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While building intogen with make it is not finding HotMAPS mupit_modbase.sql.gz file. This file is not even present in karchinlab website or even in HotMAPS GitHub page. Please let me how to build Intogen in this case. My command is below:
Hi
While building intogen with make it is not finding HotMAPS mupit_modbase.sql.gz file. This file is not even present in karchinlab website or even in HotMAPS GitHub page. Please let me how to build Intogen in this case. My command is below:
(intogenbuild) iit@lab4:~/intogen-plus/build$ make
Downloading bgdata datasets
bgdata get datasets/genomereference/hg19
.
.
.
python datasets/deconstructsigs/cosmic2exome.py datasets/deconstructsigs/signatures.cosmic.genome.tsv ../datasets/signature/cds.counts.gz ../datasets/signature/wg.counts.gz ../datasets/deconstructsigs/signatures.cosmic.exome.tsv
mkdir ../datasets/hotmaps
wget http://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz -O ../datasets/hotmaps/mupit_database.db.mysql.gz
--2024-03-08 10:21:05-- http://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz
Resolving karchinlab.org (karchinlab.org)... 162.129.223.26
Connecting to karchinlab.org (karchinlab.org)|162.129.223.26|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz [following]
--2024-03-08 10:21:06-- https://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz
Connecting to karchinlab.org (karchinlab.org)|162.129.223.26|:443... connected.
HTTP request sent, awaiting response... 404 Not Found
2024-03-08 10:21:08 ERROR 404: Not Found.
make: *** [datasets/hotmaps/hotmaps.mk:15: ../datasets/hotmaps/mupit_database.db] Error 8
(intogenbuild) iit@lab4:~/intogen-plus/build$
Please let me know where to find this file.
Regards,
Tanay
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