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Make species lists using GBIF #3

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ajrominger opened this issue Nov 22, 2021 · 1 comment
Open

Make species lists using GBIF #3

ajrominger opened this issue Nov 22, 2021 · 1 comment
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@TestingIC
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enhancement New feature or request

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@ajrominger
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use rgbif
@ajrominger
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ajrominger commented Dec 3, 2021 •
edited by TestingIC
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using the gbif API (through rgbif functions) we want to:

  • allow users to enter geographic information about where they want to get a species list from
    • Start with state
    • Then by county
  • allow users to enter taxonomic information about what kinds of species they want (e.g. all insects or all plants)
  • we want gbif to give us:
    • Scientific name
    • Country or area
    • Coordinates
    • Month & year
    • Basis of record
    • Dataset
    • Kingdom
    • Phylum
    • Class
    • Order
    • Family
    • Genus
    • Species
  • finally, we want to take that list of species and use the existing abbagadabba functions to find all sequence data for those species

@TestingIC TestingIC self-assigned this Dec 4, 2021
@TestingIC TestingIC added the enhancement New feature or request label Dec 4, 2021
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@ajrominger @TestingIC