Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in summarizeResults for the allele-based approach #46

Open
myrthesmit opened this issue Feb 11, 2021 · 0 comments
Open

Error in summarizeResults for the allele-based approach #46

myrthesmit opened this issue Feb 11, 2021 · 0 comments

Comments

@myrthesmit
Copy link

Dear prof. Fan,

I was trying the 'getting started' tutorial for your HoneyBADGER package, but I am running into an error after retesting the CNVs identified by the allele-based approach. Initially, HoneyBADGER identifies the following CNV boundaries:
image

When I retest these CNVs I get two warnings, which I think might result from the fact that I get different putative CNV regions than the ones listed in the tutorial:
image

If I then run the `summarizeResults command I get the following error:
image

I already tried to fix the error by setting min.num.cells in the hb$summarizeResults function to 0 as you suggested in one of the previous issues, but this doesn't seem to work...

Thanks a lot for your time!!

Here's my session info:
image
image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant