From f2013ca80127844558fff75385654602b69fbe87 Mon Sep 17 00:00:00 2001
From: d3v-null <dev.null@curtin.edu.au>
Date: Thu, 4 Jul 2024 02:30:40 +0000
Subject: [PATCH] fix run-tests, coverage and mdbook flows cargo update and
 tweak lockfile fix default-features

---
 .github/workflows/coverage.yml      |   1 +
 .github/workflows/deploy-mdbook.yml |   1 +
 .github/workflows/run-tests.yml     |   2 +-
 Cargo.lock                          | 136 ++++++++++++++--------------
 Cargo.toml                          |   8 +-
 5 files changed, 75 insertions(+), 73 deletions(-)

diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
index eace771c..9dfa916c 100644
--- a/.github/workflows/coverage.yml
+++ b/.github/workflows/coverage.yml
@@ -66,3 +66,4 @@ jobs:
         with:
           files: lcov.info
           fail_ci_if_error: true
+          token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/deploy-mdbook.yml b/.github/workflows/deploy-mdbook.yml
index db027e16..e4ef8e31 100644
--- a/.github/workflows/deploy-mdbook.yml
+++ b/.github/workflows/deploy-mdbook.yml
@@ -21,6 +21,7 @@ jobs:
       - name: Build and Test
         run: |
           cd mdbook
+          mdbook-admonish install
           mdbook build
           mdbook test
       - uses: JamesIves/github-pages-deploy-action@4.1.7
diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml
index 19a10b7a..ccc424c5 100644
--- a/.github/workflows/run-tests.yml
+++ b/.github/workflows/run-tests.yml
@@ -82,7 +82,7 @@ jobs:
 
       - name: Minimum-specified Rust version works
         run: |
-          MIN_RUST=$(grep -m1 "rust-version" Cargo.toml | sed 's|.*\"\(.*\)\"|\1|')
+          MIN_RUST=$(grep -m1 "rust-version" Cargo.toml | sed 's|.*\"\(.*\)\".*|\1|')
           ~/.cargo/bin/rustup install $MIN_RUST --profile minimal
           cargo clean
           cargo +${MIN_RUST} test --locked --release
diff --git a/Cargo.lock b/Cargo.lock
index 236e00e3..8b17e877 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -62,9 +62,9 @@ checksum = "d92bec98840b8f03a5ff5413de5293bfcd8bf96467cf5452609f939ec6f5de16"
 
 [[package]]
 name = "assert_cmd"
-version = "2.0.13"
+version = "2.0.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "00ad3f3a942eee60335ab4342358c161ee296829e0d16ff42fc1d6cb07815467"
+checksum = "88903cb14723e4d4003335bb7f8a14f27691649105346a0f0957466c096adfe6"
 dependencies = [
  "anstyle",
  "bstr",
@@ -119,9 +119,9 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bitflags"
-version = "2.5.0"
+version = "2.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf4b9d6a944f767f8e5e0db018570623c85f3d925ac718db4e06d0187adb21c1"
+checksum = "b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de"
 
 [[package]]
 name = "bstr"
@@ -207,9 +207,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.0.99"
+version = "1.0.104"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "96c51067fd44124faa7f870b4b1c969379ad32b2ba805aa959430ceaa384f695"
+checksum = "74b6a57f98764a267ff415d50a25e6e166f3831a5071af4995296ea97d210490"
 dependencies = [
  "jobserver",
  "libc",
@@ -233,7 +233,7 @@ dependencies = [
  "js-sys",
  "num-traits",
  "wasm-bindgen",
- "windows-targets 0.52.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -606,7 +606,7 @@ version = "0.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "330c60081dcc4c72131f8eb70510f1ac07223e5d4163db481a04a0befcffa412"
 dependencies = [
- "libloading 0.8.3",
+ "libloading 0.8.4",
 ]
 
 [[package]]
@@ -629,9 +629,9 @@ dependencies = [
 
 [[package]]
 name = "either"
-version = "1.12.0"
+version = "1.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3dca9240753cf90908d7e4aac30f630662b02aebaa1b58a3cadabdb23385b58b"
+checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0"
 
 [[package]]
 name = "encode_unicode"
@@ -752,7 +752,7 @@ version = "0.13.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2845a73bbd781e691ab7c2a028c579727cd254942e8ced57ff73e0eafd60de87"
 dependencies = [
- "bitflags 2.5.0",
+ "bitflags 2.6.0",
  "byteorder",
  "core-foundation",
  "core-graphics",
@@ -789,7 +789,7 @@ checksum = "1a5c6c585bc94aaf2c7b51dd4c2ba22680844aba4c687be581871a6f518c5742"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -912,7 +912,7 @@ version = "0.18.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "232e6a7bfe35766bf715e55a88b39a700596c0ccfd88cd3680b4cdb40d66ef70"
 dependencies = [
- "bitflags 2.5.0",
+ "bitflags 2.6.0",
  "libc",
  "libgit2-sys",
  "log",
@@ -927,11 +927,10 @@ checksum = "d2fabcfbdc87f4758337ca535fb41a6d701b65693ce38287d856d1674551ec9b"
 
 [[package]]
 name = "half"
-version = "2.4.1"
+version = "2.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6dd08c532ae367adf81c312a4580bc67f1d0fe8bc9c460520283f4c0ff277888"
+checksum = "02b4af3693f1b705df946e9fe5631932443781d0aabb423b62fcd4d73f6d2fd0"
 dependencies = [
- "cfg-if",
  "crunchy",
 ]
 
@@ -1315,12 +1314,12 @@ dependencies = [
 
 [[package]]
 name = "libloading"
-version = "0.8.3"
+version = "0.8.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0c2a198fb6b0eada2a8df47933734e6d35d350665a33a3593d7164fa52c75c19"
+checksum = "e310b3a6b5907f99202fcdb4960ff45b93735d7c7d96b760fcff8db2dc0e103d"
 dependencies = [
  "cfg-if",
- "windows-targets 0.52.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -1335,7 +1334,7 @@ version = "0.1.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c0ff37bd590ca25063e35af745c343cb7a0271906fb7b37e4813e8f79f00268d"
 dependencies = [
- "bitflags 2.5.0",
+ "bitflags 2.6.0",
  "libc",
 ]
 
@@ -1375,9 +1374,9 @@ dependencies = [
 
 [[package]]
 name = "log"
-version = "0.4.21"
+version = "0.4.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "90ed8c1e510134f979dbc4f070f87d4313098b704861a105fe34231c70a3901c"
+checksum = "a7a70ba024b9dc04c27ea2f0c0548feb474ec5c54bba33a7f72f873a39d07b24"
 
 [[package]]
 name = "marlu"
@@ -1565,7 +1564,7 @@ checksum = "ed3955f1a9c7c0c15e092f9c887db08b1fc683305fdf6eb6684f22555355e202"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -1662,7 +1661,7 @@ dependencies = [
  "libc",
  "redox_syscall 0.5.2",
  "smallvec",
- "windows-targets 0.52.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -1768,12 +1767,13 @@ checksum = "7170ef9988bc169ba16dd36a7fa041e5c4cbeb6a35b76d4c03daded371eae7c0"
 
 [[package]]
 name = "predicates"
-version = "3.1.0"
+version = "3.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "68b87bfd4605926cdfefc1c3b5f8fe560e3feca9d5552cf68c466d3d8236c7e8"
+checksum = "09963355b9f467184c04017ced4a2ba2d75cbcb4e7462690d388233253d4b1a9"
 dependencies = [
  "anstyle",
  "difflib",
+ "itertools",
  "predicates-core",
 ]
 
@@ -1819,9 +1819,9 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.85"
+version = "1.0.86"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "22244ce15aa966053a896d1accb3a6e68469b97c7f33f284b99f0d576879fc23"
+checksum = "5e719e8df665df0d1c8fbfd238015744736151d4445ec0836b8e628aae103b77"
 dependencies = [
  "unicode-ident",
 ]
@@ -1885,7 +1885,7 @@ version = "0.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c82cf8cff14456045f55ec4241383baeff27af886adb72ffb2162f99911de0fd"
 dependencies = [
- "bitflags 2.5.0",
+ "bitflags 2.6.0",
 ]
 
 [[package]]
@@ -1997,7 +1997,7 @@ version = "0.38.34"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "70dc5ec042f7a43c4a73241207cecc9873a06d45debb38b329f8541d85c2730f"
 dependencies = [
- "bitflags 2.5.0",
+ "bitflags 2.6.0",
  "errno",
  "libc",
  "linux-raw-sys 0.4.14",
@@ -2054,14 +2054,14 @@ checksum = "500cbc0ebeb6f46627f50f3f5811ccf6bf00643be300b4c3eabc0ef55dc5b5ba"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
 name = "serde_json"
-version = "1.0.117"
+version = "1.0.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "455182ea6142b14f93f4bc5320a2b31c1f266b66a4a5c858b013302a5d8cbfc3"
+checksum = "4e0d21c9a8cae1235ad58a00c11cb40d4b1e5c784f1ef2c537876ed6ffd8b7c5"
 dependencies = [
  "itoa",
  "ryu",
@@ -2112,7 +2112,7 @@ checksum = "91d129178576168c589c9ec973feedf7d3126c01ac2bf08795109aa35b69fb8f"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -2180,9 +2180,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.66"
+version = "2.0.68"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c42f3f41a2de00b01c0aaad383c5a45241efc8b2d1eda5661812fda5f3cdcff5"
+checksum = "901fa70d88b9d6c98022e23b4136f9f3e54e4662c3bc1bd1d84a42a9a0f0c1e9"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2263,7 +2263,7 @@ checksum = "46c3384250002a6d5af4d114f2845d37b57521033f30d5c3f46c4d70e1197533"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -2278,9 +2278,9 @@ dependencies = [
 
 [[package]]
 name = "tinyvec"
-version = "1.6.0"
+version = "1.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "87cc5ceb3875bb20c2890005a4e226a4651264a5c75edb2421b52861a0a0cb50"
+checksum = "c55115c6fbe2d2bef26eb09ad74bde02d8255476fc0c7b515ef09fbb35742d82"
 dependencies = [
  "tinyvec_macros",
 ]
@@ -2451,7 +2451,7 @@ dependencies = [
  "once_cell",
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
  "wasm-bindgen-shared",
 ]
 
@@ -2473,7 +2473,7 @@ checksum = "e94f17b526d0a461a191c78ea52bbce64071ed5c04c9ffe424dcb38f74171bb7"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
  "wasm-bindgen-backend",
  "wasm-bindgen-shared",
 ]
@@ -2531,7 +2531,7 @@ version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "33ab640c8d7e35bf8ba19b884ba838ceb4fba93a4e8c65a9059d08afcfc683d9"
 dependencies = [
- "windows-targets 0.52.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -2549,7 +2549,7 @@ version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
 dependencies = [
- "windows-targets 0.52.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -2569,18 +2569,18 @@ dependencies = [
 
 [[package]]
 name = "windows-targets"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6f0713a46559409d202e70e28227288446bf7841d3211583a4b53e3f6d96e7eb"
+checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
 dependencies = [
- "windows_aarch64_gnullvm 0.52.5",
- "windows_aarch64_msvc 0.52.5",
- "windows_i686_gnu 0.52.5",
+ "windows_aarch64_gnullvm 0.52.6",
+ "windows_aarch64_msvc 0.52.6",
+ "windows_i686_gnu 0.52.6",
  "windows_i686_gnullvm",
- "windows_i686_msvc 0.52.5",
- "windows_x86_64_gnu 0.52.5",
- "windows_x86_64_gnullvm 0.52.5",
- "windows_x86_64_msvc 0.52.5",
+ "windows_i686_msvc 0.52.6",
+ "windows_x86_64_gnu 0.52.6",
+ "windows_x86_64_gnullvm 0.52.6",
+ "windows_x86_64_msvc 0.52.6",
 ]
 
