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In trying to run this notebook, I did the following steps:
Cloned the repo
Moved the files init.py, helper.py, and plot.py to the same directory as LearnLimoneneDynamics.ipynb
Renamed init.py to KineticLearning.py
ran read_time_series_data with limonene_data.csv
I ran into some errors and noticed the following:
In read_timeseries_data, in the following steps in lines 61-62, the returned object has the Strain level of the index duplicated, which causes a downstream error in the augment_data functions. The following fixes it:
'''
if impute:
df = df.groupby('Strain').apply(lambda group: group.interpolate())
df.index = df.index.droplevel(0) # drops the extra index
'''
The text was updated successfully, but these errors were encountered:
In trying to run this notebook, I did the following steps:
I ran into some errors and noticed the following:
'''
if impute:
df = df.groupby('Strain').apply(lambda group: group.interpolate())
df.index = df.index.droplevel(0) # drops the extra index
'''
The text was updated successfully, but these errors were encountered: