From 0ddb1683a7c413d5a6eebba186a36e7afde2faf6 Mon Sep 17 00:00:00 2001
From: d3v-null <dev.null@curtin.edu.au>
Date: Tue, 24 Sep 2024 20:43:30 +0800
Subject: [PATCH] second part dockerfile

---
 Dockerfile | 282 ++++++++++++++++++++++++++---------------------------
 1 file changed, 141 insertions(+), 141 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 69c3fe3..d3bc9bf 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -101,146 +101,146 @@ RUN python -m pip install --no-cache-dir \
     git+https://github.com/tjgalvin/fits_warp.git \
     ;
 
-# ARG MWALIB_BRANCH=v1.5.0
-# RUN git clone --depth 1 --branch=${MWALIB_BRANCH} https://github.com/MWATelescope/mwalib.git /mwalib && \
-#     cd /mwalib && \
-#     maturin build --release --features=python && \
-#     python -m pip install $(ls -1 target/wheels/*.whl | tail -n 1) && \
-#     cd / && \
-#     rm -rf /mwalib ${CARGO_HOME}/registry
-
-# # for example, CMAKE_ARGS="-D CMAKE_CXX_FLAGS='-march=native -mtune=native -O3 -fomit-frame-pointer'"
-# ARG CMAKE_ARGS="-D PORTABLE=ON"
-
-# ARG EVERYBEAM_BRANCH=v0.5.2
-# RUN git clone --depth 1 --branch=${EVERYBEAM_BRANCH} --recurse-submodules https://git.astron.nl/RD/EveryBeam.git /EveryBeam && \
-#     cd /EveryBeam && \
-#     git submodule update --init --recursive && \
-#     mkdir build && \
-#     cd build && \
-#     cmake $CMAKE_ARGS .. && \
-#     make install -j`nproc` && \
-#     cd / && \
-#     rm -rf /EveryBeam
-
-# ARG IDG_BRANCH=1.2.0
-# RUN git clone --depth 1 --branch=${IDG_BRANCH} https://git.astron.nl/RD/idg.git /idg && \
-#     cd /idg && \
-#     git submodule update --init --recursive && \
-#     mkdir build && \
-#     cd build && \
-#     cmake $CMAKE_ARGS .. && \
-#     make install -j`nproc` && \
-#     cd / && \
-#     rm -rf /idg
-
-# ARG WSCLEAN_BRANCH=v3.4
-# RUN git clone --depth 1 --branch=${WSCLEAN_BRANCH} https://gitlab.com/aroffringa/wsclean.git /wsclean && \
-#     cd /wsclean && \
-#     git submodule update --init --recursive && \
-#     mkdir build && \
-#     cd build && \
-#     cmake $CMAKE_ARGS .. && \
-#     make install -j`nproc` && \
-#     cd / && \
-#     rm -rf /wsclean
-
-# ARG GIANTSQUID_BRANCH=v1.0.3
-# RUN git clone --depth 1 --branch=${GIANTSQUID_BRANCH} https://github.com/MWATelescope/giant-squid.git /giant-squid && \
-#     cd /giant-squid && \
+ARG MWALIB_BRANCH=v1.5.0
+RUN git clone --depth 1 --branch=${MWALIB_BRANCH} https://github.com/MWATelescope/mwalib.git /mwalib && \
+    cd /mwalib && \
+    maturin build --release --features=python && \
+    python -m pip install $(ls -1 target/wheels/*.whl | tail -n 1) && \
+    cd / && \
+    rm -rf /mwalib ${CARGO_HOME}/registry
+
+# for example, CMAKE_ARGS="-D CMAKE_CXX_FLAGS='-march=native -mtune=native -O3 -fomit-frame-pointer'"
+ARG CMAKE_ARGS="-D PORTABLE=ON"
+
+ARG EVERYBEAM_BRANCH=v0.5.2
+RUN git clone --depth 1 --branch=${EVERYBEAM_BRANCH} --recurse-submodules https://git.astron.nl/RD/EveryBeam.git /EveryBeam && \
+    cd /EveryBeam && \
+    git submodule update --init --recursive && \
+    mkdir build && \
+    cd build && \
+    cmake $CMAKE_ARGS .. && \
+    make install -j`nproc` && \
+    cd / && \
+    rm -rf /EveryBeam
+
+ARG IDG_BRANCH=1.2.0
+RUN git clone --depth 1 --branch=${IDG_BRANCH} https://git.astron.nl/RD/idg.git /idg && \
+    cd /idg && \
+    git submodule update --init --recursive && \
+    mkdir build && \
+    cd build && \
+    cmake $CMAKE_ARGS .. && \
