Publish docs fails in GitHub actions

[dalonsoa]

It seems to complain about no installing tabulate, but there's no clue on why it needs that package, to start with. As far as I can tell, it is not manually installed when running things locally.

Log of the failed run.

2024-01-19T13:55:58.6609689Z Requested labels: ubuntu-latest
2024-01-19T13:55:58.6609971Z Job defined at: ImperialCollegeLondon/wsi/.github/workflows/publish.yml@refs/tags/v0.4.0
2024-01-19T13:55:58.6610060Z Waiting for a runner to pick up this job...
2024-01-19T13:55:58.9576497Z Job is waiting for a hosted runner to come online.
2024-01-19T13:56:01.6786240Z Job is about to start running on the hosted runner: GitHub Actions 2 (hosted)
2024-01-19T13:56:03.6624707Z Current runner version: '2.311.0'
2024-01-19T13:56:03.6649081Z ##[group]Operating System
2024-01-19T13:56:03.6649871Z Ubuntu
2024-01-19T13:56:03.6650230Z 22.04.3
2024-01-19T13:56:03.6650549Z LTS
2024-01-19T13:56:03.6650963Z ##[endgroup]
2024-01-19T13:56:03.6651352Z ##[group]Runner Image
2024-01-19T13:56:03.6651741Z Image: ubuntu-22.04
2024-01-19T13:56:03.6652198Z Version: 20240116.3.0
2024-01-19T13:56:03.6653202Z Included Software: https://github.com/actions/runner-images/blob/ubuntu22/20240116.3/images/ubuntu/Ubuntu2204-Readme.md
2024-01-19T13:56:03.6654643Z Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu22%2F20240116.3
2024-01-19T13:56:03.6655529Z ##[endgroup]
2024-01-19T13:56:03.6655937Z ##[group]Runner Image Provisioner
2024-01-19T13:56:03.6656412Z 2.0.324.1
2024-01-19T13:56:03.6656772Z ##[endgroup]
2024-01-19T13:56:03.6658927Z ##[group]GITHUB_TOKEN Permissions
2024-01-19T13:56:03.6660618Z Actions: write
2024-01-19T13:56:03.6661060Z Checks: write
2024-01-19T13:56:03.6661677Z Contents: write
2024-01-19T13:56:03.6662158Z Deployments: write
2024-01-19T13:56:03.6662516Z Discussions: write
2024-01-19T13:56:03.6662963Z Issues: write
2024-01-19T13:56:03.6663315Z Metadata: read
2024-01-19T13:56:03.6663691Z Packages: write
2024-01-19T13:56:03.6664107Z Pages: write
2024-01-19T13:56:03.6664501Z PullRequests: write
2024-01-19T13:56:03.6664915Z RepositoryProjects: write
2024-01-19T13:56:03.6665471Z SecurityEvents: write
2024-01-19T13:56:03.6665898Z Statuses: write
2024-01-19T13:56:03.6666279Z ##[endgroup]
2024-01-19T13:56:03.6668365Z Secret source: Actions
2024-01-19T13:56:03.6668936Z Prepare workflow directory
2024-01-19T13:56:03.7296792Z Prepare all required actions
2024-01-19T13:56:03.7454859Z Getting action download info
2024-01-19T13:56:03.9624170Z Download action repository 'actions/checkout@v4' (SHA:b4ffde65f46336ab88eb53be808477a3936bae11)
2024-01-19T13:56:04.0708827Z Download action repository 'actions/setup-python@v5' (SHA:0a5c61591373683505ea898e09a3ea4f39ef2b9c)
2024-01-19T13:56:04.2802836Z Complete job name: publish-docs
2024-01-19T13:56:04.3715295Z ##[group]Run actions/checkout@v4
2024-01-19T13:56:04.3715973Z with:
2024-01-19T13:56:04.3716410Z   repository: ImperialCollegeLondon/wsi
2024-01-19T13:56:04.3717110Z   token: ***
2024-01-19T13:56:04.3717594Z   ssh-strict: true
2024-01-19T13:56:04.3718034Z   persist-credentials: true
2024-01-19T13:56:04.3718457Z   clean: true
2024-01-19T13:56:04.3718930Z   sparse-checkout-cone-mode: true
2024-01-19T13:56:04.3719446Z   fetch-depth: 1
2024-01-19T13:56:04.3719795Z   fetch-tags: false
2024-01-19T13:56:04.3720262Z   show-progress: true
2024-01-19T13:56:04.3720689Z   lfs: false
2024-01-19T13:56:04.3721004Z   submodules: false
2024-01-19T13:56:04.3721495Z   set-safe-directory: true
2024-01-19T13:56:04.3721930Z ##[endgroup]
2024-01-19T13:56:04.5300075Z Syncing repository: ImperialCollegeLondon/wsi
2024-01-19T13:56:04.5302268Z ##[group]Getting Git version info
2024-01-19T13:56:04.5303150Z Working directory is '/home/runner/work/wsi/wsi'
2024-01-19T13:56:04.5304413Z [command]/usr/bin/git version
2024-01-19T13:56:04.5304865Z git version 2.43.0
2024-01-19T13:56:04.5318923Z ##[endgroup]
2024-01-19T13:56:04.5336529Z Temporarily overriding HOME='/home/runner/work/_temp/d3e302eb-aae4-45b4-850b-c591e993d6bf' before making global git config changes
2024-01-19T13:56:04.5338095Z Adding repository directory to the temporary git global config as a safe directory
2024-01-19T13:56:04.5342213Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/wsi/wsi
2024-01-19T13:56:04.5378039Z Deleting the contents of '/home/runner/work/wsi/wsi'
2024-01-19T13:56:04.5383931Z ##[group]Initializing the repository
2024-01-19T13:56:04.5387377Z [command]/usr/bin/git init /home/runner/work/wsi/wsi
2024-01-19T13:56:04.5450338Z hint: Using 'master' as the name for the initial branch. This default branch name
2024-01-19T13:56:04.5452110Z hint: is subject to change. To configure the initial branch name to use in all
2024-01-19T13:56:04.5454202Z hint: of your new repositories, which will suppress this warning, call:
2024-01-19T13:56:04.5456197Z hint: 
2024-01-19T13:56:04.5457391Z hint: 	git config --global init.defaultBranch <name>
2024-01-19T13:56:04.5458464Z hint: 
2024-01-19T13:56:04.5459700Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2024-01-19T13:56:04.5461358Z hint: 'development'. The just-created branch can be renamed via this command:
2024-01-19T13:56:04.5462484Z hint: 
2024-01-19T13:56:04.5463017Z hint: 	git branch -m <name>
2024-01-19T13:56:04.5463714Z Initialized empty Git repository in /home/runner/work/wsi/wsi/.git/
2024-01-19T13:56:04.5471745Z [command]/usr/bin/git remote add origin https://github.com/ImperialCollegeLondon/wsi
2024-01-19T13:56:04.5503426Z ##[endgroup]
2024-01-19T13:56:04.5504191Z ##[group]Disabling automatic garbage collection
2024-01-19T13:56:04.5506198Z [command]/usr/bin/git config --local gc.auto 0
2024-01-19T13:56:04.5534763Z ##[endgroup]
2024-01-19T13:56:04.5535591Z ##[group]Setting up auth
2024-01-19T13:56:04.5540218Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2024-01-19T13:56:04.5569412Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2024-01-19T13:56:04.5861434Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2024-01-19T13:56:04.5891288Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2024-01-19T13:56:04.6138445Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2024-01-19T13:56:04.6174111Z ##[endgroup]
2024-01-19T13:56:04.6175949Z ##[group]Fetching the repository
2024-01-19T13:56:04.6185805Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin +3038e6a79ccb6f62f3c5f4c32b2aa7a5b0fa0241:refs/tags/v0.4.0
2024-01-19T13:56:05.4486924Z From https://github.com/ImperialCollegeLondon/wsi
2024-01-19T13:56:05.4488830Z  * [new ref]         3038e6a79ccb6f62f3c5f4c32b2aa7a5b0fa0241 -> v0.4.0
2024-01-19T13:56:05.4513838Z ##[endgroup]
2024-01-19T13:56:05.4514742Z ##[group]Determining the checkout info
2024-01-19T13:56:05.4515984Z ##[endgroup]
2024-01-19T13:56:05.4516968Z ##[group]Checking out the ref
2024-01-19T13:56:05.4520039Z [command]/usr/bin/git checkout --progress --force refs/tags/v0.4.0
2024-01-19T13:56:05.5120561Z Note: switching to 'refs/tags/v0.4.0'.
2024-01-19T13:56:05.5121425Z 
2024-01-19T13:56:05.5122084Z You are in 'detached HEAD' state. You can look around, make experimental
2024-01-19T13:56:05.5123326Z changes and commit them, and you can discard any commits you make in this
2024-01-19T13:56:05.5124545Z state without impacting any branches by switching back to a branch.
2024-01-19T13:56:05.5125095Z 
2024-01-19T13:56:05.5125470Z If you want to create a new branch to retain commits you create, you may
2024-01-19T13:56:05.5126262Z do so (now or later) by using -c with the switch command. Example:
2024-01-19T13:56:05.5126672Z 
2024-01-19T13:56:05.5126899Z   git switch -c <new-branch-name>
2024-01-19T13:56:05.5127235Z 
2024-01-19T13:56:05.5127419Z Or undo this operation with:
2024-01-19T13:56:05.5127652Z 
2024-01-19T13:56:05.5127799Z   git switch -
2024-01-19T13:56:05.5128014Z 
2024-01-19T13:56:05.5128316Z Turn off this advice by setting config variable advice.detachedHead to false
2024-01-19T13:56:05.5129063Z 
2024-01-19T13:56:05.5129285Z HEAD is now at 3038e6a Update version
2024-01-19T13:56:05.5131284Z ##[endgroup]
2024-01-19T13:56:05.5167305Z [command]/usr/bin/git log -1 --format='%H'
2024-01-19T13:56:05.5190435Z '3038e6a79ccb6f62f3c5f4c32b2aa7a5b0fa0241'
2024-01-19T13:56:05.5524943Z ##[group]Run actions/setup-python@v5
2024-01-19T13:56:05.5525549Z with:
2024-01-19T13:56:05.5525915Z   python-version: 3.11
2024-01-19T13:56:05.5526490Z   check-latest: false
2024-01-19T13:56:05.5527091Z   token: ***
2024-01-19T13:56:05.5527465Z   update-environment: true
2024-01-19T13:56:05.5527823Z   allow-prereleases: false
2024-01-19T13:56:05.5528277Z ##[endgroup]
2024-01-19T13:56:05.7110757Z ##[group]Installed versions
2024-01-19T13:56:05.7188594Z Successfully set up CPython (3.11.7)
2024-01-19T13:56:05.7190069Z ##[endgroup]
2024-01-19T13:56:05.7374048Z ##[group]Run pip install -r requirements-doc.txt
2024-01-19T13:56:05.7374677Z �[36;1mpip install -r requirements-doc.txt�[0m
2024-01-19T13:56:05.7442927Z shell: /usr/bin/bash -e {0}
2024-01-19T13:56:05.7443500Z env:
2024-01-19T13:56:05.7443943Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:05.7444566Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.7/x64/lib/pkgconfig
2024-01-19T13:56:05.7445276Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:05.7445855Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:05.7446496Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:05.7447038Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.7/x64/lib
2024-01-19T13:56:05.7447565Z ##[endgroup]
2024-01-19T13:56:06.4308169Z Collecting asttokens==2.4.1 (from -r requirements-doc.txt (line 7))
2024-01-19T13:56:06.4960679Z   Downloading asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
2024-01-19T13:56:06.5252268Z Collecting attrs==23.1.0 (from -r requirements-doc.txt (line 9))
2024-01-19T13:56:06.5325659Z   Downloading attrs-23.1.0-py3-none-any.whl (61 kB)
2024-01-19T13:56:06.5495821Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 4.5 MB/s eta 0:00:00
2024-01-19T13:56:06.5751676Z Collecting babel==2.13.1 (from -r requirements-doc.txt (line 14))
2024-01-19T13:56:06.5822965Z   Downloading Babel-2.13.1-py3-none-any.whl.metadata (1.6 kB)
2024-01-19T13:56:06.6081990Z Collecting beautifulsoup4==4.12.2 (from -r requirements-doc.txt (line 16))
2024-01-19T13:56:06.6215180Z   Downloading beautifulsoup4-4.12.2-py3-none-any.whl (142 kB)
2024-01-19T13:56:06.6354894Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 11.3 MB/s eta 0:00:00
2024-01-19T13:56:06.6652476Z Collecting bleach==6.1.0 (from -r requirements-doc.txt (line 18))
2024-01-19T13:56:06.6725613Z   Downloading bleach-6.1.0-py3-none-any.whl.metadata (30 kB)
2024-01-19T13:56:06.7020806Z Collecting certifi==2023.7.22 (from -r requirements-doc.txt (line 20))
2024-01-19T13:56:06.7093201Z   Downloading certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB)
2024-01-19T13:56:06.7875234Z Collecting charset-normalizer==3.3.2 (from -r requirements-doc.txt (line 25))
2024-01-19T13:56:06.7948458Z   Downloading charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
2024-01-19T13:56:06.8275884Z Collecting click==8.1.7 (from -r requirements-doc.txt (line 27))
2024-01-19T13:56:06.8348926Z   Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
2024-01-19T13:56:06.8619083Z Collecting click-plugins==1.1.1 (from -r requirements-doc.txt (line 33))
2024-01-19T13:56:06.8693780Z   Downloading click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB)
2024-01-19T13:56:06.8897468Z Collecting cligj==0.7.2 (from -r requirements-doc.txt (line 35))
2024-01-19T13:56:06.8970691Z   Downloading cligj-0.7.2-py3-none-any.whl (7.1 kB)
2024-01-19T13:56:06.9247145Z Collecting colorama==0.4.6 (from -r requirements-doc.txt (line 37))
2024-01-19T13:56:06.9323661Z   Downloading colorama-0.4.6-py2.py3-none-any.whl (25 kB)
2024-01-19T13:56:06.9530412Z Collecting comm==0.2.0 (from -r requirements-doc.txt (line 41))
2024-01-19T13:56:06.9607343Z   Downloading comm-0.2.0-py3-none-any.whl.metadata (3.7 kB)
2024-01-19T13:56:07.0225142Z Collecting contourpy==1.2.0 (from -r requirements-doc.txt (line 43))
2024-01-19T13:56:07.0303832Z   Downloading contourpy-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
2024-01-19T13:56:07.0586689Z Collecting cycler==0.12.1 (from -r requirements-doc.txt (line 45))
2024-01-19T13:56:07.0668679Z   Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
2024-01-19T13:56:07.1657458Z Collecting debugpy==1.8.0 (from -r requirements-doc.txt (line 47))
2024-01-19T13:56:07.1730734Z   Downloading debugpy-1.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.0 kB)
2024-01-19T13:56:07.1962820Z Collecting decorator==5.1.1 (from -r requirements-doc.txt (line 49))
