diff --git a/_episodes/02-How to compare two germplasm and how to find sequence varients in the interested region.md b/_episodes/02-How to compare two germplasm and how to find sequence varients in the interested region.md index 19e64c9..6294920 100644 --- a/_episodes/02-How to compare two germplasm and how to find sequence varients in the interested region.md +++ b/_episodes/02-How to compare two germplasm and how to find sequence varients in the interested region.md @@ -7,8 +7,8 @@ questions: - "How to search for sequence variants between two selected germplasm?" - "How to view genome within a given region?" objectives: -- "Providing a step by step demonstration on how to" -keypoints: +- "Providing a step by step demonstration on how to compare two germplasm and how to find sequence varients in an interested region." +keypoints:the - Log in KnowPulse with your user account before searching. --- @@ -25,6 +25,3 @@ The second section of the filter criteria available for the genotype matrix allo In our example, the region of interest is `LcChr4:1875000-2075000`. To enter this, we place `LcChr4` for the `Sequence Name`, `1875000` for the start position and 2075000 for the end position. ![Screenshot of main code listing](../fig/gmatrix-poly-region-4.png) -## Step #5: (Optionally): Restrict to specific variants. -Say you are interested in a specific set of variants and would like to see that subset. You can enter the specific variant names by expanding the `Additional Filter criteria` section then clicking Search. -![Screenshot of main code listing](../fig/gmatrix-poly-region-5.png)