diff --git a/vignettes/pictograph.Rmd b/vignettes/pictograph.Rmd index e0c65d9..2afa419 100644 --- a/vignettes/pictograph.Rmd +++ b/vignettes/pictograph.Rmd @@ -35,7 +35,7 @@ The input file can be read using the importCSV function. Alt read count (y), tot ```{r input_data} input_data <- importCSV(system.file('extdata/example_input.csv', package = 'pictograph'), - alt_reads_thresh = 6, vaf_thresh = 0.02) + alt_reads_thresh = 0, vaf_thresh = 0) ``` ## 3. Clustering mutations and estimating CCFs