DESCRIPTION

Package: OralMicrobiomeSubstanceUse
Type: Package
Title: Analyze and map oral microbial species in substance users
Version: 4.4.1
Authors@R: 
    person(
        given = "Maryam",
        family = "Hasanzadehkiabi",
        email = "maryam.hasanzadehkiabi@mail.utoronto.ca",
        role = c("aut", "cre")
    )
Maintainer: The package maintainer <maryam.hasanzadehkiabi@mail.utoronto.ca>
Description: This R package designed for the analysis and mapping of microbial species in the oral microbiome, particularly in individuals who use substances.The OralMicrobiomeSubstanceUse package provides tools for analyzing different microbial species in the oral microbiome of substance users, enabling researchers to compare species presence across different substance use types and visualize these differences. The goal of OralMicrobiomeSubstanceUse is to map different microbial species found in the oral microbiome of different types substance users. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Imports: 
    ggplot2,
    shiny,
    shinyalert, 
    readr,
    rjson,
    dplyr,
    httr,
    jsonlite, 
    xml2, 
    magrittr, 
    readxl, 
    rBLAST,
    phyloseq,
    rentrez,
    HMP16SData,
    plotly,
    vegan, 
    stats,
    Biostrings,
    ExperimentHub,
    SummarizedExperiment,
    reshape2,
    tidyr
Roxygen: list(markdown = TRUE)
Depends: R (>= 3.1.0)
Suggests: 
    knitr,
    rmarkdown,
    RTCGA.rnaseq,
    testthat
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/Maryam-hkiabi/OralMicrobiomeSubstanceUse