2024-01-19T13:56:07.2035273Z   Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB)
2024-01-19T13:56:07.2244674Z Collecting defusedxml==0.7.1 (from -r requirements-doc.txt (line 51))
2024-01-19T13:56:07.2318273Z   Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
2024-01-19T13:56:07.2543952Z Collecting dill==0.3.7 (from -r requirements-doc.txt (line 53))
2024-01-19T13:56:07.2616023Z   Downloading dill-0.3.7-py3-none-any.whl.metadata (9.9 kB)
2024-01-19T13:56:07.2834406Z Collecting executing==2.0.1 (from -r requirements-doc.txt (line 57))
2024-01-19T13:56:07.2906032Z   Downloading executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
2024-01-19T13:56:07.3141547Z Collecting fastjsonschema==2.18.1 (from -r requirements-doc.txt (line 59))
2024-01-19T13:56:07.3213395Z   Downloading fastjsonschema-2.18.1-py3-none-any.whl.metadata (2.0 kB)
2024-01-19T13:56:07.3825305Z Collecting fiona==1.9.5 (from -r requirements-doc.txt (line 61))
2024-01-19T13:56:07.3904634Z   Downloading fiona-1.9.5-cp311-cp311-manylinux2014_x86_64.whl.metadata (49 kB)
2024-01-19T13:56:07.3954690Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.7/49.7 kB 12.9 MB/s eta 0:00:00
2024-01-19T13:56:07.5029936Z Collecting fonttools==4.44.0 (from -r requirements-doc.txt (line 63))
2024-01-19T13:56:07.5118369Z   Downloading fonttools-4.44.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (153 kB)
2024-01-19T13:56:07.5264987Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 153.6/153.6 kB 11.5 MB/s eta 0:00:00
2024-01-19T13:56:07.5575908Z Collecting geopandas==0.14.0 (from -r requirements-doc.txt (line 65))
2024-01-19T13:56:07.5645447Z   Downloading geopandas-0.14.0-py3-none-any.whl.metadata (1.5 kB)
2024-01-19T13:56:07.5843134Z Collecting ghp-import==2.1.0 (from -r requirements-doc.txt (line 67))
2024-01-19T13:56:07.5915113Z   Downloading ghp_import-2.1.0-py3-none-any.whl (11 kB)
2024-01-19T13:56:07.6324058Z Collecting griffe==0.36.9 (from -r requirements-doc.txt (line 69))
2024-01-19T13:56:07.6409773Z   Downloading griffe-0.36.9-py3-none-any.whl.metadata (6.1 kB)
2024-01-19T13:56:07.6649038Z Collecting idna==3.4 (from -r requirements-doc.txt (line 71))
2024-01-19T13:56:07.6721720Z   Downloading idna-3.4-py3-none-any.whl (61 kB)
2024-01-19T13:56:07.6776683Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 14.4 MB/s eta 0:00:00
2024-01-19T13:56:07.7233001Z Collecting ipykernel==6.26.0 (from -r requirements-doc.txt (line 73))
2024-01-19T13:56:07.7338498Z   Downloading ipykernel-6.26.0-py3-none-any.whl.metadata (6.3 kB)
2024-01-19T13:56:07.7911704Z Collecting ipython==8.17.2 (from -r requirements-doc.txt (line 75))
2024-01-19T13:56:07.7984142Z   Downloading ipython-8.17.2-py3-none-any.whl.metadata (6.0 kB)
2024-01-19T13:56:07.8257526Z Collecting jedi==0.19.1 (from -r requirements-doc.txt (line 77))
2024-01-19T13:56:07.8331391Z   Downloading jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
2024-01-19T13:56:07.8610861Z Collecting jinja2==3.1.2 (from -r requirements-doc.txt (line 79))
2024-01-19T13:56:07.8681744Z   Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB)
2024-01-19T13:56:07.8793858Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 13.4 MB/s eta 0:00:00
2024-01-19T13:56:07.9155258Z Collecting jsonschema==4.19.2 (from -r requirements-doc.txt (line 85))
2024-01-19T13:56:07.9239792Z   Downloading jsonschema-4.19.2-py3-none-any.whl.metadata (7.9 kB)
2024-01-19T13:56:07.9473861Z Collecting jsonschema-specifications==2023.7.1 (from -r requirements-doc.txt (line 87))
2024-01-19T13:56:07.9578972Z   Downloading jsonschema_specifications-2023.7.1-py3-none-any.whl.metadata (2.8 kB)
2024-01-19T13:56:07.9985996Z Collecting jupyter-client==8.6.0 (from -r requirements-doc.txt (line 89))
2024-01-19T13:56:08.0059213Z   Downloading jupyter_client-8.6.0-py3-none-any.whl.metadata (8.3 kB)
2024-01-19T13:56:08.0387855Z Collecting jupyter-core==5.5.0 (from -r requirements-doc.txt (line 93))
2024-01-19T13:56:08.0549045Z   Downloading jupyter_core-5.5.0-py3-none-any.whl.metadata (3.4 kB)
2024-01-19T13:56:08.0737773Z Collecting jupyterlab-pygments==0.2.2 (from -r requirements-doc.txt (line 100))
2024-01-19T13:56:08.0906286Z   Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB)
2024-01-19T13:56:08.1257693Z Collecting jupytext==1.15.2 (from -r requirements-doc.txt (line 102))
2024-01-19T13:56:08.1337859Z   Downloading jupytext-1.15.2-py3-none-any.whl.metadata (9.7 kB)
2024-01-19T13:56:08.1790738Z Collecting kiwisolver==1.4.5 (from -r requirements-doc.txt (line 104))
2024-01-19T13:56:08.1862402Z   Downloading kiwisolver-1.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
2024-01-19T13:56:08.2073927Z Collecting latexcodec==2.0.1 (from -r requirements-doc.txt (line 106))
2024-01-19T13:56:08.2153863Z   Downloading latexcodec-2.0.1-py2.py3-none-any.whl (18 kB)
2024-01-19T13:56:08.2434398Z Collecting markdown==3.5.1 (from -r requirements-doc.txt (line 108))
2024-01-19T13:56:08.2519103Z   Downloading Markdown-3.5.1-py3-none-any.whl.metadata (7.1 kB)
2024-01-19T13:56:08.2807880Z Collecting markdown-it-py==3.0.0 (from -r requirements-doc.txt (line 115))
2024-01-19T13:56:08.2879309Z   Downloading markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB)
2024-01-19T13:56:08.3315959Z Collecting markupsafe==2.1.3 (from -r requirements-doc.txt (line 119))
2024-01-19T13:56:08.3388561Z   Downloading MarkupSafe-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
2024-01-19T13:56:08.4507007Z Collecting matplotlib==3.8.1 (from -r requirements-doc.txt (line 125))
2024-01-19T13:56:08.4596292Z   Downloading matplotlib-3.8.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
2024-01-19T13:56:08.4794274Z Collecting matplotlib-inline==0.1.6 (from -r requirements-doc.txt (line 127))
