From ea424ee4d8a8abe345aea3b551a2d964da4a1442 Mon Sep 17 00:00:00 2001
From: Andrey Fedorov <fedorov@bwh.harvard.edu>
Date: Fri, 18 Oct 2024 17:44:27 -0400
Subject: [PATCH] Updated to demonstrate how to select by admitting diagnosis

---
 .../slide_microscopy_metadata_search.ipynb    | 2471 ++++++++++-------
 1 file changed, 1455 insertions(+), 1016 deletions(-)

diff --git a/notebooks/pathomics/slide_microscopy_metadata_search.ipynb b/notebooks/pathomics/slide_microscopy_metadata_search.ipynb
index 5d368ea..a5957f3 100644
--- a/notebooks/pathomics/slide_microscopy_metadata_search.ipynb
+++ b/notebooks/pathomics/slide_microscopy_metadata_search.ipynb
@@ -5,7 +5,6 @@
     "colab": {
       "provenance": [],
       "toc_visible": true,
-      "authorship_tag": "ABX9TyMWcnwGnKZ3t4DGjUpmrVQB",
       "include_colab_link": true
     },
     "kernelspec": {
@@ -40,7 +39,8 @@
         "\n",
         "--\n",
         "\n",
-        "Initial version: Sept 2024"
+        "Initial version: Sept 2024\n",
+        "Updated: Oct 2024"
       ],
       "metadata": {
         "id": "iRHJXEP5ygbz"
@@ -115,7 +115,7 @@
           "height": 444
         },
         "id": "R_d926VyDONK",
-        "outputId": "1dc2e0ec-3696-40d6-d8a5-090ee648a9d1"
+        "outputId": "7b15f3f5-26c0-4f6c-a971-6308ae267a04"
       },
       "execution_count": 3,
       "outputs": [
@@ -124,17 +124,17 @@
           "data": {
             "text/plain": [
               "                                       SeriesInstanceUID  \\\n",
-              "0      1.3.6.1.4.1.5962.99.1.3319141304.1986252809.16...   \n",
-              "1      1.3.6.1.4.1.5962.99.1.3152197829.524344983.163...   \n",
-              "2      1.3.6.1.4.1.5962.99.1.1999062777.1863936885.16...   \n",
-              "3      1.3.6.1.4.1.5962.99.1.1900407564.65707978.1719...   \n",
-              "4      1.3.6.1.4.1.5962.99.1.2901719137.315580539.168...   \n",
+              "0      1.3.6.1.4.1.5962.99.1.1999268320.1342041208.16...   \n",
+              "1      1.3.6.1.4.1.5962.99.1.3131780201.635930551.163...   \n",
+              "2      1.3.6.1.4.1.5962.99.1.3659989787.665993356.164...   \n",
+              "3      1.3.6.1.4.1.5962.99.1.1955591724.1804988297.17...   \n",
+              "4      1.3.6.1.4.1.5962.99.1.1956843406.903021297.171...   \n",
               "...                                                  ...   \n",
-              "65996  1.3.6.1.4.1.5962.99.1.2427784968.111358259.172...   \n",
-              "65997  1.3.6.1.4.1.5962.99.1.2421536925.165092872.172...   \n",
-              "65998  1.3.6.1.4.1.5962.99.1.2424302797.1358492114.17...   \n",
-              "65999  1.3.6.1.4.1.5962.99.1.2425957569.1826649791.17...   \n",
-              "66000  1.3.6.1.4.1.5962.99.1.2419608874.1911229873.17...   \n",
+              "65996  1.3.6.1.4.1.5962.99.1.2420195281.130683138.172...   \n",
+              "65997  1.3.6.1.4.1.5962.99.1.2427576868.335178656.172...   \n",
+              "65998  1.3.6.1.4.1.5962.99.1.2416898309.1706721250.17...   \n",
+              "65999  1.3.6.1.4.1.5962.99.1.2426268918.1085576112.17...   \n",
+              "66000  1.3.6.1.4.1.5962.99.1.2416522735.1131112112.17...   \n",
               "\n",
               "      embeddingMedium_CodeMeaning embeddingMedium_code_designator_value_str  \\\n",
               "0                  [Paraffin wax]                           [SCT:311731000]   \n",
@@ -145,7 +145,7 @@
               "...                           ...                                       ...   \n",
               "65996              [Paraffin wax]                           [SCT:311731000]   \n",
               "65997              [Paraffin wax]                           [SCT:311731000]   \n",
-              "65998                          []                                        []   \n",
+              "65998              [Paraffin wax]                           [SCT:311731000]   \n",
               "65999              [Paraffin wax]                           [SCT:311731000]   \n",
               "66000              [Paraffin wax]                           [SCT:311731000]   \n",
               "\n",
@@ -153,60 +153,60 @@
               "0                     [Formalin]                          [SCT:431510009]   \n",
               "1                             []                                       []   \n",
               "2                     [Formalin]                          [SCT:431510009]   \n",
-              "3                     [Formalin]                          [SCT:431510009]   \n",
-              "4                     [Formalin]                          [SCT:431510009]   \n",
+              "3        [PAXgene Tissue System]                           [NCIt:C185113]   \n",
+              "4        [PAXgene Tissue System]                           [NCIt:C185113]   \n",
               "...                          ...                                      ...   \n",
               "65996    [PAXgene Tissue System]                           [NCIt:C185113]   \n",
               "65997    [PAXgene Tissue System]                           [NCIt:C185113]   \n",
-              "65998   [Tissue freezing medium]                          [SCT:433469005]   \n",
+              "65998    [PAXgene Tissue System]                           [NCIt:C185113]   \n",
               "65999    [PAXgene Tissue System]                           [NCIt:C185113]   \n",
               "66000    [PAXgene Tissue System]                           [NCIt:C185113]   \n",
               "\n",
               "                  staining_usingSubstance_CodeMeaning  \\\n",
-              "0      [water soluble eosin stain, hematoxylin stain]   \n",
+              "0      [hematoxylin stain, water soluble eosin stain]   \n",
               "1      [hematoxylin stain, water soluble eosin stain]   \n",
               "2      [water soluble eosin stain, hematoxylin stain]   \n",
-              "3      [water soluble eosin stain, hematoxylin stain]   \n",
-              "4      [hematoxylin stain, water soluble eosin stain]   \n",
+              "3      [hematoxylin stain, water soluble eosin stain]   \n",
+              "4      [water soluble eosin stain, hematoxylin stain]   \n",
               "...                                               ...   \n",
-              "65996  [hematoxylin stain, water soluble eosin stain]   \n",
+              "65996  [water soluble eosin stain, hematoxylin stain]   \n",
               "65997  [water soluble eosin stain, hematoxylin stain]   \n",
               "65998  [water soluble eosin stain, hematoxylin stain]   \n",
               "65999  [hematoxylin stain, water soluble eosin stain]   \n",
-              "66000  [water soluble eosin stain, hematoxylin stain]   \n",
+              "66000  [hematoxylin stain, water soluble eosin stain]   \n",
               "\n",
               "      staining_usingSubstance_code_designator_value_str  min_PixelSpacing_2sf  \\\n",
-              "0                          [SCT:36879007, SCT:12710003]               0.00025   \n",
+              "0                          [SCT:12710003, SCT:36879007]               0.00051   \n",
               "1                          [SCT:12710003, SCT:36879007]               0.00025   \n",
-              "2                          [SCT:36879007, SCT:12710003]               0.00051   \n",
-              "3                          [SCT:36879007, SCT:12710003]               0.00026   \n",
-              "4                          [SCT:12710003, SCT:36879007]               0.00025   \n",
+              "2                          [SCT:36879007, SCT:12710003]               0.00025   \n",
+              "3                          [SCT:12710003, SCT:36879007]               0.00049   \n",
+              "4                          [SCT:36879007, SCT:12710003]               0.00049   \n",
               "...                                                 ...                   ...   \n",
-              "65996                      [SCT:12710003, SCT:36879007]               0.00049   \n",
+              "65996                      [SCT:36879007, SCT:12710003]               0.00049   \n",
               "65997                      [SCT:36879007, SCT:12710003]               0.00049   \n",
               "65998                      [SCT:36879007, SCT:12710003]               0.00049   \n",
               "65999                      [SCT:12710003, SCT:36879007]               0.00049   \n",
-              "66000                      [SCT:36879007, SCT:12710003]               0.00049   \n",
+              "66000                      [SCT:12710003, SCT:36879007]               0.00049   \n",
               "\n",
               "       max_TotalPixelMatrixColumns  max_TotalPixelMatrixRows  \\\n",
-              "0                           113543                     78359   \n",
-              "1                           101863                     25687   \n",
-              "2                            23904                     20969   \n",
-              "3                            29949                     44899   \n",
-              "4                            49799                     17377   \n",
+              "0                            19920                     29475   \n",
+              "1                           114240                     21855   \n",
+              "2                            71712                     70309   \n",
+              "3                            45815                     37170   \n",
+              "4                            53783                     37464   \n",
               "...                            ...                       ...   \n",
-              "65996                        51791                     38136   \n",
-              "65997                        41831                     29919   \n",
-              "65998                         9959                     16298   \n",
-              "65999                        41831                     30257   \n",
-              "66000                        43823                     31229   \n",
+              "65996                        45815                     37922   \n",
+              "65997                        45815                     34939   \n",
+              "65998                        45815                     34276   \n",
+              "65999                        37847                     38470   \n",
+              "66000                        39839                     31500   \n",
               "\n",
               "       ObjectiveLensPower primaryAnatomicStructure_code_designator_value_str  \\\n",
-              "0                      40                                       SCT:15924003   \n",
+              "0                      20                                       SCT:64163001   \n",
               "1                      40                                       SCT:68594002   \n",
-              "2                      20                                       SCT:64163001   \n",
-              "3                      40                                       SCT:71836000   \n",
-              "4                      40                                      SCT:117590005   \n",
+              "2                      40                                       SCT:74862005   \n",
+              "3                      20                                       SCT:76784001   \n",
+              "4                      20                                       SCT:76784001   \n",
               "...                   ...                                                ...   \n",
               "65996                  20                                       SCT:82082004   \n",
               "65997                  20                                       SCT:82082004   \n",
@@ -215,11 +215,11 @@
               "66000                  20                                       SCT:82082004   \n",
               "\n",
               "      primaryAnatomicStructure_CodeMeaning  \\\n",
-              "0                          Maxillary sinus   \n",
+              "0                         Head of pancreas   \n",
               "1                           Adrenal cortex   \n",
-              "2                         Head of pancreas   \n",
-              "3                              Nasopharynx   \n",
-              "4                                      Ear   \n",
+              "2                                     Uvea   \n",
+              "3                                   Vagina   \n",
+              "4                                   Vagina   \n",
               "...                                    ...   \n",
               "65996           Esophageal mucous membrane   \n",
               "65997           Esophageal mucous membrane   \n",
@@ -230,9 +230,9 @@
               "      primaryAnatomicStructureModifier_code_designator_value_str  \\\n",
               "0                                                   None           \n",
               "1                                           SCT:86049000           \n",
-              "2                                                   None           \n",
-              "3                                          SCT:108369006           \n",
-              "4                                           SCT:24028007           \n",
+              "2                                           SCT:86049000           \n",
+              "3                                                   None           \n",
+              "4                                                   None           \n",
               "...                                                  ...           \n",
               "65996                                               None           \n",
               "65997                                               None           \n",
@@ -243,9 +243,35 @@
               "      primaryAnatomicStructureModifier_CodeMeaning  \\\n",
               "0                                             None   \n",
               "1                                Neoplasm, Primary   \n",
+              "2                                Neoplasm, Primary   \n",
+              "3                                             None   \n",
+              "4                                             None   \n",
+              "...                                            ...   \n",
+              "65996                                         None   \n",
+              "65997                                         None   \n",
+              "65998                                         None   \n",
+              "65999                                         None   \n",
+              "66000                                         None   \n",
+              "\n",
+              "      illuminationType_code_designator_value_str illuminationType_CodeMeaning  \\\n",
+              "0                                     DCM:111744     Brightfield illumination   \n",
+              "1                                     DCM:111744     Brightfield illumination   \n",
+              "2                                     DCM:111744     Brightfield illumination   \n",
+              "3                                     DCM:111744     Brightfield illumination   \n",
+              "4                                     DCM:111744     Brightfield illumination   \n",
+              "...                                          ...                          ...   \n",
+              "65996                                 DCM:111744     Brightfield illumination   \n",
+              "65997                                 DCM:111744     Brightfield illumination   \n",
+              "65998                                 DCM:111744     Brightfield illumination   \n",
+              "65999                                 DCM:111744     Brightfield illumination   \n",
+              "66000                                 DCM:111744     Brightfield illumination   \n",
+              "\n",
+              "      admittingDiagnosis_code_designator_value_str  \\\n",
+              "0                                             None   \n",
+              "1                                             None   \n",
               "2                                             None   \n",
-              "3                                            Tumor   \n",
-              "4                                            Right   \n",
+              "3                                             None   \n",
+              "4                                             None   \n",
               "...                                            ...   \n",
               "65996                                         None   \n",
               "65997                                         None   \n",
@@ -253,24 +279,24 @@
               "65999                                         None   \n",
               "66000                                         None   \n",
               "\n",
-              "      illuminationType_code_designator_value_str illuminationType_CodeMeaning  \n",
-              "0                                     DCM:111744     Brightfield illumination  \n",
-              "1                                     DCM:111744     Brightfield illumination  \n",
-              "2                                     DCM:111744     Brightfield illumination  \n",
-              "3                                     DCM:111744     Brightfield illumination  \n",
-              "4                                     DCM:111744     Brightfield illumination  \n",
-              "...                                          ...                          ...  \n",
-              "65996                                 DCM:111744     Brightfield illumination  \n",
-              "65997                                 DCM:111744     Brightfield illumination  \n",
-              "65998                                 DCM:111744     Brightfield illumination  \n",
-              "65999                                 DCM:111744     Brightfield illumination  \n",
-              "66000                                 DCM:111744     Brightfield illumination  \n",
-              "\n",
-              "[66001 rows x 17 columns]"
+              "      admittingDiagnosis_CodeMeaning  \n",
+              "0                               None  \n",
+              "1                               None  \n",
+              "2                               None  \n",
+              "3                               None  \n",
+              "4                               None  \n",
+              "...                              ...  \n",
+              "65996                           None  \n",
+              "65997                           None  \n",
+              "65998                           None  \n",
+              "65999                           None  \n",
+              "66000                           None  \n",
+              "\n",
+              "[66001 rows x 19 columns]"
             ],
             "text/html": [
               "\n",
-              "  <div id=\"df-23e981d1-5bf0-45ea-9043-6dcc563c1ebc\" class=\"colab-df-container\">\n",
+              "  <div id=\"df-07bca1ee-dd75-4472-ac61-57cdf94886d5\" class=\"colab-df-container\">\n",
               "    <div>\n",
               "<style scoped>\n",
               "    .dataframe tbody tr th:only-of-type {\n",
@@ -306,32 +332,36 @@
               "      <th>primaryAnatomicStructureModifier_CodeMeaning</th>\n",
               "      <th>illuminationType_code_designator_value_str</th>\n",
               "      <th>illuminationType_CodeMeaning</th>\n",
+              "      <th>admittingDiagnosis_code_designator_value_str</th>\n",
+              "      <th>admittingDiagnosis_CodeMeaning</th>\n",
               "    </tr>\n",
               "  </thead>\n",
               "  <tbody>\n",
               "    <tr>\n",
               "      <th>0</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3319141304.1986252809.16...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1999268320.1342041208.16...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[Formalin]</td>\n",
               "      <td>[SCT:431510009]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
-              "      <td>0.00025</td>\n",
-              "      <td>113543</td>\n",
-              "      <td>78359</td>\n",
-              "      <td>40</td>\n",
-              "      <td>SCT:15924003</td>\n",
-              "      <td>Maxillary sinus</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>0.00051</td>\n",
+              "      <td>19920</td>\n",
+              "      <td>29475</td>\n",
+              "      <td>20</td>\n",
+              "      <td>SCT:64163001</td>\n",
+              "      <td>Head of pancreas</td>\n",
               "      <td>None</td>\n",
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>1</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3152197829.524344983.163...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3131780201.635930551.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -339,8 +369,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.00025</td>\n",
-              "      <td>101863</td>\n",
-              "      <td>25687</td>\n",
+              "      <td>114240</td>\n",
+              "      <td>21855</td>\n",
               "      <td>40</td>\n",
               "      <td>SCT:68594002</td>\n",
               "      <td>Adrenal cortex</td>\n",
@@ -348,66 +378,74 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>2</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1999062777.1863936885.16...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3659989787.665993356.164...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[Formalin]</td>\n",
               "      <td>[SCT:431510009]</td>\n",
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
-              "      <td>0.00051</td>\n",
-              "      <td>23904</td>\n",
-              "      <td>20969</td>\n",
-              "      <td>20</td>\n",
-              "      <td>SCT:64163001</td>\n",
-              "      <td>Head of pancreas</td>\n",
-              "      <td>None</td>\n",
-              "      <td>None</td>\n",
+              "      <td>0.00025</td>\n",
+              "      <td>71712</td>\n",
+              "      <td>70309</td>\n",
+              "      <td>40</td>\n",
+              "      <td>SCT:74862005</td>\n",
+              "      <td>Uvea</td>\n",
+              "      <td>SCT:86049000</td>\n",
+              "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>3</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1900407564.65707978.1719...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1955591724.1804988297.17...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
-              "      <td>[Formalin]</td>\n",
-              "      <td>[SCT:431510009]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
-              "      <td>0.00026</td>\n",
-              "      <td>29949</td>\n",
-              "      <td>44899</td>\n",
-              "      <td>40</td>\n",
-              "      <td>SCT:71836000</td>\n",
-              "      <td>Nasopharynx</td>\n",
-              "      <td>SCT:108369006</td>\n",
-              "      <td>Tumor</td>\n",
+              "      <td>[PAXgene Tissue System]</td>\n",
+              "      <td>[NCIt:C185113]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>0.00049</td>\n",
+              "      <td>45815</td>\n",
+              "      <td>37170</td>\n",
+              "      <td>20</td>\n",
+              "      <td>SCT:76784001</td>\n",
+              "      <td>Vagina</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>4</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2901719137.315580539.168...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1956843406.903021297.171...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
-              "      <td>[Formalin]</td>\n",
-              "      <td>[SCT:431510009]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
-              "      <td>0.00025</td>\n",
-              "      <td>49799</td>\n",
-              "      <td>17377</td>\n",
-              "      <td>40</td>\n",
-              "      <td>SCT:117590005</td>\n",
-              "      <td>Ear</td>\n",
-              "      <td>SCT:24028007</td>\n",
-              "      <td>Right</td>\n",
+              "      <td>[PAXgene Tissue System]</td>\n",
+              "      <td>[NCIt:C185113]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>0.00049</td>\n",
+              "      <td>53783</td>\n",
+              "      <td>37464</td>\n",
+              "      <td>20</td>\n",
+              "      <td>SCT:76784001</td>\n",
+              "      <td>Vagina</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>...</th>\n",
@@ -428,19 +466,21 @@
               "      <td>...</td>\n",
               "      <td>...</td>\n",
               "      <td>...</td>\n",
+              "      <td>...</td>\n",
+              "      <td>...</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>65996</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2427784968.111358259.172...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2420195281.130683138.172...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[PAXgene Tissue System]</td>\n",
               "      <td>[NCIt:C185113]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00049</td>\n",
-              "      <td>51791</td>\n",
-              "      <td>38136</td>\n",
+              "      <td>45815</td>\n",
+              "      <td>37922</td>\n",
               "      <td>20</td>\n",
               "      <td>SCT:82082004</td>\n",
               "      <td>Esophageal mucous membrane</td>\n",
@@ -448,10 +488,12 @@
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>65997</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2421536925.165092872.172...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2427576868.335178656.172...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[PAXgene Tissue System]</td>\n",
@@ -459,8 +501,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00049</td>\n",
-              "      <td>41831</td>\n",
-              "      <td>29919</td>\n",
+              "      <td>45815</td>\n",
+              "      <td>34939</td>\n",
               "      <td>20</td>\n",
               "      <td>SCT:82082004</td>\n",
               "      <td>Esophageal mucous membrane</td>\n",
@@ -468,19 +510,21 @@
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>65998</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2424302797.1358492114.17...</td>\n",
