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update sample projects to 1.14.0 #333

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@drbergman drbergman commented Nov 18, 2024

FOR EACH project IN sample_projects:

  • make project
  • python path/to/studio.py -c ./config/PhysiCell_settings.xml # studio v2.40.0 used
    • IF ERROR; CONTINUE # errors came from hierarchical configs
  • DELETE random_seed FROM user_parameters
  • IF COMPARING project SVGS
    • DESYNC SAVE INTERVALS
    • RESTORE SVG SAVE INTERVAL TO PREVIOUS VALUE
  • IF project==worm
    • SET signal DCS TO true # this config does not have Dirichlet_options and so studio currently reads that as DCs are disabled
  • SAVE PhysiCell_settings.xml TO project/config/

FOR EACH `project` IN `sample_projects`:
- `make project`
- `python path/to/studio.py -c ./config/PhysiCell_settings.xml` # studio v2.40.0 used
    - IF ERROR; CONTINUE # errors came from hierarchical configs
- DELETE `random_seed` FROM `user_parameters`
- SAVE `PhysiCell_settings.xml` TO `project/config/`
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