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Debugger for snakemake files #142

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iromeo opened this issue Jul 24, 2019 · 2 comments
Open

Debugger for snakemake files #142

iromeo opened this issue Jul 24, 2019 · 2 comments
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@iromeo
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iromeo commented Jul 24, 2019

At the moment PyCharm debugger doesn't allow to place breakpoints into snakefiles and debug it's pure python code at toplevel and in rule sections. Also debugger doesn't stop on breakpoints in python modules imported from snakefile although allows debugging snakemake library itself.

Snakemake provides some debugger support and could be used in cmdline, see "snakemake --debug" option.

Related to: How to debug the code with PyCharm? #137

@Hoeze
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Hoeze commented May 11, 2023

+1 on this. I just installed PyCharm to debug my snakemake pipeline just to find out that it's not supported :(

@fhg-isi
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fhg-isi commented Jun 27, 2024

Related #25

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