-              "      <td>[]</td>\n",
-              "      <td>[]</td>\n",
-              "      <td>[Tissue freezing medium]</td>\n",
-              "      <td>[SCT:433469005]</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2416898309.1706721250.17...</td>\n",
+              "      <td>[Paraffin wax]</td>\n",
+              "      <td>[SCT:311731000]</td>\n",
+              "      <td>[PAXgene Tissue System]</td>\n",
+              "      <td>[NCIt:C185113]</td>\n",
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00049</td>\n",
-              "      <td>9959</td>\n",
-              "      <td>16298</td>\n",
+              "      <td>45815</td>\n",
+              "      <td>34276</td>\n",
               "      <td>20</td>\n",
               "      <td>SCT:82082004</td>\n",
               "      <td>Esophageal mucous membrane</td>\n",
@@ -488,10 +532,12 @@
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>65999</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2425957569.1826649791.17...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2426268918.1085576112.17...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[PAXgene Tissue System]</td>\n",
@@ -499,8 +545,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.00049</td>\n",
-              "      <td>41831</td>\n",
-              "      <td>30257</td>\n",
+              "      <td>37847</td>\n",
+              "      <td>38470</td>\n",
               "      <td>20</td>\n",
               "      <td>SCT:82082004</td>\n",
               "      <td>Esophageal mucous membrane</td>\n",
@@ -508,19 +554,21 @@
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>66000</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2419608874.1911229873.17...</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2416522735.1131112112.17...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[PAXgene Tissue System]</td>\n",
               "      <td>[NCIt:C185113]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.00049</td>\n",
-              "      <td>43823</td>\n",
-              "      <td>31229</td>\n",
+              "      <td>39839</td>\n",
+              "      <td>31500</td>\n",
               "      <td>20</td>\n",
               "      <td>SCT:82082004</td>\n",
               "      <td>Esophageal mucous membrane</td>\n",
@@ -528,15 +576,17 @@
               "      <td>None</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "  </tbody>\n",
               "</table>\n",
-              "<p>66001 rows × 17 columns</p>\n",
+              "<p>66001 rows × 19 columns</p>\n",
               "</div>\n",
               "    <div class=\"colab-df-buttons\">\n",
               "\n",
               "  <div class=\"colab-df-container\">\n",
-              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-23e981d1-5bf0-45ea-9043-6dcc563c1ebc')\"\n",
+              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-07bca1ee-dd75-4472-ac61-57cdf94886d5')\"\n",
               "            title=\"Convert this dataframe to an interactive table.\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -588,12 +638,12 @@
               "\n",
               "    <script>\n",
               "      const buttonEl =\n",
-              "        document.querySelector('#df-23e981d1-5bf0-45ea-9043-6dcc563c1ebc button.colab-df-convert');\n",
+              "        document.querySelector('#df-07bca1ee-dd75-4472-ac61-57cdf94886d5 button.colab-df-convert');\n",
               "      buttonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "\n",
               "      async function convertToInteractive(key) {\n",
-              "        const element = document.querySelector('#df-23e981d1-5bf0-45ea-9043-6dcc563c1ebc');\n",
+              "        const element = document.querySelector('#df-07bca1ee-dd75-4472-ac61-57cdf94886d5');\n",
               "        const dataTable =\n",
               "          await google.colab.kernel.invokeFunction('convertToInteractive',\n",
               "                                                    [key], {});\n",
@@ -613,8 +663,8 @@
               "  </div>\n",
               "\n",
               "\n",
-              "<div id=\"df-b8b63fd2-d5ac-474d-8e46-289b081b382e\">\n",
-              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-b8b63fd2-d5ac-474d-8e46-289b081b382e')\"\n",
+              "<div id=\"df-c4e9b7b1-01bb-4448-bead-e4ba57a495e0\">\n",
+              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-c4e9b7b1-01bb-4448-bead-e4ba57a495e0')\"\n",
               "            title=\"Suggest charts\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -733,7 +783,7 @@
               "    }\n",
               "    (() => {\n",
               "      let quickchartButtonEl =\n",
-              "        document.querySelector('#df-b8b63fd2-d5ac-474d-8e46-289b081b382e button');\n",
+              "        document.querySelector('#df-c4e9b7b1-01bb-4448-bead-e4ba57a495e0 button');\n",
               "      quickchartButtonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "    })();\n",
@@ -745,7 +795,7 @@
             ],
             "application/vnd.google.colaboratory.intrinsic+json": {
               "type": "dataframe",
-              "summary": "{\n  \"name\": \"idc_client\",\n  \"rows\": 66001,\n  \"fields\": [\n    {\n      \"column\": \"SeriesInstanceUID\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 66001,\n        \"samples\": [\n          \"1.3.6.1.4.1.5962.99.1.1736027266.1007109866.1638118599810.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.157694213.344363908.1640835234053.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.2234217459.616538241.1720221168627.4.0\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"min_PixelSpacing_2sf\",\n      \"properties\": {\n        \"dtype\": \"number\",\n        \"std\": 0.02942873712016738,\n        \"min\": 0.00011,\n        \"max\": 1.6,\n        \"num_unique_values\": 57,\n        \"samples\": [\n          0.00025,\n          0.87,\n          0.84\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixColumns\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3276,\n        \"samples\": [\n          46921,\n          47982,\n          88330\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixRows\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 37821,\n        \"samples\": [\n          20057,\n          30238,\n          76484\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"ObjectiveLensPower\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3,\n        \"samples\": [\n          40,\n          20,\n          5\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 172,\n        \"samples\": [\n          \"SCT:9040008\",\n          \"SCT:71854001\",\n          \"SCT:15776009\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 173,\n        \"samples\": [\n          \"Adipose tissue\",\n          \"Calf\",\n          \"Tongue\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"SCT:14799000\",\n          \"SCT:76197007\",\n          \"SCT:86049000\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"Neoplasm, Metastatic\",\n          \"Hyperplasia\",\n          \"Neoplasm, Primary\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"DCM:111743\",\n          \"DCM:111744\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"Epifluorescence illumination\",\n          \"Brightfield illumination\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    }\n  ]\n}"
+              "summary": "{\n  \"name\": \"idc_client\",\n  \"rows\": 66001,\n  \"fields\": [\n    {\n      \"column\": \"SeriesInstanceUID\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 66001,\n        \"samples\": [\n          \"1.3.6.1.4.1.5962.99.1.1764775902.167586087.1638147348446.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1877222871.849258906.1638259795415.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1960338967.556139340.1638342911511.2.0\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"min_PixelSpacing_2sf\",\n      \"properties\": {\n        \"dtype\": \"number\",\n        \"std\": 0.029428737120171314,\n        \"min\": 0.00011,\n        \"max\": 1.6,\n        \"num_unique_values\": 57,\n        \"samples\": [\n          0.00051,\n          0.96,\n          1.2\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixColumns\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3276,\n        \"samples\": [\n          172821,\n          97900,\n          105334\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixRows\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 37821,\n        \"samples\": [\n          21208,\n          33586,\n          56610\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"ObjectiveLensPower\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3,\n        \"samples\": [\n          20,\n          40,\n          5\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 172,\n        \"samples\": [\n          \"SCT:91609006\",\n          \"SCT:71854001\",\n          \"SCT:15776009\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 173,\n        \"samples\": [\n          \"Adipose tissue\",\n          \"Soft tissues of head and neck\",\n          \"Intestine\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"SCT:25173007\",\n          \"SCT:76197007\",\n          \"SCT:86049000\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"Recurrent tumor\",\n          \"Hyperplasia\",\n          \"Neoplasm, Primary\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"DCM:111743\",\n          \"DCM:111744\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"Epifluorescence illumination\",\n          \"Brightfield illumination\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"admittingDiagnosis_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 103,\n        \"samples\": [\n          \"ICDO3:8852/3\",\n          \"ICDO3:9424/3\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"admittingDiagnosis_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 103,\n        \"samples\": [\n          \"Myxoid liposarcoma\",\n          \"Pleomorphic xanthoastrocytoma, NOS\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    }\n  ]\n}"
             }
           },
           "metadata": {},
@@ -763,7 +813,7 @@
           "base_uri": "https://localhost:8080/"
         },
         "id": "y8mxvy9IHGb3",
-        "outputId": "98ddbe3f-b017-4a8a-85b4-343e06bfdee5"
+        "outputId": "4cf5a7c4-4d17-49b2-8e85-94d72a358063"
       },
       "execution_count": 4,
       "outputs": [
@@ -789,6 +839,8 @@
             "primaryAnatomicStructureModifier_CodeMeaning                   object\n",
             "illuminationType_code_designator_value_str                     object\n",
             "illuminationType_CodeMeaning                                   object\n",
+            "admittingDiagnosis_code_designator_value_str                   object\n",
+            "admittingDiagnosis_CodeMeaning                                 object\n",
             "dtype: object\n",
             "\n"
           ]
@@ -798,7 +850,7 @@
     {
       "cell_type": "markdown",
       "source": [
-        "The columns of this index are extracted from the DICOM metadata contained in the images. Here's a quick explanation of what is in those columns (check out [this notebook](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/pathomics/getting_started_with_digital_pathology.ipynb) for an introduction into how DICOM SM images are organized):\n",
+        "The columns of this index are extracted from the DICOM metadata contained in the images. Here's a quick explanation of some of those columns, which are documented in https://idc-index.readthedocs.io/en/latest/column_descriptions.html#sm-index (you can check out [this notebook](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/pathomics/getting_started_with_digital_pathology.ipynb) for an introduction into how DICOM SM images are organized):\n",
         "* `SeriesInstanceUID`: this is a unique identifier of the DICOM series containing the image: one DICOM series = one slide\n",
         "* `embeddingMedium`, `tissueFixative` and `staining_usingSubstance` describe processing the specimen underwent before the image was obtained\n",
         "* `max_TotalPixelMatrixColumns` and `max_TotalMatrixRows` are the dimensions of the image at the maximum resolution\n",
@@ -806,8 +858,11 @@
         "* `ObjectiveLensPower`: power of the objective lens of the equipment used to digitize the slide\n",
         "* `primaryAnatomicStructure`: anatomic location from where the imaged specimen was collected\n",
         "* `primaryAnatomicStructureModifier`: this column may contain additional characteristics of the specimen, such as whether it is a tumor or normal tissue\n",
+        "* `admittingDiagnosis`: diagnosis of the patient, if available\n",
+        "\n",
+        "`sm_index` is just a pandas dataframe. In the following we make a plot that - effectively - counts the number of slides digitized using different objective lens power.\n",
         "\n",
-        "`sm_index` is just a pandas dataframe. In the following we make a plot that - effectively - counts the number of slides digitized using different objective lens power."
+        "In DICOM data model, `SeriesInstanceUID` is a unique identifier that corresponds to a single slide."
       ],
       "metadata": {
         "id": "JvmnHSl99PgV"
@@ -861,9 +916,9 @@
           "height": 507
         },
         "id": "9v1Jyg9Uu_Da",
-        "outputId": "7ceb6cce-a987-4672-9033-72b0475da304"
+        "outputId": "5c3eec66-9aed-4a56-d44a-2ae98eb4ecc9"
       },
-      "execution_count": 7,
+      "execution_count": 5,
       "outputs": [
         {
           "output_type": "display_data",
@@ -898,567 +953,667 @@
           "height": 1000
         },
         "id": "2gMXAoeLF_A_",
-        "outputId": "91b1a8cc-babe-480d-e52d-dcdb6fe591d4"
+        "outputId": "f98b2fa5-fa06-4d5a-a16c-b28537e2f21c"
       },
-      "execution_count": 8,
+      "execution_count": 6,
       "outputs": [
         {
           "output_type": "execute_result",
           "data": {
             "text/plain": [
               "                                       SeriesInstanceUID  \\\n",
-              "14642  1.3.6.1.4.1.5962.99.1.1158178852.2126151068.16...   \n",
-              "14648  1.3.6.1.4.1.5962.99.1.1406625625.143062310.163...   \n",
-              "14755  1.3.6.1.4.1.5962.99.1.1444154427.1890375747.16...   \n",
-              "14855  1.3.6.1.4.1.5962.99.1.1457224429.1516501177.16...   \n",
-              "15005  1.3.6.1.4.1.5962.99.1.1138367295.641551403.163...   \n",
-              "15206  1.3.6.1.4.1.5962.99.1.1456907365.1074542557.16...   \n",
-              "15680  1.3.6.1.4.1.5962.99.1.1444087361.1178802190.16...   \n",
-              "15874  1.3.6.1.4.1.5962.99.1.1417610265.99830249.1637...   \n",
-              "15906  1.3.6.1.4.1.5962.99.1.1146638441.2120788688.16...   \n",
-              "15950  1.3.6.1.4.1.5962.99.1.1161772215.1881002667.16...   \n",
-              "16175  1.3.6.1.4.1.5962.99.1.1144967520.122742132.163...   \n",
-              "16191  1.3.6.1.4.1.5962.99.1.1143764909.1848068707.16...   \n",
-              "16232  1.3.6.1.4.1.5962.99.1.1126803882.1132778094.16...   \n",
-              "16335  1.3.6.1.4.1.5962.99.1.1141705909.1572591725.16...   \n",
-              "16345  1.3.6.1.4.1.5962.99.1.1143767850.1263497533.16...   \n",
-              "16381  1.3.6.1.4.1.5962.99.1.1154860174.1213132183.16...   \n",
-              "16406  1.3.6.1.4.1.5962.99.1.1135751984.1874101819.16...   \n",
-              "16735  1.3.6.1.4.1.5962.99.1.1151740798.1819749829.16...   \n",
-              "16766  1.3.6.1.4.1.5962.99.1.1154103263.946760015.163...   \n",
-              "16945  1.3.6.1.4.1.5962.99.1.1455286618.17992965.1637...   \n",
-              "16963  1.3.6.1.4.1.5962.99.1.1128237937.1740342290.16...   \n",
-              "17176  1.3.6.1.4.1.5962.99.1.1463920700.1096033372.16...   \n",
-              "17503  1.3.6.1.4.1.5962.99.1.1147694984.1297962989.16...   \n",
-              "17580  1.3.6.1.4.1.5962.99.1.1146651654.710261411.163...   \n",
-              "18091  1.3.6.1.4.1.5962.99.1.1137743941.2014985547.16...   \n",
-              "18360  1.3.6.1.4.1.5962.99.1.1461636227.453932127.163...   \n",
-              "18434  1.3.6.1.4.1.5962.99.1.1145282546.1908230261.16...   \n",
-              "18444  1.3.6.1.4.1.5962.99.1.1141305866.208947980.163...   \n",
-              "18538  1.3.6.1.4.1.5962.99.1.1145378496.1299693586.16...   \n",
-              "19462  1.3.6.1.4.1.5962.99.1.3228422447.1812252898.16...   \n",
-              "19765  1.3.6.1.4.1.5962.99.1.3234417202.1975326478.16...   \n",
-              "19949  1.3.6.1.4.1.5962.99.1.3233469531.389116694.163...   \n",
-              "20411  1.3.6.1.4.1.5962.99.1.3228705008.1410236738.16...   \n",
-              "31526  1.3.6.1.4.1.5962.99.1.1867920242.174776288.163...   \n",
-              "31614  1.3.6.1.4.1.5962.99.1.1823402096.1162981339.16...   \n",
-              "31811  1.3.6.1.4.1.5962.99.1.1885027049.1410054045.16...   \n",
-              "31947  1.3.6.1.4.1.5962.99.1.1882880394.960879536.163...   \n",
-              "31971  1.3.6.1.4.1.5962.99.1.1872189692.1253427047.16...   \n",
-              "32186  1.3.6.1.4.1.5962.99.1.1855349546.1988692817.16...   \n",
-              "32909  1.3.6.1.4.1.5962.99.1.3417255448.454220613.163...   \n",
-              "33086  1.3.6.1.4.1.5962.99.1.1863242716.389284359.163...   \n",
-              "33133  1.3.6.1.4.1.5962.99.1.1840857857.447664210.163...   \n",
-              "33552  1.3.6.1.4.1.5962.99.1.1844771749.1538825151.16...   \n",
-              "33557  1.3.6.1.4.1.5962.99.1.3437257475.1853292570.16...   \n",
-              "33939  1.3.6.1.4.1.5962.99.1.1864362873.507169178.163...   \n",
-              "34622  1.3.6.1.4.1.5962.99.1.1836880888.275485325.163...   \n",
-              "35011  1.3.6.1.4.1.5962.99.1.1822830854.365548153.163...   \n",
-              "35084  1.3.6.1.4.1.5962.99.1.1846763795.2013686380.16...   \n",
+              "14816  1.3.6.1.4.1.5962.99.1.1154860174.1213132183.16...   \n",
+              "15019  1.3.6.1.4.1.5962.99.1.1455286618.17992965.1637...   \n",
+              "15090  1.3.6.1.4.1.5962.99.1.1151740798.1819749829.16...   \n",
+              "15096  1.3.6.1.4.1.5962.99.1.1135751984.1874101819.16...   \n",
+              "15171  1.3.6.1.4.1.5962.99.1.1143767850.1263497533.16...   \n",
+              "15197  1.3.6.1.4.1.5962.99.1.1128237937.1740342290.16...   \n",
+              "15302  1.3.6.1.4.1.5962.99.1.1463920700.1096033372.16...   \n",
+              "15335  1.3.6.1.4.1.5962.99.1.1154103263.946760015.163...   \n",
+              "15345  1.3.6.1.4.1.5962.99.1.1141705909.1572591725.16...   \n",
+              "15691  1.3.6.1.4.1.5962.99.1.1145378496.1299693586.16...   \n",
+              "15704  1.3.6.1.4.1.5962.99.1.1141305866.208947980.163...   \n",
+              "15865  1.3.6.1.4.1.5962.99.1.1461636227.453932127.163...   \n",
+              "16123  1.3.6.1.4.1.5962.99.1.1145282546.1908230261.16...   \n",
+              "16445  1.3.6.1.4.1.5962.99.1.1137743941.2014985547.16...   \n",
+              "16945  1.3.6.1.4.1.5962.99.1.1146651654.710261411.163...   \n",
+              "17038  1.3.6.1.4.1.5962.99.1.1147694984.1297962989.16...   \n",
+              "17290  1.3.6.1.4.1.5962.99.1.1126803882.1132778094.16...   \n",
+              "17319  1.3.6.1.4.1.5962.99.1.1161772215.1881002667.16...   \n",
+              "17383  1.3.6.1.4.1.5962.99.1.1444087361.1178802190.16...   \n",
+              "17435  1.3.6.1.4.1.5962.99.1.1143764909.1848068707.16...   \n",
+              "17515  1.3.6.1.4.1.5962.99.1.1417610265.99830249.1637...   \n",
+              "17660  1.3.6.1.4.1.5962.99.1.1144967520.122742132.163...   \n",
+              "17941  1.3.6.1.4.1.5962.99.1.1146638441.2120788688.16...   \n",
+              "18153  1.3.6.1.4.1.5962.99.1.1456907365.1074542557.16...   \n",
+              "18330  1.3.6.1.4.1.5962.99.1.1406625625.143062310.163...   \n",
+              "18580  1.3.6.1.4.1.5962.99.1.1457224429.1516501177.16...   \n",
+              "18595  1.3.6.1.4.1.5962.99.1.1444154427.1890375747.16...   \n",
+              "18631  1.3.6.1.4.1.5962.99.1.1158178852.2126151068.16...   \n",
+              "18771  1.3.6.1.4.1.5962.99.1.1138367295.641551403.163...   \n",
+              "19185  1.3.6.1.4.1.5962.99.1.3233469531.389116694.163...   \n",
+              "19190  1.3.6.1.4.1.5962.99.1.3234417202.1975326478.16...   \n",
+              "20105  1.3.6.1.4.1.5962.99.1.3228705008.1410236738.16...   \n",
+              "20408  1.3.6.1.4.1.5962.99.1.3228422447.1812252898.16...   \n",
+              "31350  1.3.6.1.4.1.5962.99.1.1863242716.389284359.163...   \n",
+              "31412  1.3.6.1.4.1.5962.99.1.1844771749.1538825151.16...   \n",
+              "31670  1.3.6.1.4.1.5962.99.1.1840857857.447664210.163...   \n",
+              "31703  1.3.6.1.4.1.5962.99.1.3417255448.454220613.163...   \n",
+              "31864  1.3.6.1.4.1.5962.99.1.3437257475.1853292570.16...   \n",
+              "32593  1.3.6.1.4.1.5962.99.1.1836880888.275485325.163...   \n",
+              "32729  1.3.6.1.4.1.5962.99.1.1822830854.365548153.163...   \n",
+              "32742  1.3.6.1.4.1.5962.99.1.1846763795.2013686380.16...   \n",
+              "32898  1.3.6.1.4.1.5962.99.1.1864362873.507169178.163...   \n",
+              "34027  1.3.6.1.4.1.5962.99.1.1855349546.1988692817.16...   \n",
+              "34406  1.3.6.1.4.1.5962.99.1.1885027049.1410054045.16...   \n",
+              "34646  1.3.6.1.4.1.5962.99.1.1882880394.960879536.163...   \n",
+              "34855  1.3.6.1.4.1.5962.99.1.1872189692.1253427047.16...   \n",
+              "34898  1.3.6.1.4.1.5962.99.1.1867920242.174776288.163...   \n",
+              "35199  1.3.6.1.4.1.5962.99.1.1823402096.1162981339.16...   \n",
               "\n",
               "      embeddingMedium_CodeMeaning embeddingMedium_code_designator_value_str  \\\n",
-              "14642    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "14648    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "14755    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "14855    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15005    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15206    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15680    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15874    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15906    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "15950    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16175    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16191    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16232    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16335    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16345    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16381    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16406    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16735    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16766    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "14816    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15019    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15090    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15096    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15171    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15197    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15302    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15335    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15345    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15691    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15704    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "15865    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "16123    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "16445    [Tissue freezing medium]                           [SCT:433469005]   \n",
               "16945    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "16963    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "17176    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "17503    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "17580    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "18091    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "18360    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "18434    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "18444    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "18538    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "19462    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "19765    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "19949    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "20411    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "31526    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "31614    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "31811    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "31947    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "31971    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "32186    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "32909    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "33086    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "33133    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "33552    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "33557    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "33939    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "34622    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "35011    [Tissue freezing medium]                           [SCT:433469005]   \n",
-              "35084    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17038    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17290    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17319    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17383    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17435    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17515    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17660    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "17941    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18153    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18330    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18580    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18595    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18631    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "18771    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "19185    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "19190    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "20105    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "20408    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "31350    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "31412    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "31670    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "31703    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "31864    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "32593    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "32729    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "32742    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "32898    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "34027    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "34406    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "34646    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "34855    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "34898    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "35199    [Tissue freezing medium]                           [SCT:433469005]   \n",
               "\n",
               "      tissueFixative_CodeMeaning tissueFixative_code_designator_value_str  \\\n",
-              "14642                         []                                       []   \n",
-              "14648                         []                                       []   \n",
-              "14755                         []                                       []   \n",
-              "14855                         []                                       []   \n",
-              "15005                         []                                       []   \n",
-              "15206                         []                                       []   \n",
-              "15680                         []                                       []   \n",
-              "15874                         []                                       []   \n",
-              "15906                         []                                       []   \n",
-              "15950                         []                                       []   \n",
-              "16175                         []                                       []   \n",
-              "16191                         []                                       []   \n",
-              "16232                         []                                       []   \n",
-              "16335                         []                                       []   \n",
-              "16345                         []                                       []   \n",
-              "16381                         []                                       []   \n",
-              "16406                         []                                       []   \n",
-              "16735                         []                                       []   \n",
-              "16766                         []                                       []   \n",
+              "14816                         []                                       []   \n",
+              "15019                         []                                       []   \n",
+              "15090                         []                                       []   \n",
+              "15096                         []                                       []   \n",
+              "15171                         []                                       []   \n",
+              "15197                         []                                       []   \n",
+              "15302                         []                                       []   \n",
+              "15335                         []                                       []   \n",
+              "15345                         []                                       []   \n",
+              "15691                         []                                       []   \n",
+              "15704                         []                                       []   \n",
+              "15865                         []                                       []   \n",
+              "16123                         []                                       []   \n",
+              "16445                         []                                       []   \n",
               "16945                         []                                       []   \n",
-              "16963                         []                                       []   \n",
-              "17176                         []                                       []   \n",
-              "17503                         []                                       []   \n",
-              "17580                         []                                       []   \n",
-              "18091                         []                                       []   \n",
-              "18360                         []                                       []   \n",
-              "18434                         []                                       []   \n",
-              "18444                         []                                       []   \n",
-              "18538                         []                                       []   \n",
-              "19462                         []                                       []   \n",
-              "19765                         []                                       []   \n",
-              "19949                         []                                       []   \n",
-              "20411                         []                                       []   \n",
-              "31526                         []                                       []   \n",
-              "31614                         []                                       []   \n",
-              "31811                         []                                       []   \n",
-              "31947                         []                                       []   \n",
-              "31971                         []                                       []   \n",
-              "32186                         []                                       []   \n",
-              "32909                         []                                       []   \n",
-              "33086                         []                                       []   \n",
-              "33133                         []                                       []   \n",
-              "33552                         []                                       []   \n",
-              "33557                         []                                       []   \n",
-              "33939                         []                                       []   \n",
-              "34622                         []                                       []   \n",
-              "35011                         []                                       []   \n",
-              "35084                         []                                       []   \n",
+              "17038                         []                                       []   \n",
+              "17290                         []                                       []   \n",
+              "17319                         []                                       []   \n",
+              "17383                         []                                       []   \n",
+              "17435                         []                                       []   \n",
+              "17515                         []                                       []   \n",
+              "17660                         []                                       []   \n",
+              "17941                         []                                       []   \n",
+              "18153                         []                                       []   \n",
+              "18330                         []                                       []   \n",
+              "18580                         []                                       []   \n",
+              "18595                         []                                       []   \n",
+              "18631                         []                                       []   \n",
+              "18771                         []                                       []   \n",
+              "19185                         []                                       []   \n",
+              "19190                         []                                       []   \n",
+              "20105                         []                                       []   \n",
+              "20408                         []                                       []   \n",
+              "31350                         []                                       []   \n",
+              "31412                         []                                       []   \n",
+              "31670                         []                                       []   \n",
+              "31703                         []                                       []   \n",
+              "31864                         []                                       []   \n",
+              "32593                         []                                       []   \n",
+              "32729                         []                                       []   \n",
+              "32742                         []                                       []   \n",
+              "32898                         []                                       []   \n",
+              "34027                         []                                       []   \n",
+              "34406                         []                                       []   \n",
+              "34646                         []                                       []   \n",
+              "34855                         []                                       []   \n",
+              "34898                         []                                       []   \n",
+              "35199                         []                                       []   \n",
               "\n",
               "                  staining_usingSubstance_CodeMeaning  \\\n",
-              "14642  [hematoxylin stain, water soluble eosin stain]   \n",
-              "14648  [water soluble eosin stain, hematoxylin stain]   \n",
-              "14755  [hematoxylin stain, water soluble eosin stain]   \n",
-              "14855  [hematoxylin stain, water soluble eosin stain]   \n",
-              "15005  [water soluble eosin stain, hematoxylin stain]   \n",
-              "15206  [water soluble eosin stain, hematoxylin stain]   \n",
-              "15680  [water soluble eosin stain, hematoxylin stain]   \n",
-              "15874  [hematoxylin stain, water soluble eosin stain]   \n",
-              "15906  [water soluble eosin stain, hematoxylin stain]   \n",
-              "15950  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16175  [hematoxylin stain, water soluble eosin stain]   \n",
-              "16191  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16232  [hematoxylin stain, water soluble eosin stain]   \n",
-              "16335  [hematoxylin stain, water soluble eosin stain]   \n",
-              "16345  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16381  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16406  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16735  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16766  [water soluble eosin stain, hematoxylin stain]   \n",
+              "14816  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15019  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15090  [hematoxylin stain, water soluble eosin stain]   \n",
+              "15096  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15171  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15197  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15302  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15335  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15345  [hematoxylin stain, water soluble eosin stain]   \n",
+              "15691  [water soluble eosin stain, hematoxylin stain]   \n",
+              "15704  [hematoxylin stain, water soluble eosin stain]   \n",
+              "15865  [hematoxylin stain, water soluble eosin stain]   \n",
+              "16123  [hematoxylin stain, water soluble eosin stain]   \n",
+              "16445  [hematoxylin stain, water soluble eosin stain]   \n",
               "16945  [water soluble eosin stain, hematoxylin stain]   \n",
-              "16963  [water soluble eosin stain, hematoxylin stain]   \n",
-              "17176  [water soluble eosin stain, hematoxylin stain]   \n",
-              "17503  [hematoxylin stain, water soluble eosin stain]   \n",
-              "17580  [water soluble eosin stain, hematoxylin stain]   \n",
-              "18091  [water soluble eosin stain, hematoxylin stain]   \n",
-              "18360  [hematoxylin stain, water soluble eosin stain]   \n",
-              "18434  [hematoxylin stain, water soluble eosin stain]   \n",
-              "18444  [hematoxylin stain, water soluble eosin stain]   \n",
-              "18538  [water soluble eosin stain, hematoxylin stain]   \n",
-              "19462  [water soluble eosin stain, hematoxylin stain]   \n",
-              "19765  [hematoxylin stain, water soluble eosin stain]   \n",
-              "19949  [hematoxylin stain, water soluble eosin stain]   \n",
-              "20411  [water soluble eosin stain, hematoxylin stain]   \n",
-              "31526  [hematoxylin stain, water soluble eosin stain]   \n",
-              "31614  [hematoxylin stain, water soluble eosin stain]   \n",
-              "31811  [hematoxylin stain, water soluble eosin stain]   \n",
-              "31947  [water soluble eosin stain, hematoxylin stain]   \n",
-              "31971  [water soluble eosin stain, hematoxylin stain]   \n",
-              "32186  [water soluble eosin stain, hematoxylin stain]   \n",
-              "32909  [water soluble eosin stain, hematoxylin stain]   \n",
-              "33086  [water soluble eosin stain, hematoxylin stain]   \n",
-              "33133  [water soluble eosin stain, hematoxylin stain]   \n",
-              "33552  [water soluble eosin stain, hematoxylin stain]   \n",
-              "33557  [water soluble eosin stain, hematoxylin stain]   \n",
-              "33939  [water soluble eosin stain, hematoxylin stain]   \n",
-              "34622  [water soluble eosin stain, hematoxylin stain]   \n",
-              "35011  [hematoxylin stain, water soluble eosin stain]   \n",
-              "35084  [hematoxylin stain, water soluble eosin stain]   \n",
+              "17038  [hematoxylin stain, water soluble eosin stain]   \n",
+              "17290  [hematoxylin stain, water soluble eosin stain]   \n",
+              "17319  [water soluble eosin stain, hematoxylin stain]   \n",
+              "17383  [hematoxylin stain, water soluble eosin stain]   \n",
+              "17435  [water soluble eosin stain, hematoxylin stain]   \n",
+              "17515  [hematoxylin stain, water soluble eosin stain]   \n",
+              "17660  [water soluble eosin stain, hematoxylin stain]   \n",
+              "17941  [water soluble eosin stain, hematoxylin stain]   \n",
+              "18153  [water soluble eosin stain, hematoxylin stain]   \n",
+              "18330  [water soluble eosin stain, hematoxylin stain]   \n",
+              "18580  [hematoxylin stain, water soluble eosin stain]   \n",
+              "18595  [hematoxylin stain, water soluble eosin stain]   \n",
+              "18631  [hematoxylin stain, water soluble eosin stain]   \n",
+              "18771  [hematoxylin stain, water soluble eosin stain]   \n",
+              "19185  [hematoxylin stain, water soluble eosin stain]   \n",
+              "19190  [hematoxylin stain, water soluble eosin stain]   \n",
+              "20105  [water soluble eosin stain, hematoxylin stain]   \n",
+              "20408  [water soluble eosin stain, hematoxylin stain]   \n",
+              "31350  [water soluble eosin stain, hematoxylin stain]   \n",
+              "31412  [water soluble eosin stain, hematoxylin stain]   \n",
+              "31670  [water soluble eosin stain, hematoxylin stain]   \n",
+              "31703  [water soluble eosin stain, hematoxylin stain]   \n",
+              "31864  [water soluble eosin stain, hematoxylin stain]   \n",
+              "32593  [water soluble eosin stain, hematoxylin stain]   \n",
+              "32729  [hematoxylin stain, water soluble eosin stain]   \n",
+              "32742  [hematoxylin stain, water soluble eosin stain]   \n",
+              "32898  [hematoxylin stain, water soluble eosin stain]   \n",
+              "34027  [water soluble eosin stain, hematoxylin stain]   \n",
+              "34406  [hematoxylin stain, water soluble eosin stain]   \n",
+              "34646  [water soluble eosin stain, hematoxylin stain]   \n",
+              "34855  [water soluble eosin stain, hematoxylin stain]   \n",
+              "34898  [hematoxylin stain, water soluble eosin stain]   \n",
+              "35199  [hematoxylin stain, water soluble eosin stain]   \n",
               "\n",
               "      staining_usingSubstance_code_designator_value_str  min_PixelSpacing_2sf  \\\n",
-              "14642                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "14648                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "14755                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "14855                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "15005                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "15206                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "15680                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "15874                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "15906                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "15950                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16175                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "16191                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16232                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "16335                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "16345                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16381                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16406                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16735                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16766                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "14816                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15019                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15090                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "15096                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15171                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15197                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15302                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15335                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15345                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "15691                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "15704                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "15865                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "16123                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "16445                      [SCT:12710003, SCT:36879007]                 0.002   \n",
               "16945                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "16963                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "17176                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "17503                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "17580                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "18091                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "18360                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "18434                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "18444                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "18538                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "19462                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "19765                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "19949                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "20411                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "31526                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "31614                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "31811                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "31947                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "31971                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "32186                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "32909                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "33086                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "33133                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "33552                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "33557                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "33939                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "34622                      [SCT:36879007, SCT:12710003]                 0.002   \n",
-              "35011                      [SCT:12710003, SCT:36879007]                 0.002   \n",
-              "35084                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "17038                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "17290                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "17319                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "17383                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "17435                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "17515                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "17660                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "17941                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "18153                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "18330                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "18580                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "18595                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "18631                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "18771                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "19185                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "19190                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "20105                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "20408                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "31350                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "31412                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "31670                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "31703                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "31864                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "32593                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "32729                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "32742                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "32898                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "34027                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "34406                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "34646                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "34855                      [SCT:36879007, SCT:12710003]                 0.002   \n",
+              "34898                      [SCT:12710003, SCT:36879007]                 0.002   \n",
+              "35199                      [SCT:12710003, SCT:36879007]                 0.002   \n",
               "\n",
               "       max_TotalPixelMatrixColumns  max_TotalPixelMatrixRows  \\\n",
-              "14642                        10287                      3969   \n",
-              "14648                         7014                      4359   \n",
-              "14755                         7949                      8641   \n",
-              "14855                         9352                      4472   \n",
-              "15005                         5143                      5523   \n",
-              "15206                         4208                      8737   \n",
-              "15680                         7014                      4390   \n",
-              "15874                         9352                      7152   \n",
-              "15906                         9352                      4666   \n",
-              "15950                        11223                      6210   \n",
-              "16175                         4676                      5103   \n",
-              "16191                         4676                      5199   \n",
-              "16232                        10287                      4387   \n",
-              "16335                         5611                      5238   \n",
-              "16345                         4676                      5106   \n",
-              "16381                        12626                      4118   \n",
-              "16406                         5143                      5491   \n",
-              "16735                         4676                      4912   \n",
-              "16766                        10755                      4134   \n",
-              "16945                         7949                      4621   \n",
-              "16963                        13093                      4248   \n",
-              "17176                         3741                      4490   \n",
-              "17503                        11223                      5668   \n",
-              "17580                         4208                      5260   \n",
-              "18091                         5143                      5491   \n",
-              "18360                         6546                     10221   \n",
-              "18434                        11690                      5450   \n",
-              "18444                        12626                      2971   \n",
-              "18538                         5143                      5393   \n",
-              "19462                         7014                      4485   \n",
-              "19765                        10287                      5758   \n",
-              "19949                        11690                      7873   \n",
-              "20411                         7014                      5156   \n",
-              "31526                         7014                      6335   \n",
-              "31614                         6546                      7225   \n",
-              "31811                        11223                     10262   \n",
-              "31947                         6079                      6902   \n",
-              "31971                        11690                     10266   \n",
-              "32186                        10287                      7222   \n",
-              "32909                         8417                      6602   \n",
-              "33086                         6546                      7127   \n",
-              "33133                         7949                      7843   \n",
-              "33552                        10287                      6552   \n",
-              "33557                         8417                      6569   \n",
-              "33939                         9352                      8139   \n",
-              "34622                        10755                      6942   \n",
-              "35011                         8885                      8265   \n",
-              "35084                         7949                      7489   \n",
+              "14816                        12626                      4118   \n",
+              "15019                         7949                      4621   \n",
+              "15090                         4676                      4912   \n",
+              "15096                         5143                      5491   \n",
+              "15171                         4676                      5106   \n",
+              "15197                        13093                      4248   \n",
+              "15302                         3741                      4490   \n",
+              "15335                        10755                      4134   \n",
+              "15345                         5611                      5238   \n",
+              "15691                         5143                      5393   \n",
+              "15704                        12626                      2971   \n",
+              "15865                         6546                     10221   \n",
+              "16123                        11690                      5450   \n",
+              "16445                         5143                      5491   \n",
+              "16945                         4208                      5260   \n",
+              "17038                        11223                      5668   \n",
+              "17290                        10287                      4387   \n",
+              "17319                        11223                      6210   \n",
+              "17383                         7014                      4390   \n",
+              "17435                         4676                      5199   \n",
+              "17515                         9352                      7152   \n",
+              "17660                         4676                      5103   \n",
+              "17941                         9352                      4666   \n",
+              "18153                         4208                      8737   \n",
+              "18330                         7014                      4359   \n",
+              "18580                         9352                      4472   \n",
+              "18595                         7949                      8641   \n",
+              "18631                        10287                      3969   \n",
+              "18771                         5143                      5523   \n",
+              "19185                        11690                      7873   \n",
+              "19190                        10287                      5758   \n",
+              "20105                         7014                      5156   \n",
+              "20408                         7014                      4485   \n",
+              "31350                         6546                      7127   \n",
+              "31412                        10287                      6552   \n",
+              "31670                         7949                      7843   \n",
+              "31703                         8417                      6602   \n",
+              "31864                         8417                      6569   \n",
+              "32593                        10755                      6942   \n",
+              "32729                         8885                      8265   \n",
+              "32742                         7949                      7489   \n",
+              "32898                         9352                      8139   \n",
+              "34027                        10287                      7222   \n",
+              "34406                        11223                     10262   \n",
+              "34646                         6079                      6902   \n",
+              "34855                        11690                     10266   \n",
+              "34898                         7014                      6335   \n",
+              "35199                         6546                      7225   \n",
               "\n",
               "       ObjectiveLensPower primaryAnatomicStructure_code_designator_value_str  \\\n",
-              "14642                   5                                       SCT:12738006   \n",
-              "14648                   5                                       SCT:12738006   \n",
-              "14755                   5                                       SCT:12738006   \n",
-              "14855                   5                                       SCT:12738006   \n",
-              "15005                   5                                       SCT:12738006   \n",
-              "15206                   5                                       SCT:12738006   \n",
-              "15680                   5                                       SCT:12738006   \n",
-              "15874                   5                                       SCT:12738006   \n",
-              "15906                   5                                       SCT:12738006   \n",
-              "15950                   5                                       SCT:12738006   \n",
-              "16175                   5                                       SCT:12738006   \n",
-              "16191                   5                                       SCT:12738006   \n",
-              "16232                   5                                       SCT:12738006   \n",
-              "16335                   5                                       SCT:12738006   \n",
-              "16345                   5                                       SCT:12738006   \n",
-              "16381                   5                                       SCT:12738006   \n",
-              "16406                   5                                       SCT:12738006   \n",
-              "16735                   5                                       SCT:12738006   \n",
-              "16766                   5                                       SCT:12738006   \n",
+              "14816                   5                                       SCT:12738006   \n",
+              "15019                   5                                       SCT:12738006   \n",
+              "15090                   5                                       SCT:12738006   \n",
+              "15096                   5                                       SCT:12738006   \n",
+              "15171                   5                                       SCT:12738006   \n",
+              "15197                   5                                       SCT:12738006   \n",
+              "15302                   5                                       SCT:12738006   \n",
+              "15335                   5                                       SCT:12738006   \n",
+              "15345                   5                                       SCT:12738006   \n",
+              "15691                   5                                       SCT:12738006   \n",
+              "15704                   5                                       SCT:12738006   \n",
+              "15865                   5                                       SCT:12738006   \n",
+              "16123                   5                                       SCT:12738006   \n",
+              "16445                   5                                       SCT:12738006   \n",
               "16945                   5                                       SCT:12738006   \n",
-              "16963                   5                                       SCT:12738006   \n",
-              "17176                   5                                       SCT:12738006   \n",
-              "17503                   5                                       SCT:12738006   \n",
-              "17580                   5                                       SCT:12738006   \n",
-              "18091                   5                                       SCT:12738006   \n",
-              "18360                   5                                       SCT:12738006   \n",
-              "18434                   5                                       SCT:12738006   \n",
-              "18444                   5                                       SCT:12738006   \n",
-              "18538                   5                                       SCT:12738006   \n",
-              "19462                   5                                       SCT:71854001   \n",
-              "19765                   5                                       SCT:71854001   \n",
-              "19949                   5                                       SCT:71854001   \n",
-              "20411                   5                                       SCT:71854001   \n",
-              "31526                   5                                       SCT:64033007   \n",
-              "31614                   5                                       SCT:64033007   \n",
-              "31811                   5                                       SCT:64033007   \n",
-              "31947                   5                                       SCT:64033007   \n",
-              "31971                   5                                       SCT:64033007   \n",
-              "32186                   5                                       SCT:64033007   \n",
-              "32909                   5                                       SCT:64033007   \n",
-              "33086                   5                                       SCT:64033007   \n",
-              "33133                   5                                       SCT:64033007   \n",
-              "33552                   5                                       SCT:64033007   \n",
-              "33557                   5                                       SCT:64033007   \n",
-              "33939                   5                                       SCT:64033007   \n",
-              "34622                   5                                       SCT:64033007   \n",
-              "35011                   5                                       SCT:64033007   \n",
-              "35084                   5                                       SCT:64033007   \n",
+              "17038                   5                                       SCT:12738006   \n",
+              "17290                   5                                       SCT:12738006   \n",
+              "17319                   5                                       SCT:12738006   \n",
+              "17383                   5                                       SCT:12738006   \n",
+              "17435                   5                                       SCT:12738006   \n",
+              "17515                   5                                       SCT:12738006   \n",
+              "17660                   5                                       SCT:12738006   \n",
+              "17941                   5                                       SCT:12738006   \n",
+              "18153                   5                                       SCT:12738006   \n",
+              "18330                   5                                       SCT:12738006   \n",
+              "18580                   5                                       SCT:12738006   \n",
+              "18595                   5                                       SCT:12738006   \n",
+              "18631                   5                                       SCT:12738006   \n",
+              "18771                   5                                       SCT:12738006   \n",
+              "19185                   5                                       SCT:71854001   \n",
+              "19190                   5                                       SCT:71854001   \n",
+              "20105                   5                                       SCT:71854001   \n",
+              "20408                   5                                       SCT:71854001   \n",
+              "31350                   5                                       SCT:64033007   \n",
+              "31412                   5                                       SCT:64033007   \n",
+              "31670                   5                                       SCT:64033007   \n",
+              "31703                   5                                       SCT:64033007   \n",
+              "31864                   5                                       SCT:64033007   \n",
+              "32593                   5                                       SCT:64033007   \n",
+              "32729                   5                                       SCT:64033007   \n",
+              "32742                   5                                       SCT:64033007   \n",
+              "32898                   5                                       SCT:64033007   \n",
+              "34027                   5                                       SCT:64033007   \n",
+              "34406                   5                                       SCT:64033007   \n",
+              "34646                   5                                       SCT:64033007   \n",
+              "34855                   5                                       SCT:64033007   \n",
+              "34898                   5                                       SCT:64033007   \n",
+              "35199                   5                                       SCT:64033007   \n",
               "\n",
               "      primaryAnatomicStructure_CodeMeaning  \\\n",
-              "14642                                Brain   \n",
-              "14648                                Brain   \n",
-              "14755                                Brain   \n",
-              "14855                                Brain   \n",
-              "15005                                Brain   \n",
-              "15206                                Brain   \n",
-              "15680                                Brain   \n",
-              "15874                                Brain   \n",
-              "15906                                Brain   \n",
-              "15950                                Brain   \n",
-              "16175                                Brain   \n",
-              "16191                                Brain   \n",
-              "16232                                Brain   \n",
-              "16335                                Brain   \n",
-              "16345                                Brain   \n",
-              "16381                                Brain   \n",
-              "16406                                Brain   \n",
-              "16735                                Brain   \n",
-              "16766                                Brain   \n",
+              "14816                                Brain   \n",
+              "15019                                Brain   \n",
+              "15090                                Brain   \n",
+              "15096                                Brain   \n",
+              "15171                                Brain   \n",
+              "15197                                Brain   \n",
+              "15302                                Brain   \n",
+              "15335                                Brain   \n",
+              "15345                                Brain   \n",
+              "15691                                Brain   \n",
+              "15704                                Brain   \n",
+              "15865                                Brain   \n",
+              "16123                                Brain   \n",
+              "16445                                Brain   \n",
               "16945                                Brain   \n",
-              "16963                                Brain   \n",
-              "17176                                Brain   \n",
-              "17503                                Brain   \n",
-              "17580                                Brain   \n",
-              "18091                                Brain   \n",
-              "18360                                Brain   \n",
-              "18434                                Brain   \n",
-              "18444                                Brain   \n",
-              "18538                                Brain   \n",
-              "19462                                Colon   \n",
-              "19765                                Colon   \n",
-              "19949                                Colon   \n",
-              "20411                                Colon   \n",
-              "31526                               Kidney   \n",
-              "31614                               Kidney   \n",
-              "31811                               Kidney   \n",
-              "31947                               Kidney   \n",
-              "31971                               Kidney   \n",
-              "32186                               Kidney   \n",
-              "32909                               Kidney   \n",
-              "33086                               Kidney   \n",
-              "33133                               Kidney   \n",
-              "33552                               Kidney   \n",
-              "33557                               Kidney   \n",
-              "33939                               Kidney   \n",
-              "34622                               Kidney   \n",
-              "35011                               Kidney   \n",
-              "35084                               Kidney   \n",
+              "17038                                Brain   \n",
+              "17290                                Brain   \n",
+              "17319                                Brain   \n",
+              "17383                                Brain   \n",
+              "17435                                Brain   \n",
+              "17515                                Brain   \n",
+              "17660                                Brain   \n",
+              "17941                                Brain   \n",
+              "18153                                Brain   \n",
+              "18330                                Brain   \n",
+              "18580                                Brain   \n",
+              "18595                                Brain   \n",
+              "18631                                Brain   \n",
+              "18771                                Brain   \n",
+              "19185                                Colon   \n",
+              "19190                                Colon   \n",
+              "20105                                Colon   \n",
+              "20408                                Colon   \n",
+              "31350                               Kidney   \n",
+              "31412                               Kidney   \n",
+              "31670                               Kidney   \n",
+              "31703                               Kidney   \n",
+              "31864                               Kidney   \n",
+              "32593                               Kidney   \n",
+              "32729                               Kidney   \n",
+              "32742                               Kidney   \n",
+              "32898                               Kidney   \n",
+              "34027                               Kidney   \n",
+              "34406                               Kidney   \n",
+              "34646                               Kidney   \n",
+              "34855                               Kidney   \n",
+              "34898                               Kidney   \n",
+              "35199                               Kidney   \n",
               "\n",
               "      primaryAnatomicStructureModifier_code_designator_value_str  \\\n",
-              "14642                                       SCT:86049000           \n",
-              "14648                                       SCT:86049000           \n",
-              "14755                                       SCT:86049000           \n",
-              "14855                                       SCT:86049000           \n",
-              "15005                                       SCT:86049000           \n",
-              "15206                                       SCT:86049000           \n",
-              "15680                                       SCT:86049000           \n",
-              "15874                                       SCT:86049000           \n",
-              "15906                                       SCT:86049000           \n",
-              "15950                                       SCT:86049000           \n",
-              "16175                                       SCT:86049000           \n",
-              "16191                                       SCT:86049000           \n",
-              "16232                                       SCT:86049000           \n",
-              "16335                                       SCT:86049000           \n",
-              "16345                                       SCT:86049000           \n",
-              "16381                                       SCT:86049000           \n",
-              "16406                                       SCT:86049000           \n",
-              "16735                                       SCT:86049000           \n",
-              "16766                                       SCT:86049000           \n",
+              "14816                                       SCT:86049000           \n",
+              "15019                                       SCT:86049000           \n",
+              "15090                                       SCT:86049000           \n",
+              "15096                                       SCT:86049000           \n",
+              "15171                                       SCT:86049000           \n",
+              "15197                                       SCT:86049000           \n",
+              "15302                                       SCT:86049000           \n",
+              "15335                                       SCT:86049000           \n",
+              "15345                                       SCT:86049000           \n",
+              "15691                                       SCT:86049000           \n",
+              "15704                                       SCT:86049000           \n",
+              "15865                                       SCT:86049000           \n",
+              "16123                                       SCT:86049000           \n",
+              "16445                                       SCT:86049000           \n",
               "16945                                       SCT:86049000           \n",
-              "16963                                       SCT:86049000           \n",
-              "17176                                       SCT:86049000           \n",
-              "17503                                       SCT:86049000           \n",
-              "17580                                       SCT:86049000           \n",
-              "18091                                       SCT:86049000           \n",
-              "18360                                       SCT:86049000           \n",
-              "18434                                       SCT:86049000           \n",
-              "18444                                       SCT:86049000           \n",
-              "18538                                       SCT:86049000           \n",
-              "19462                                       SCT:86049000           \n",
-              "19765                                       SCT:86049000           \n",
-              "19949                                       SCT:86049000           \n",
-              "20411                                       SCT:86049000           \n",
-              "31526                                       SCT:86049000           \n",
-              "31614                                       SCT:86049000           \n",
-              "31811                                       SCT:86049000           \n",
-              "31947                                       SCT:17621005           \n",
-              "31971                                       SCT:86049000           \n",
-              "32186                                       SCT:86049000           \n",
-              "32909                                       SCT:86049000           \n",
-              "33086                                       SCT:86049000           \n",
-              "33133                                       SCT:86049000           \n",
-              "33552                                       SCT:86049000           \n",
-              "33557                                       SCT:86049000           \n",
-              "33939                                       SCT:86049000           \n",
-              "34622                                       SCT:86049000           \n",
-              "35011                                       SCT:86049000           \n",
-              "35084                                       SCT:17621005           \n",
+              "17038                                       SCT:86049000           \n",
+              "17290                                       SCT:86049000           \n",
+              "17319                                       SCT:86049000           \n",
+              "17383                                       SCT:86049000           \n",
+              "17435                                       SCT:86049000           \n",
+              "17515                                       SCT:86049000           \n",
+              "17660                                       SCT:86049000           \n",
+              "17941                                       SCT:86049000           \n",
+              "18153                                       SCT:86049000           \n",
+              "18330                                       SCT:86049000           \n",
+              "18580                                       SCT:86049000           \n",
+              "18595                                       SCT:86049000           \n",
+              "18631                                       SCT:86049000           \n",
+              "18771                                       SCT:86049000           \n",
+              "19185                                       SCT:86049000           \n",
+              "19190                                       SCT:86049000           \n",
+              "20105                                       SCT:86049000           \n",
+              "20408                                       SCT:86049000           \n",
+              "31350                                       SCT:86049000           \n",
+              "31412                                       SCT:86049000           \n",
+              "31670                                       SCT:86049000           \n",
+              "31703                                       SCT:86049000           \n",
+              "31864                                       SCT:86049000           \n",
