GenomicAlignments,
    rtracklayer,
    tidyverse,
    collections,
    methods
Suggests:
    knitr,
    rmarkdown
VignetteBuilder: knitr
BiocViews: Software, Transcription, Transcriptomics, Sequencing, Annotation, GenomeBrowsers