This repository contains the teaching materials for the hands-on digital workshop on Environmental Genomics as part of the Qlife Winter Schoole 2024 (Quantitative Seascape Ecology of Marine Plankton). This workshop is taught by Tom Delmont (Genoscope), Lucia Campese (Napoli) and Lucas Paoli (Pasteur).
| Time | Topic | Instructor | Location |
|---|---|---|---|
| 09:00 - 10:00 | Talks | Tom & Lucas | Room Favard |
| 13:30 - 17:00 | Digital Workshop | Tom, Lucia & Lucas | Room 313 |
*Flexible time to continue afterwards or on Friday in the Open Workshop Session
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You can familiarize yourself with unix (here and/or here) and conda
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You must have Anvi'o v8 installed on your laptop, see anvio.org/install/.
Tom & Lucas will (1) introduce environmental genomics, (2) describe automatic binning and genomic resources, (3) use evolutionary environmental genomics to shed new light on the viral world, and (4) use global scale environmental genomics to explore the biosynthetic potential of the ocean microbiome.
The presentations will be uploaded in the corresponding folder.
Please go to the corresponding folder and follow the instructions.
You can further information under the following links: