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Only one line at the output #9

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giovanniquinones opened this issue Oct 8, 2023 · 0 comments
Open

Only one line at the output #9

giovanniquinones opened this issue Oct 8, 2023 · 0 comments

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@giovanniquinones
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After running the process_asts function I noticed I only get one line at the output.
I checked my input file (from calc_asts) and noticed I should have over one hundred testable genes.
After going through the source code I noticed that the script process.py (https://github.com/LappalainenLab/lorals/tree/master/lorals/process.py in the function _process_asts has a wrong indentation. It seems that starting at line 118 it should be indented out one level.
After I fixed this locally, I was able to run the script successfully.

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