+    make install -j`nproc` && \
+    cd / && \
+    rm -rf /idg
+
+ARG WSCLEAN_BRANCH=v3.4
+RUN git clone --depth 1 --branch=${WSCLEAN_BRANCH} https://gitlab.com/aroffringa/wsclean.git /wsclean && \
+    cd /wsclean && \
+    git submodule update --init --recursive && \
+    mkdir build && \
+    cd build && \
+    cmake $CMAKE_ARGS .. && \
+    make install -j`nproc` && \
+    cd / && \
+    rm -rf /wsclean
+
+ARG GIANTSQUID_BRANCH=v1.0.3
+RUN git clone --depth 1 --branch=${GIANTSQUID_BRANCH} https://github.com/MWATelescope/giant-squid.git /giant-squid && \
+    cd /giant-squid && \
+    cargo install --path . --locked && \
+    cd / && \
+    rm -rf /giant-squid ${CARGO_HOME}/registry
+
+ARG AOFLAGGER_BRANCH=v3.4.0
+RUN git clone --depth 1 --branch=${AOFLAGGER_BRANCH} --recurse-submodules https://gitlab.com/aroffringa/aoflagger.git /aoflagger && \
+    cd /aoflagger && \
+    mkdir build && \
+    cd build && \
+    cmake $CMAKE_ARGS \
+    -DENABLE_GUI=OFF \
+    .. && \
+    make install -j`nproc` && \
+    ldconfig && \
+    cd / && \
+    rm -rf /aoflagger
+# set up aoflagger python library
+ENV PYTHONPATH="/usr/local/lib/:$PYTHONPATH"
+
+ARG BIRLI_GIT=https://github.com/MWATelescope/Birli.git
+ARG BIRLI_BRANCH=main
+RUN cargo install birli --locked --git=${BIRLI_GIT} --branch=${BIRLI_BRANCH} && \
+    rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
+
+ARG HYPERBEAM_GIT=https://github.com/MWATelescope/mwa_hyperbeam.git
+ARG HYPERBEAM_BRANCH=marlu0.14
+ARG HYPERBEAM_FEATURES=python
+# This won't install the python library:
+# RUN cargo install mwa_hyperbeam --locked --git=${HYPERBEAM_GIT} --branch=${HYPERBEAM_BRANCH} --features=${HYPERBEAM_FEATURES} && \
+#     rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
+RUN git clone --depth 1 --branch=${HYPERBEAM_BRANCH} ${HYPERBEAM_GIT} /hyperbeam && \
+    cd /hyperbeam && \
+    maturin build --locked --release --features=${HYPERBEAM_FEATURES} && \
+    python -m pip install $(ls -1 target/wheels/*.whl | tail -n 1) && \
+    rm -rf /hyperbeam ${CARGO_HOME}/registry
+
+ARG HYPERDRIVE_GIT=https://github.com/MWATelescope/mwa_hyperdrive.git
+# # HACK: birli0.14 needs newer ndarray
+# ARG HYPERDRIVE_BRANCH=main
+ARG HYPERDRIVE_BRANCH=birli0.14
+# TODO: ARG HYPERDRIVE_FEATURES=  ... --features=${HYPERDRIVE_FEATURES}
+RUN cargo install mwa_hyperdrive --locked --git=${HYPERDRIVE_GIT} --branch=${HYPERDRIVE_BRANCH} && \
+    rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
+
+# # HACK: beam_fits deserves its own feature branch
+# ARG HYPERDRIVE_BRANCH=marlu0.13
+# RUN git clone --depth 1 --branch=${HYPERDRIVE_BRANCH} https://github.com/MWATelescope/mwa_hyperdrive.git /hyperdrive && \
+#     cd /hyperdrive && \
+#     # mkdir -p src/hacks && \
+#     # wget -Osrc/hacks/beam_fits.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/hacks/beam_fits.rs && \
+#     # wget -Osrc/hacks/mod.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/hacks/mod.rs && \
+#     # sed -i '/mod cli;/a pub mod hacks;' src/lib.rs && \
+#     # cat src/lib.rs && \
+#     # wget -Osrc/cli/mod.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/cli/mod.rs && \
 #     cargo install --path . --locked && \
 #     cd / && \
-#     rm -rf /giant-squid ${CARGO_HOME}/registry
-
-# ARG AOFLAGGER_BRANCH=v3.4.0
-# RUN git clone --depth 1 --branch=${AOFLAGGER_BRANCH} --recurse-submodules https://gitlab.com/aroffringa/aoflagger.git /aoflagger && \
-#     cd /aoflagger && \
-#     mkdir build && \
-#     cd build && \
-#     cmake $CMAKE_ARGS \
-#     -DENABLE_GUI=OFF \
-#     .. && \
-#     make install -j`nproc` && \
-#     ldconfig && \
-#     cd / && \
-#     rm -rf /aoflagger
-# # set up aoflagger python library
-# ENV PYTHONPATH="/usr/local/lib/:$PYTHONPATH"
-
-# ARG BIRLI_GIT=https://github.com/MWATelescope/Birli.git
-# ARG BIRLI_BRANCH=main
-# RUN cargo install birli --locked --git=${BIRLI_GIT} --branch=${BIRLI_BRANCH} && \
-#     rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
-
-# ARG HYPERBEAM_GIT=https://github.com/MWATelescope/mwa_hyperbeam.git
-# ARG HYPERBEAM_BRANCH=marlu0.14
-# ARG HYPERBEAM_FEATURES=python
-# # This won't install the python library:
-# # RUN cargo install mwa_hyperbeam --locked --git=${HYPERBEAM_GIT} --branch=${HYPERBEAM_BRANCH} --features=${HYPERBEAM_FEATURES} && \
-# #     rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
-# RUN git clone --depth 1 --branch=${HYPERBEAM_BRANCH} ${HYPERBEAM_GIT} /hyperbeam && \
-#     cd /hyperbeam && \
-#     maturin build --locked --release --features=${HYPERBEAM_FEATURES} && \
-#     python -m pip install $(ls -1 target/wheels/*.whl | tail -n 1) && \
-#     rm -rf /hyperbeam ${CARGO_HOME}/registry
-
-# ARG HYPERDRIVE_GIT=https://github.com/MWATelescope/mwa_hyperdrive.git
-# # # HACK: birli0.14 needs newer ndarray
-# # ARG HYPERDRIVE_BRANCH=main
-# ARG HYPERDRIVE_BRANCH=birli0.14
-# # TODO: ARG HYPERDRIVE_FEATURES=  ... --features=${HYPERDRIVE_FEATURES}
-# RUN cargo install mwa_hyperdrive --locked --git=${HYPERDRIVE_GIT} --branch=${HYPERDRIVE_BRANCH} && \
-#     rm -rf ${CARGO_HOME}/registry /opt/cargo/git/checkouts/
-
-# # # HACK: beam_fits deserves its own feature branch
-# # ARG HYPERDRIVE_BRANCH=marlu0.13
-# # RUN git clone --depth 1 --branch=${HYPERDRIVE_BRANCH} https://github.com/MWATelescope/mwa_hyperdrive.git /hyperdrive && \
-# #     cd /hyperdrive && \
-# #     # mkdir -p src/hacks && \
-# #     # wget -Osrc/hacks/beam_fits.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/hacks/beam_fits.rs && \
-# #     # wget -Osrc/hacks/mod.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/hacks/mod.rs && \
-# #     # sed -i '/mod cli;/a pub mod hacks;' src/lib.rs && \
-# #     # cat src/lib.rs && \
-# #     # wget -Osrc/cli/mod.rs https://raw.githubusercontent.com/MWATelescope/mwa_hyperdrive/refs/heads/SDC3/src/cli/mod.rs && \
-# #     cargo install --path . --locked && \
-# #     cd / && \
-# #     rm -rf /hyperdrive ${CARGO_HOME}/registry
-
-# # # download latest Leap_Second.dat, IERS finals2000A.all
-# RUN python -c "from astropy.time import Time; t=Time.now(); from astropy.utils.data import download_file; download_file('http://data.astropy.org/coordinates/sites.json', cache=True); print(t.gps, t.ut1)"
-
-# # # finufft
-# # # RUN git clone https://github.com/flatironinstitute/finufft.git /finufft && \
-# # #     cd /finufft && \
-# # #     mkdir build && \
-# # #     cd build && \
-# # #     cmake $CMAKE_ARGS \
-# # #     -DENABLE_GUI=OFF \
-# # #     .. && \
-# # #     make install -j`nproc`
-
-# # Copy the demo files
-# COPY ./demo /demo
-# ENV PATH="/demo:${PATH}"
-# WORKDIR /demo
-
-# # HACK: the calibration fitting code in mwax_mover deserves its own public repo
-# FROM d3vnull0/mwax_mover:latest as mwax_mover
-# FROM base
-# # Copy files from the previous mwax_mover stage into the final image
-# COPY --from=mwax_mover /app /mwax_mover
-
-# RUN cd /mwax_mover && \
-#     python -m pip install .
-
-# # # python /mwax_mover/scripts/cal_analysis.py \
-# # # --name "${name}" \
-# # # --metafits "${metafits}" --solns ${soln} \
-# # # --phase-diff-path=/app/phase_diff.txt \
-# # # --plot-residual --residual-vmax=0.5
-
-# # # export metafits=${outdir}/${obsid}/raw/${obsid}.metafits
-# # # export raw="$(ls -1 ${outdir}/${obsid}/raw/${obsid}*.fits)"
-# # # export soln=${outdir}/${obsid}/cal/hyp_soln_${obsid}.fits
-# # # docker run --rm -it -v ${PWD}:${PWD} -w ${PWD} --entrypoint python mwatelescope/mwa-demo:latest /mwax_mover/scripts/cal_analysis.py --name foo --metafits ${metafits} --solns ${soln} --phase-diff-path=/mwax_mover/phase_diff.txt --plot-residual --residual-vmax=0.5
-# # # docker run --rm -it -v ${PWD}:${PWD} -w ${PWD} --entrypoint python d3vnull0/mwax_mover:latest /app/scripts/cal_analysis.py --name foo --metafits ${metafits} --solns ${soln} --phase-diff-path=/app/phase_diff.txt --plot-residual --residual-vmax=0.5
\ No newline at end of file
+#     rm -rf /hyperdrive ${CARGO_HOME}/registry
+
+# # download latest Leap_Second.dat, IERS finals2000A.all
+RUN python -c "from astropy.time import Time; t=Time.now(); from astropy.utils.data import download_file; download_file('http://data.astropy.org/coordinates/sites.json', cache=True); print(t.gps, t.ut1)"
+
+# # finufft
+# # RUN git clone https://github.com/flatironinstitute/finufft.git /finufft && \
+# #     cd /finufft && \
+# #     mkdir build && \
+# #     cd build && \
+# #     cmake $CMAKE_ARGS \
+# #     -DENABLE_GUI=OFF \
+# #     .. && \
+# #     make install -j`nproc`
+
+# Copy the demo files
+COPY ./demo /demo
+ENV PATH="/demo:${PATH}"
+WORKDIR /demo
+
+# HACK: the calibration fitting code in mwax_mover deserves its own public repo
+FROM d3vnull0/mwax_mover:latest as mwax_mover
+FROM base
+# Copy files from the previous mwax_mover stage into the final image
+COPY --from=mwax_mover /app /mwax_mover
+
+RUN cd /mwax_mover && \
+    python -m pip install .
+
+# # python /mwax_mover/scripts/cal_analysis.py \
+# # --name "${name}" \
+# # --metafits "${metafits}" --solns ${soln} \
+# # --phase-diff-path=/app/phase_diff.txt \
+# # --plot-residual --residual-vmax=0.5
+
+# # export metafits=${outdir}/${obsid}/raw/${obsid}.metafits
+# # export raw="$(ls -1 ${outdir}/${obsid}/raw/${obsid}*.fits)"
+# # export soln=${outdir}/${obsid}/cal/hyp_soln_${obsid}.fits
+# # docker run --rm -it -v ${PWD}:${PWD} -w ${PWD} --entrypoint python mwatelescope/mwa-demo:latest /mwax_mover/scripts/cal_analysis.py --name foo --metafits ${metafits} --solns ${soln} --phase-diff-path=/mwax_mover/phase_diff.txt --plot-residual --residual-vmax=0.5
+# # docker run --rm -it -v ${PWD}:${PWD} -w ${PWD} --entrypoint python d3vnull0/mwax_mover:latest /app/scripts/cal_analysis.py --name foo --metafits ${metafits} --solns ${soln} --phase-diff-path=/app/phase_diff.txt --plot-residual --residual-vmax=0.5
\ No newline at end of file