 [[package]]
@@ -2591,9 +2591,9 @@ checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8"
 
 [[package]]
 name = "windows_aarch64_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7088eed71e8b8dda258ecc8bac5fb1153c5cffaf2578fc8ff5d61e23578d3263"
+checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
 [[package]]
 name = "windows_aarch64_msvc"
@@ -2603,9 +2603,9 @@ checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc"
 
 [[package]]
 name = "windows_aarch64_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9985fd1504e250c615ca5f281c3f7a6da76213ebd5ccc9561496568a2752afb6"
+checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
 [[package]]
 name = "windows_i686_gnu"
@@ -2615,15 +2615,15 @@ checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e"
 
 [[package]]
 name = "windows_i686_gnu"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "88ba073cf16d5372720ec942a8ccbf61626074c6d4dd2e745299726ce8b89670"
+checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
 [[package]]
 name = "windows_i686_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "87f4261229030a858f36b459e748ae97545d6f1ec60e5e0d6a3d32e0dc232ee9"
+checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
 [[package]]
 name = "windows_i686_msvc"
@@ -2633,9 +2633,9 @@ checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406"
 
 [[package]]
 name = "windows_i686_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db3c2bf3d13d5b658be73463284eaf12830ac9a26a90c717b7f771dfe97487bf"
+checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
 [[package]]
 name = "windows_x86_64_gnu"
@@ -2645,9 +2645,9 @@ checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e"
 
 [[package]]
 name = "windows_x86_64_gnu"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4e4246f76bdeff09eb48875a0fd3e2af6aada79d409d33011886d3e1581517d9"
+checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
 [[package]]
 name = "windows_x86_64_gnullvm"
@@ -2657,9 +2657,9 @@ checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc"
 
 [[package]]
 name = "windows_x86_64_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "852298e482cd67c356ddd9570386e2862b5673c85bd5f88df9ab6802b334c596"
+checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
 [[package]]
 name = "windows_x86_64_msvc"
@@ -2669,9 +2669,9 @@ checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538"
 
 [[package]]
 name = "windows_x86_64_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0"
+checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
 [[package]]
 name = "winnow"
diff --git a/Cargo.toml b/Cargo.toml
index eb85e924..19c10821 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -6,7 +6,7 @@ authors = [
     "Dev Null <dev.null@curtin.edu.au>",
 ]
 edition = "2021"
-rust-version = "1.68" # `cargo +1.68 build --locked` works, but technically development needs 1.73
+rust-version = "1.68"
 license = "MPL-2.0"
 readme = "README.md"
 description = "Calibration software for the Murchison Widefield Array (MWA) radio telescope"
@@ -58,7 +58,7 @@ cuda-static = ["mwa_hyperbeam/cuda-static"]
 all-static = ["hdf5-static", "cfitsio-static", "cuda-static"]
 
 [dependencies]
-birli = { version = "0.11.0", default_features = false }
+birli = { version = "0.11.0", default-features = false }
 bytemuck = "1.13.1"
 byteorder = "1.4.3"
 cfg-if = "1.0.0"
@@ -115,8 +115,8 @@ plotters = { version = "0.3.5", default-features = false, features = [
 
 [dev-dependencies]
 approx = "0.5.1"
-assert_cmd = "2.0.0"                                        # 2.0.14 requires Rust 1.73.0
-criterion = { version = "0.4.0", default_features = false }
+assert_cmd = "2.0.0"                                        # warning: 2.0.14 requires Rust 1.73.0
+criterion = { version = "0.4.0", default-features = false }
 indoc = "2.0.1"
 marlu = { version = "0.11.0", features = ["approx"] }
 ndarray = { version = "0.15.4", features = ["approx-0_5"] }