2024-01-19T13:56:08.4865083Z   Downloading matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
2024-01-19T13:56:08.5084173Z Collecting mdit-py-plugins==0.4.0 (from -r requirements-doc.txt (line 131))
2024-01-19T13:56:08.5157628Z   Downloading mdit_py_plugins-0.4.0-py3-none-any.whl.metadata (2.7 kB)
2024-01-19T13:56:08.5349651Z Collecting mdurl==0.1.2 (from -r requirements-doc.txt (line 133))
2024-01-19T13:56:08.5421007Z   Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB)
2024-01-19T13:56:08.5642244Z Collecting mergedeep==1.3.4 (from -r requirements-doc.txt (line 135))
2024-01-19T13:56:08.5713748Z   Downloading mergedeep-1.3.4-py3-none-any.whl (6.4 kB)
2024-01-19T13:56:08.5957731Z Collecting mistune==3.0.2 (from -r requirements-doc.txt (line 137))
2024-01-19T13:56:08.6028792Z   Downloading mistune-3.0.2-py3-none-any.whl.metadata (1.7 kB)
2024-01-19T13:56:08.6323379Z Collecting mkdocs==1.5.3 (from -r requirements-doc.txt (line 139))
2024-01-19T13:56:08.6417190Z   Downloading mkdocs-1.5.3-py3-none-any.whl.metadata (6.2 kB)
2024-01-19T13:56:08.6618949Z Collecting mkdocs-autorefs==0.5.0 (from -r requirements-doc.txt (line 149))
2024-01-19T13:56:08.6691246Z   Downloading mkdocs_autorefs-0.5.0-py3-none-any.whl.metadata (4.0 kB)
2024-01-19T13:56:08.6912754Z Collecting mkdocs-bibtex==2.11.0 (from -r requirements-doc.txt (line 153))
2024-01-19T13:56:08.7004787Z   Downloading mkdocs-bibtex-2.11.0.tar.gz (19 kB)
2024-01-19T13:56:08.7107523Z   Installing build dependencies: started
2024-01-19T13:56:10.2775660Z   Installing build dependencies: finished with status 'done'
2024-01-19T13:56:10.2781797Z   Getting requirements to build wheel: started
2024-01-19T13:56:10.4175393Z   Getting requirements to build wheel: finished with status 'done'
2024-01-19T13:56:10.4212143Z   Installing backend dependencies: started
2024-01-19T13:56:12.0114460Z   Installing backend dependencies: finished with status 'done'
2024-01-19T13:56:12.0120226Z   Preparing metadata (pyproject.toml): started
2024-01-19T13:56:12.6536102Z   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-19T13:56:12.6736883Z Collecting mkdocs-coverage==1.0.0 (from -r requirements-doc.txt (line 155))
2024-01-19T13:56:12.6859574Z   Downloading mkdocs_coverage-1.0.0-py3-none-any.whl.metadata (3.0 kB)
2024-01-19T13:56:12.7074962Z Collecting mkdocs-gen-files==0.5.0 (from -r requirements-doc.txt (line 157))
2024-01-19T13:56:12.7146537Z   Downloading mkdocs_gen_files-0.5.0-py3-none-any.whl (8.4 kB)
2024-01-19T13:56:12.7388447Z Collecting mkdocs-jupyter==0.24.6 (from -r requirements-doc.txt (line 159))
2024-01-19T13:56:12.7471340Z   Downloading mkdocs_jupyter-0.24.6-py3-none-any.whl.metadata (9.4 kB)
2024-01-19T13:56:12.8332915Z Collecting mkdocs-material==9.4.8 (from -r requirements-doc.txt (line 161))
2024-01-19T13:56:12.8420593Z   Downloading mkdocs_material-9.4.8-py3-none-any.whl.metadata (15 kB)
2024-01-19T13:56:12.8634403Z Collecting mkdocs-material-extensions==1.3 (from -r requirements-doc.txt (line 165))
2024-01-19T13:56:12.8711165Z   Downloading mkdocs_material_extensions-1.3-py3-none-any.whl.metadata (6.9 kB)
2024-01-19T13:56:12.9349974Z Collecting mkdocstrings==0.23.0 (from mkdocstrings[python]==0.23.0->-r requirements-doc.txt (line 169))
2024-01-19T13:56:12.9429633Z   Downloading mkdocstrings-0.23.0-py3-none-any.whl.metadata (7.6 kB)
2024-01-19T13:56:12.9734612Z Collecting mkdocstrings-python==1.7.3 (from -r requirements-doc.txt (line 173))
2024-01-19T13:56:12.9868713Z   Downloading mkdocstrings_python-1.7.3-py3-none-any.whl.metadata (5.7 kB)
2024-01-19T13:56:13.0139747Z Collecting nbclient==0.8.0 (from -r requirements-doc.txt (line 175))
2024-01-19T13:56:13.0217862Z   Downloading nbclient-0.8.0-py3-none-any.whl.metadata (7.8 kB)
2024-01-19T13:56:13.0634391Z Collecting nbconvert==7.11.0 (from -r requirements-doc.txt (line 177))
2024-01-19T13:56:13.0745020Z   Downloading nbconvert-7.11.0-py3-none-any.whl.metadata (7.7 kB)
2024-01-19T13:56:13.1001089Z Collecting nbformat==5.9.2 (from -r requirements-doc.txt (line 179))
2024-01-19T13:56:13.1073796Z   Downloading nbformat-5.9.2-py3-none-any.whl.metadata (3.4 kB)
2024-01-19T13:56:13.1332497Z Collecting nest-asyncio==1.5.8 (from -r requirements-doc.txt (line 184))
2024-01-19T13:56:13.1414345Z   Downloading nest_asyncio-1.5.8-py3-none-any.whl.metadata (2.8 kB)
2024-01-19T13:56:13.2906546Z Collecting numpy==1.26.1 (from -r requirements-doc.txt (line 186))
2024-01-19T13:56:13.3011422Z   Downloading numpy-1.26.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
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2024-01-19T13:56:13.3427814Z Collecting packaging==23.2 (from -r requirements-doc.txt (line 192))
2024-01-19T13:56:13.3440858Z   Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB)
2024-01-19T13:56:13.3623320Z Collecting paginate==0.5.6 (from -r requirements-doc.txt (line 199))
2024-01-19T13:56:13.3697171Z   Downloading paginate-0.5.6.tar.gz (12 kB)
2024-01-19T13:56:13.3766340Z   Installing build dependencies: started
2024-01-19T13:56:14.6901065Z   Installing build dependencies: finished with status 'done'
2024-01-19T13:56:14.6906743Z   Getting requirements to build wheel: started
2024-01-19T13:56:14.8266589Z   Getting requirements to build wheel: finished with status 'done'
2024-01-19T13:56:14.8288213Z   Preparing metadata (pyproject.toml): started
2024-01-19T13:56:14.9782456Z   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-19T13:56:15.0880352Z Collecting pandas==2.1.2 (from -r requirements-doc.txt (line 201))
2024-01-19T13:56:15.0965702Z   Downloading pandas-2.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
2024-01-19T13:56:15.1198887Z Collecting pandocfilters==1.5.0 (from -r requirements-doc.txt (line 206))
2024-01-19T13:56:15.1316960Z   Downloading pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB)
2024-01-19T13:56:15.1547799Z Collecting parso==0.8.3 (from -r requirements-doc.txt (line 208))
2024-01-19T13:56:15.1619311Z   Downloading parso-0.8.3-py2.py3-none-any.whl (100 kB)
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2024-01-19T13:56:15.1911288Z Collecting pathspec==0.11.2 (from -r requirements-doc.txt (line 210))
2024-01-19T13:56:15.1981238Z   Downloading pathspec-0.11.2-py3-none-any.whl.metadata (19 kB)
2024-01-19T13:56:15.2186583Z Collecting pexpect==4.9.0 (from -r requirements-doc.txt (line 212))
2024-01-19T13:56:15.2256917Z   Downloading pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
2024-01-19T13:56:15.3860315Z Collecting pillow==10.1.0 (from -r requirements-doc.txt (line 214))
2024-01-19T13:56:15.3934686Z   Downloading Pillow-10.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.5 kB)
2024-01-19T13:56:15.4213168Z Collecting platformdirs==3.11.0 (from -r requirements-doc.txt (line 216))
2024-01-19T13:56:15.4283450Z   Downloading platformdirs-3.11.0-py3-none-any.whl.metadata (11 kB)
2024-01-19T13:56:15.4704811Z Collecting prompt-toolkit==3.0.39 (from -r requirements-doc.txt (line 220))
2024-01-19T13:56:15.4778302Z   Downloading prompt_toolkit-3.0.39-py3-none-any.whl.metadata (6.4 kB)
2024-01-19T13:56:15.6015626Z Collecting psutil==5.9.6 (from -r requirements-doc.txt (line 222))
2024-01-19T13:56:15.6101731Z   Downloading psutil-5.9.6-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB)
2024-01-19T13:56:15.6298130Z Collecting ptyprocess==0.7.0 (from -r requirements-doc.txt (line 224))
2024-01-19T13:56:15.6367913Z   Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
2024-01-19T13:56:15.6544582Z Collecting pure-eval==0.2.2 (from -r requirements-doc.txt (line 226))
2024-01-19T13:56:15.6615578Z   Downloading pure_eval-0.2.2-py3-none-any.whl (11 kB)
2024-01-19T13:56:15.6934588Z Collecting pybtex==0.24.0 (from -r requirements-doc.txt (line 228))
2024-01-19T13:56:15.7037647Z   Downloading pybtex-0.24.0-py2.py3-none-any.whl (561 kB)
2024-01-19T13:56:15.7381823Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 561.4/561.4 kB 17.1 MB/s eta 0:00:00
2024-01-19T13:56:15.7693226Z Collecting pygments==2.16.1 (from -r requirements-doc.txt (line 230))
2024-01-19T13:56:15.7768117Z   Downloading Pygments-2.16.1-py3-none-any.whl.metadata (2.5 kB)
2024-01-19T13:56:15.8145493Z Collecting pymdown-extensions==10.3.1 (from -r requirements-doc.txt (line 236))
2024-01-19T13:56:15.8231516Z   Downloading pymdown_extensions-10.3.1-py3-none-any.whl.metadata (3.2 kB)
2024-01-19T13:56:15.8484999Z Collecting pypandoc==1.12 (from -r requirements-doc.txt (line 240))
2024-01-19T13:56:15.8555582Z   Downloading pypandoc-1.12-py3-none-any.whl.metadata (16 kB)
2024-01-19T13:56:15.8972501Z Collecting pyparsing==3.1.1 (from -r requirements-doc.txt (line 244))
2024-01-19T13:56:15.9061266Z   Downloading pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)
2024-01-19T13:56:15.9729933Z Collecting pyproj==3.6.1 (from -r requirements-doc.txt (line 246))
2024-01-19T13:56:15.9837163Z   Downloading pyproj-3.6.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB)
2024-01-19T13:56:16.0084516Z Collecting python-dateutil==2.8.2 (from -r requirements-doc.txt (line 248))
2024-01-19T13:56:16.0155238Z   Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
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2024-01-19T13:56:16.0824758Z Collecting pytz==2023.3.post1 (from -r requirements-doc.txt (line 254))
2024-01-19T13:56:16.0899638Z   Downloading pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB)
2024-01-19T13:56:16.1369266Z Collecting pyyaml==6.0.1 (from -r requirements-doc.txt (line 256))
2024-01-19T13:56:16.1443788Z   Downloading PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
2024-01-19T13:56:16.1623539Z Collecting pyyaml-env-tag==0.1 (from -r requirements-doc.txt (line 265))
2024-01-19T13:56:16.1748733Z   Downloading pyyaml_env_tag-0.1-py3-none-any.whl (3.9 kB)
2024-01-19T13:56:16.3256890Z Collecting pyzmq==25.1.1 (from -r requirements-doc.txt (line 267))
2024-01-19T13:56:16.3367614Z   Downloading pyzmq-25.1.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (4.9 kB)
2024-01-19T13:56:16.3770019Z Collecting referencing==0.30.2 (from -r requirements-doc.txt (line 271))
2024-01-19T13:56:16.3853171Z   Downloading referencing-0.30.2-py3-none-any.whl.metadata (2.6 kB)
2024-01-19T13:56:16.7289439Z Collecting regex==2023.10.3 (from -r requirements-doc.txt (line 275))
2024-01-19T13:56:16.7391849Z   Downloading regex-2023.10.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB)
2024-01-19T13:56:16.7434600Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.9/40.9 kB 13.0 MB/s eta 0:00:00
2024-01-19T13:56:16.7825812Z Collecting requests==2.31.0 (from -r requirements-doc.txt (line 277))
2024-01-19T13:56:16.7900468Z   Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
2024-01-19T13:56:16.9716783Z Collecting rpds-py==0.12.0 (from -r requirements-doc.txt (line 281))
2024-01-19T13:56:16.9859756Z   Downloading rpds_py-0.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.7 kB)
2024-01-19T13:56:17.0635224Z Collecting shapely==2.0.2 (from -r requirements-doc.txt (line 285))
2024-01-19T13:56:17.0760788Z   Downloading shapely-2.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.0 kB)
2024-01-19T13:56:17.0983090Z Collecting six==1.16.0 (from -r requirements-doc.txt (line 289))
2024-01-19T13:56:17.1055426Z   Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
2024-01-19T13:56:17.1327893Z Collecting soupsieve==2.5 (from -r requirements-doc.txt (line 297))
2024-01-19T13:56:17.1400069Z   Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
2024-01-19T13:56:17.1603944Z Collecting stack-data==0.6.3 (from -r requirements-doc.txt (line 299))
2024-01-19T13:56:17.1673038Z   Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
2024-01-19T13:56:17.1881409Z Collecting tinycss2==1.2.1 (from -r requirements-doc.txt (line 301))
2024-01-19T13:56:17.1988361Z   Downloading tinycss2-1.2.1-py3-none-any.whl (21 kB)
2024-01-19T13:56:17.2175665Z Collecting toml==0.10.2 (from -r requirements-doc.txt (line 303))
2024-01-19T13:56:17.2247583Z   Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-01-19T13:56:17.2661427Z Collecting tornado==6.3.3 (from -r requirements-doc.txt (line 305))
2024-01-19T13:56:17.2736437Z   Downloading tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
2024-01-19T13:56:17.3342669Z Collecting tqdm==4.66.1 (from -r requirements-doc.txt (line 309))
2024-01-19T13:56:17.3415538Z   Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)
2024-01-19T13:56:17.3458423Z      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.6/57.6 kB 19.9 MB/s eta 0:00:00
2024-01-19T13:56:17.3753790Z Collecting traitlets==5.13.0 (from -r requirements-doc.txt (line 313))
2024-01-19T13:56:17.3826615Z   Downloading traitlets-5.13.0-py3-none-any.whl.metadata (10 kB)
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2024-01-19T13:56:21.3076203Z Downloading Pygments-2.16.1-py3-none-any.whl (1.2 MB)
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2024-01-19T13:56:21.3512309Z Downloading pyparsing-3.1.1-py3-none-any.whl (103 kB)
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2024-01-19T13:56:21.3672500Z Downloading pyproj-3.6.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.6 MB)
2024-01-19T13:56:21.4417697Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.6/8.6 MB 117.8 MB/s eta 0:00:00
2024-01-19T13:56:21.4489994Z Downloading pytz-2023.3.post1-py2.py3-none-any.whl (502 kB)
2024-01-19T13:56:21.4567221Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.5/502.5 kB 83.9 MB/s eta 0:00:00
2024-01-19T13:56:21.4642834Z Downloading PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (757 kB)
2024-01-19T13:56:21.4737792Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 757.7/757.7 kB 96.2 MB/s eta 0:00:00
2024-01-19T13:56:21.4839035Z Downloading pyzmq-25.1.1-cp311-cp311-manylinux_2_28_x86_64.whl (1.1 MB)
2024-01-19T13:56:21.4983891Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 86.6 MB/s eta 0:00:00
2024-01-19T13:56:21.5055561Z Downloading referencing-0.30.2-py3-none-any.whl (25 kB)
2024-01-19T13:56:21.5178771Z Downloading regex-2023.10.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (785 kB)
2024-01-19T13:56:21.5277293Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 785.1/785.1 kB 95.5 MB/s eta 0:00:00
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2024-01-19T13:56:21.5391634Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 20.2 MB/s eta 0:00:00
2024-01-19T13:56:21.5516511Z Downloading rpds_py-0.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB)
2024-01-19T13:56:21.5650817Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 104.4 MB/s eta 0:00:00
2024-01-19T13:56:21.5722958Z Downloading shapely-2.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.5 MB)
2024-01-19T13:56:21.5960564Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 115.4 MB/s eta 0:00:00
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2024-01-19T13:56:21.6221410Z Downloading tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB)
2024-01-19T13:56:21.6289172Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 427.7/427.7 kB 82.2 MB/s eta 0:00:00
2024-01-19T13:56:21.6360535Z Downloading tqdm-4.66.1-py3-none-any.whl (78 kB)
2024-01-19T13:56:21.6403126Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 27.8 MB/s eta 0:00:00
2024-01-19T13:56:21.6475625Z Downloading traitlets-5.13.0-py3-none-any.whl (84 kB)
2024-01-19T13:56:21.6517384Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.0/85.0 kB 31.5 MB/s eta 0:00:00
2024-01-19T13:56:21.6586433Z Downloading urllib3-2.0.7-py3-none-any.whl (124 kB)
2024-01-19T13:56:21.6673502Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 124.2/124.2 kB 16.3 MB/s eta 0:00:00
2024-01-19T13:56:21.6743206Z Downloading validators-0.22.0-py3-none-any.whl (26 kB)
2024-01-19T13:56:21.6836612Z Downloading wcwidth-0.2.9-py2.py3-none-any.whl (102 kB)
2024-01-19T13:56:21.6881530Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 102.3/102.3 kB 34.5 MB/s eta 0:00:00
2024-01-19T13:56:21.6986536Z Downloading wsimod-0.4.0-py3-none-any.whl (5.8 MB)
2024-01-19T13:56:21.7495841Z    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.8/5.8 MB 117.9 MB/s eta 0:00:00
2024-01-19T13:56:21.9925251Z Building wheels for collected packages: mkdocs-bibtex, paginate
2024-01-19T13:56:21.9934896Z   Building wheel for mkdocs-bibtex (pyproject.toml): started
2024-01-19T13:56:22.2792040Z   Building wheel for mkdocs-bibtex (pyproject.toml): finished with status 'done'
2024-01-19T13:56:22.2799206Z   Created wheel for mkdocs-bibtex: filename=mkdocs_bibtex-2.11.0-py3-none-any.whl size=10252 sha256=6f2184e1e432d8b051781dccdbfe96fd81debc10b15f3e5898d6470aa8a297bf
2024-01-19T13:56:22.2801898Z   Stored in directory: /home/runner/.cache/pip/wheels/20/c0/b5/21f75251cc6fbc514cdd702a2d85bea082488db280e73403d7
2024-01-19T13:56:22.2823886Z   Building wheel for paginate (pyproject.toml): started
2024-01-19T13:56:22.4503387Z   Building wheel for paginate (pyproject.toml): finished with status 'done'
2024-01-19T13:56:22.4509531Z   Created wheel for paginate: filename=paginate-0.5.6-py3-none-any.whl size=12666 sha256=0c68d15e004aa5a175db41901265eb05e64bfc5a90b61d94c99c817d212db80e
2024-01-19T13:56:22.4511892Z   Stored in directory: /home/runner/.cache/pip/wheels/c6/d1/23/f52e2714a0712789b188486c8ada5f593f6f78c8caa9892a8d
2024-01-19T13:56:22.4529735Z Successfully built mkdocs-bibtex paginate
2024-01-19T13:56:23.0784118Z Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, paginate, fastjsonschema, watchdog, validators, urllib3, tzdata, traitlets, tqdm, tornado, toml, tinycss2, soupsieve, six, rpds-py, regex, pyzmq, pyyaml, pyparsing, pypandoc, pygments, psutil, prompt-toolkit, platformdirs, pillow, pexpect, pathspec, parso, pandocfilters, packaging, numpy, nest-asyncio, mkdocs-material-extensions, mistune, mergedeep, mdurl, markupsafe, markdown, kiwisolver, jupyterlab-pygments, idna, fonttools, executing, dill, defusedxml, decorator, debugpy, cycler, colorama, click, charset-normalizer, certifi, babel, attrs, shapely, requests, referencing, pyyaml-env-tag, python-dateutil, pyproj, pymdown-extensions, matplotlib-inline, markdown-it-py, latexcodec, jupyter-core, jinja2, jedi, griffe, contourpy, comm, cligj, click-plugins, bleach, beautifulsoup4, asttokens, stack-data, pybtex, pandas, mdit-py-plugins, matplotlib, jupyter-client, jsonschema-specifications, ghp-import, fiona, wsimod, mkdocs, jsonschema, ipython, geopandas, nbformat, mkdocs-material, mkdocs-gen-files, mkdocs-coverage, mkdocs-bibtex, mkdocs-autorefs, ipykernel, nbclient, mkdocstrings, jupytext, nbconvert, mkdocstrings-python, mkdocs-jupyter
2024-01-19T13:56:43.1344256Z Successfully installed asttokens-2.4.1 attrs-23.1.0 babel-2.13.1 beautifulsoup4-4.12.2 bleach-6.1.0 certifi-2023.7.22 charset-normalizer-3.3.2 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 colorama-0.4.6 comm-0.2.0 contourpy-1.2.0 cycler-0.12.1 debugpy-1.8.0 decorator-5.1.1 defusedxml-0.7.1 dill-0.3.7 executing-2.0.1 fastjsonschema-2.18.1 fiona-1.9.5 fonttools-4.44.0 geopandas-0.14.0 ghp-import-2.1.0 griffe-0.36.9 idna-3.4 ipykernel-6.26.0 ipython-8.17.2 jedi-0.19.1 jinja2-3.1.2 jsonschema-4.19.2 jsonschema-specifications-2023.7.1 jupyter-client-8.6.0 jupyter-core-5.5.0 jupyterlab-pygments-0.2.2 jupytext-1.15.2 kiwisolver-1.4.5 latexcodec-2.0.1 markdown-3.5.1 markdown-it-py-3.0.0 markupsafe-2.1.3 matplotlib-3.8.1 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mergedeep-1.3.4 mistune-3.0.2 mkdocs-1.5.3 mkdocs-autorefs-0.5.0 mkdocs-bibtex-2.11.0 mkdocs-coverage-1.0.0 mkdocs-gen-files-0.5.0 mkdocs-jupyter-0.24.6 mkdocs-material-9.4.8 mkdocs-material-extensions-1.3 mkdocstrings-0.23.0 mkdocstrings-python-1.7.3 nbclient-0.8.0 nbconvert-7.11.0 nbformat-5.9.2 nest-asyncio-1.5.8 numpy-1.26.1 packaging-23.2 paginate-0.5.6 pandas-2.1.2 pandocfilters-1.5.0 parso-0.8.3 pathspec-0.11.2 pexpect-4.9.0 pillow-10.1.0 platformdirs-3.11.0 prompt-toolkit-3.0.39 psutil-5.9.6 ptyprocess-0.7.0 pure-eval-0.2.2 pybtex-0.24.0 pygments-2.16.1 pymdown-extensions-10.3.1 pypandoc-1.12 pyparsing-3.1.1 pyproj-3.6.1 python-dateutil-2.8.2 pytz-2023.3.post1 pyyaml-6.0.1 pyyaml-env-tag-0.1 pyzmq-25.1.1 referencing-0.30.2 regex-2023.10.3 requests-2.31.0 rpds-py-0.12.0 shapely-2.0.2 six-1.16.0 soupsieve-2.5 stack-data-0.6.3 tinycss2-1.2.1 toml-0.10.2 tornado-6.3.3 tqdm-4.66.1 traitlets-5.13.0 tzdata-2023.3 urllib3-2.0.7 validators-0.22.0 watchdog-3.0.0 wcwidth-0.2.9 webencodings-0.5.1 wsimod-0.4.0
2024-01-19T13:56:43.7627404Z ##[group]Run mkdocs gh-deploy --force
2024-01-19T13:56:43.7627940Z �[36;1mmkdocs gh-deploy --force�[0m
2024-01-19T13:56:43.7679504Z shell: /usr/bin/bash -e {0}
2024-01-19T13:56:43.7679914Z env:
2024-01-19T13:56:43.7680443Z   pythonLocation: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:43.7681076Z   PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.11.7/x64/lib/pkgconfig
2024-01-19T13:56:43.7681728Z   Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:43.7682404Z   Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:43.7683015Z   Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.11.7/x64
2024-01-19T13:56:43.7683570Z   LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.11.7/x64/lib
2024-01-19T13:56:43.7684173Z ##[endgroup]
2024-01-19T13:56:44.3790700Z INFO    -  DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
2024-01-19T13:56:44.3791913Z given by the platformdirs library.  To remove this warning and
2024-01-19T13:56:44.3793204Z see the appropriate new directories, set the environment variable
2024-01-19T13:56:44.3794232Z `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
2024-01-19T13:56:44.3795191Z The use of platformdirs will be the default in `jupyter_core` v6
2024-01-19T13:56:44.3803081Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/jupyter_core/utils/__init__.py", line 90, in deprecation
2024-01-19T13:56:44.3804490Z     warnings.warn(message, DeprecationWarning, stacklevel=stacklevel + 1)
2024-01-19T13:56:44.3805747Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/jupyter_client/connect.py", line 22, in 
2024-01-19T13:56:44.3806818Z     from jupyter_core.paths import jupyter_data_dir, jupyter_runtime_dir, secure_write
2024-01-19T13:56:44.3807307Z 
2024-01-19T13:56:45.2786555Z INFO    -  Cleaning site directory
2024-01-19T13:56:45.2787850Z INFO    -  Building documentation to directory: /home/runner/work/wsi/wsi/site
2024-01-19T13:56:47.3108014Z Traceback (most recent call last):
2024-01-19T13:56:47.3111496Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/pandas/compat/_optional.py", line 132, in import_optional_dependency
2024-01-19T13:56:47.3113535Z     module = importlib.import_module(name)
2024-01-19T13:56:47.3114392Z              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3116114Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/importlib/__init__.py", line 126, in import_module
2024-01-19T13:56:47.3117900Z     return _bootstrap._gcd_import(name[level:], package, level)
2024-01-19T13:56:47.3118765Z            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3119983Z   File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
2024-01-19T13:56:47.3121167Z   File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
2024-01-19T13:56:47.3122570Z   File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked
2024-01-19T13:56:47.3123777Z ModuleNotFoundError: No module named 'tabulate'
2024-01-19T13:56:47.3124342Z 
2024-01-19T13:56:47.3124795Z During handling of the above exception, another exception occurred:
2024-01-19T13:56:47.3125534Z 
2024-01-19T13:56:47.3125853Z Traceback (most recent call last):
2024-01-19T13:56:47.3126889Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/bin/mkdocs", line 8, in <module>
2024-01-19T13:56:47.3127896Z     sys.exit(cli())
2024-01-19T13:56:47.3128508Z              ^^^^^
2024-01-19T13:56:47.3130439Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
2024-01-19T13:56:47.3131748Z     return self.main(*args, **kwargs)
2024-01-19T13:56:47.3132464Z            ^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3133858Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/click/core.py", line 1078, in main
2024-01-19T13:56:47.3198206Z     rv = self.invoke(ctx)
2024-01-19T13:56:47.3198779Z          ^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3200818Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
2024-01-19T13:56:47.3202246Z     return _process_result(sub_ctx.command.invoke(sub_ctx))
2024-01-19T13:56:47.3203008Z                            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3203963Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
2024-01-19T13:56:47.3204741Z     return ctx.invoke(self.callback, **ctx.params)
2024-01-19T13:56:47.3205295Z            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3206169Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/click/core.py", line 783, in invoke
2024-01-19T13:56:47.3206920Z     return __callback(*args, **kwargs)
2024-01-19T13:56:47.3207373Z            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3208509Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/mkdocs/__main__.py", line 313, in gh_deploy_command
2024-01-19T13:56:47.3209589Z     build.build(cfg, dirty=not clean)
2024-01-19T13:56:47.3210641Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/mkdocs/commands/build.py", line 304, in build
2024-01-19T13:56:47.3211472Z     files = config.plugins.on_files(files, config=config)
2024-01-19T13:56:47.3211980Z             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3213247Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/mkdocs/plugins.py", line 533, in on_files
2024-01-19T13:56:47.3214097Z     return self.run_event('files', files, config=config)
2024-01-19T13:56:47.3214754Z            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3215768Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/mkdocs/plugins.py", line 507, in run_event
2024-01-19T13:56:47.3216547Z     result = method(item, **kwargs)
2024-01-19T13:56:47.3216929Z              ^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3217917Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/mkdocs_gen_files/plugin.py", line 39, in on_files
2024-01-19T13:56:47.3218741Z     runpy.run_path(file_name)
2024-01-19T13:56:47.3219282Z   File "<frozen runpy>", line 291, in run_path
2024-01-19T13:56:47.3219776Z   File "<frozen runpy>", line 98, in _run_module_code
2024-01-19T13:56:47.3220289Z   File "<frozen runpy>", line 88, in _run_code
2024-01-19T13:56:47.3221041Z   File "/home/runner/work/wsi/wsi/docs/create_class_page.py", line 129, in <module>
2024-01-19T13:56:47.3221727Z     f.write(mytable.to_markdown(index=False))
2024-01-19T13:56:47.3222155Z             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3223137Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/pandas/core/frame.py", line 2836, in to_markdown
2024-01-19T13:56:47.3223987Z     tabulate = import_optional_dependency("tabulate")
2024-01-19T13:56:47.3224484Z                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-01-19T13:56:47.3225573Z   File "/opt/hostedtoolcache/Python/3.11.7/x64/lib/python3.11/site-packages/pandas/compat/_optional.py", line 135, in import_optional_dependency
2024-01-19T13:56:47.3226473Z     raise ImportError(msg)
2024-01-19T13:56:47.3227146Z ImportError: Missing optional dependency 'tabulate'.  Use pip or conda to install tabulate.
2024-01-19T13:56:47.4550544Z ##[error]Process completed with exit code 1.
2024-01-19T13:56:47.4646328Z Post job cleanup.
2024-01-19T13:56:47.5379092Z [command]/usr/bin/git version
2024-01-19T13:56:47.5419020Z git version 2.43.0
2024-01-19T13:56:47.5462221Z Temporarily overriding HOME='/home/runner/work/_temp/29530296-70ee-4bab-8463-f64db75c14c6' before making global git config changes
2024-01-19T13:56:47.5464104Z Adding repository directory to the temporary git global config as a safe directory
2024-01-19T13:56:47.5467591Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/wsi/wsi
2024-01-19T13:56:47.5502082Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2024-01-19T13:56:47.5534354Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2024-01-19T13:56:47.5781809Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2024-01-19T13:56:47.5802776Z http.https://github.com/.extraheader
2024-01-19T13:56:47.5814248Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2024-01-19T13:56:47.5844823Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2024-01-19T13:56:47.6309928Z Cleaning up orphan processes

[barneydobson]

It builds fine (and even loads the component_library.md) if I comment out:

  - gen-files:
      scripts:
        - docs/create_class_page.py

I think pd.DataFrame().to_markdown is the command that needs tabulate