+              "32593                                       SCT:86049000           \n",
+              "32729                                       SCT:86049000           \n",
+              "32742                                       SCT:17621005           \n",
+              "32898                                       SCT:86049000           \n",
+              "34027                                       SCT:86049000           \n",
+              "34406                                       SCT:86049000           \n",
+              "34646                                       SCT:17621005           \n",
+              "34855                                       SCT:86049000           \n",
+              "34898                                       SCT:86049000           \n",
+              "35199                                       SCT:86049000           \n",
               "\n",
               "      primaryAnatomicStructureModifier_CodeMeaning  \\\n",
-              "14642                            Neoplasm, Primary   \n",
-              "14648                            Neoplasm, Primary   \n",
-              "14755                            Neoplasm, Primary   \n",
-              "14855                            Neoplasm, Primary   \n",
-              "15005                            Neoplasm, Primary   \n",
-              "15206                            Neoplasm, Primary   \n",
-              "15680                            Neoplasm, Primary   \n",
-              "15874                            Neoplasm, Primary   \n",
-              "15906                            Neoplasm, Primary   \n",
-              "15950                            Neoplasm, Primary   \n",
-              "16175                            Neoplasm, Primary   \n",
-              "16191                            Neoplasm, Primary   \n",
-              "16232                            Neoplasm, Primary   \n",
-              "16335                            Neoplasm, Primary   \n",
-              "16345                            Neoplasm, Primary   \n",
-              "16381                            Neoplasm, Primary   \n",
-              "16406                            Neoplasm, Primary   \n",
-              "16735                            Neoplasm, Primary   \n",
-              "16766                            Neoplasm, Primary   \n",
+              "14816                            Neoplasm, Primary   \n",
+              "15019                            Neoplasm, Primary   \n",
+              "15090                            Neoplasm, Primary   \n",
+              "15096                            Neoplasm, Primary   \n",
+              "15171                            Neoplasm, Primary   \n",
+              "15197                            Neoplasm, Primary   \n",
+              "15302                            Neoplasm, Primary   \n",
+              "15335                            Neoplasm, Primary   \n",
+              "15345                            Neoplasm, Primary   \n",
+              "15691                            Neoplasm, Primary   \n",
+              "15704                            Neoplasm, Primary   \n",
+              "15865                            Neoplasm, Primary   \n",
+              "16123                            Neoplasm, Primary   \n",
+              "16445                            Neoplasm, Primary   \n",
               "16945                            Neoplasm, Primary   \n",
-              "16963                            Neoplasm, Primary   \n",
-              "17176                            Neoplasm, Primary   \n",
-              "17503                            Neoplasm, Primary   \n",
-              "17580                            Neoplasm, Primary   \n",
-              "18091                            Neoplasm, Primary   \n",
-              "18360                            Neoplasm, Primary   \n",
-              "18434                            Neoplasm, Primary   \n",
-              "18444                            Neoplasm, Primary   \n",
-              "18538                            Neoplasm, Primary   \n",
-              "19462                            Neoplasm, Primary   \n",
-              "19765                            Neoplasm, Primary   \n",
-              "19949                            Neoplasm, Primary   \n",
-              "20411                            Neoplasm, Primary   \n",
-              "31526                            Neoplasm, Primary   \n",
-              "31614                            Neoplasm, Primary   \n",
-              "31811                            Neoplasm, Primary   \n",
-              "31947                                       Normal   \n",
-              "31971                            Neoplasm, Primary   \n",
-              "32186                            Neoplasm, Primary   \n",
-              "32909                            Neoplasm, Primary   \n",
-              "33086                            Neoplasm, Primary   \n",
-              "33133                            Neoplasm, Primary   \n",
-              "33552                            Neoplasm, Primary   \n",
-              "33557                            Neoplasm, Primary   \n",
-              "33939                            Neoplasm, Primary   \n",
-              "34622                            Neoplasm, Primary   \n",
-              "35011                            Neoplasm, Primary   \n",
-              "35084                                       Normal   \n",
-              "\n",
-              "      illuminationType_code_designator_value_str illuminationType_CodeMeaning  \n",
-              "14642                                 DCM:111744     Brightfield illumination  \n",
-              "14648                                 DCM:111744     Brightfield illumination  \n",
-              "14755                                 DCM:111744     Brightfield illumination  \n",
-              "14855                                 DCM:111744     Brightfield illumination  \n",
-              "15005                                 DCM:111744     Brightfield illumination  \n",
-              "15206                                 DCM:111744     Brightfield illumination  \n",
-              "15680                                 DCM:111744     Brightfield illumination  \n",
-              "15874                                 DCM:111744     Brightfield illumination  \n",
-              "15906                                 DCM:111744     Brightfield illumination  \n",
-              "15950                                 DCM:111744     Brightfield illumination  \n",
-              "16175                                 DCM:111744     Brightfield illumination  \n",
-              "16191                                 DCM:111744     Brightfield illumination  \n",
-              "16232                                 DCM:111744     Brightfield illumination  \n",
-              "16335                                 DCM:111744     Brightfield illumination  \n",
-              "16345                                 DCM:111744     Brightfield illumination  \n",
-              "16381                                 DCM:111744     Brightfield illumination  \n",
-              "16406                                 DCM:111744     Brightfield illumination  \n",
-              "16735                                 DCM:111744     Brightfield illumination  \n",
-              "16766                                 DCM:111744     Brightfield illumination  \n",
-              "16945                                 DCM:111744     Brightfield illumination  \n",
-              "16963                                 DCM:111744     Brightfield illumination  \n",
-              "17176                                 DCM:111744     Brightfield illumination  \n",
-              "17503                                 DCM:111744     Brightfield illumination  \n",
-              "17580                                 DCM:111744     Brightfield illumination  \n",
-              "18091                                 DCM:111744     Brightfield illumination  \n",
-              "18360                                 DCM:111744     Brightfield illumination  \n",
-              "18434                                 DCM:111744     Brightfield illumination  \n",
-              "18444                                 DCM:111744     Brightfield illumination  \n",
-              "18538                                 DCM:111744     Brightfield illumination  \n",
-              "19462                                 DCM:111744     Brightfield illumination  \n",
-              "19765                                 DCM:111744     Brightfield illumination  \n",
-              "19949                                 DCM:111744     Brightfield illumination  \n",
-              "20411                                 DCM:111744     Brightfield illumination  \n",
-              "31526                                 DCM:111744     Brightfield illumination  \n",
-              "31614                                 DCM:111744     Brightfield illumination  \n",
-              "31811                                 DCM:111744     Brightfield illumination  \n",
-              "31947                                 DCM:111744     Brightfield illumination  \n",
-              "31971                                 DCM:111744     Brightfield illumination  \n",
-              "32186                                 DCM:111744     Brightfield illumination  \n",
-              "32909                                 DCM:111744     Brightfield illumination  \n",
-              "33086                                 DCM:111744     Brightfield illumination  \n",
-              "33133                                 DCM:111744     Brightfield illumination  \n",
-              "33552                                 DCM:111744     Brightfield illumination  \n",
-              "33557                                 DCM:111744     Brightfield illumination  \n",
-              "33939                                 DCM:111744     Brightfield illumination  \n",
-              "34622                                 DCM:111744     Brightfield illumination  \n",
-              "35011                                 DCM:111744     Brightfield illumination  \n",
-              "35084                                 DCM:111744     Brightfield illumination  "
+              "17038                            Neoplasm, Primary   \n",
+              "17290                            Neoplasm, Primary   \n",
+              "17319                            Neoplasm, Primary   \n",
+              "17383                            Neoplasm, Primary   \n",
+              "17435                            Neoplasm, Primary   \n",
+              "17515                            Neoplasm, Primary   \n",
+              "17660                            Neoplasm, Primary   \n",
+              "17941                            Neoplasm, Primary   \n",
+              "18153                            Neoplasm, Primary   \n",
+              "18330                            Neoplasm, Primary   \n",
+              "18580                            Neoplasm, Primary   \n",
+              "18595                            Neoplasm, Primary   \n",
+              "18631                            Neoplasm, Primary   \n",
+              "18771                            Neoplasm, Primary   \n",
+              "19185                            Neoplasm, Primary   \n",
+              "19190                            Neoplasm, Primary   \n",
+              "20105                            Neoplasm, Primary   \n",
+              "20408                            Neoplasm, Primary   \n",
+              "31350                            Neoplasm, Primary   \n",
+              "31412                            Neoplasm, Primary   \n",
+              "31670                            Neoplasm, Primary   \n",
+              "31703                            Neoplasm, Primary   \n",
+              "31864                            Neoplasm, Primary   \n",
+              "32593                            Neoplasm, Primary   \n",
+              "32729                            Neoplasm, Primary   \n",
+              "32742                                       Normal   \n",
+              "32898                            Neoplasm, Primary   \n",
+              "34027                            Neoplasm, Primary   \n",
+              "34406                            Neoplasm, Primary   \n",
+              "34646                                       Normal   \n",
+              "34855                            Neoplasm, Primary   \n",
+              "34898                            Neoplasm, Primary   \n",
+              "35199                            Neoplasm, Primary   \n",
+              "\n",
+              "      illuminationType_code_designator_value_str illuminationType_CodeMeaning  \\\n",
+              "14816                                 DCM:111744     Brightfield illumination   \n",
+              "15019                                 DCM:111744     Brightfield illumination   \n",
+              "15090                                 DCM:111744     Brightfield illumination   \n",
+              "15096                                 DCM:111744     Brightfield illumination   \n",
+              "15171                                 DCM:111744     Brightfield illumination   \n",
+              "15197                                 DCM:111744     Brightfield illumination   \n",
+              "15302                                 DCM:111744     Brightfield illumination   \n",
+              "15335                                 DCM:111744     Brightfield illumination   \n",
+              "15345                                 DCM:111744     Brightfield illumination   \n",
+              "15691                                 DCM:111744     Brightfield illumination   \n",
+              "15704                                 DCM:111744     Brightfield illumination   \n",
+              "15865                                 DCM:111744     Brightfield illumination   \n",
+              "16123                                 DCM:111744     Brightfield illumination   \n",
+              "16445                                 DCM:111744     Brightfield illumination   \n",
+              "16945                                 DCM:111744     Brightfield illumination   \n",
+              "17038                                 DCM:111744     Brightfield illumination   \n",
+              "17290                                 DCM:111744     Brightfield illumination   \n",
+              "17319                                 DCM:111744     Brightfield illumination   \n",
+              "17383                                 DCM:111744     Brightfield illumination   \n",
+              "17435                                 DCM:111744     Brightfield illumination   \n",
+              "17515                                 DCM:111744     Brightfield illumination   \n",
+              "17660                                 DCM:111744     Brightfield illumination   \n",
+              "17941                                 DCM:111744     Brightfield illumination   \n",
+              "18153                                 DCM:111744     Brightfield illumination   \n",
+              "18330                                 DCM:111744     Brightfield illumination   \n",
+              "18580                                 DCM:111744     Brightfield illumination   \n",
+              "18595                                 DCM:111744     Brightfield illumination   \n",
+              "18631                                 DCM:111744     Brightfield illumination   \n",
+              "18771                                 DCM:111744     Brightfield illumination   \n",
+              "19185                                 DCM:111744     Brightfield illumination   \n",
+              "19190                                 DCM:111744     Brightfield illumination   \n",
+              "20105                                 DCM:111744     Brightfield illumination   \n",
+              "20408                                 DCM:111744     Brightfield illumination   \n",
+              "31350                                 DCM:111744     Brightfield illumination   \n",
+              "31412                                 DCM:111744     Brightfield illumination   \n",
+              "31670                                 DCM:111744     Brightfield illumination   \n",
+              "31703                                 DCM:111744     Brightfield illumination   \n",
+              "31864                                 DCM:111744     Brightfield illumination   \n",
+              "32593                                 DCM:111744     Brightfield illumination   \n",
+              "32729                                 DCM:111744     Brightfield illumination   \n",
+              "32742                                 DCM:111744     Brightfield illumination   \n",
+              "32898                                 DCM:111744     Brightfield illumination   \n",
+              "34027                                 DCM:111744     Brightfield illumination   \n",
+              "34406                                 DCM:111744     Brightfield illumination   \n",
+              "34646                                 DCM:111744     Brightfield illumination   \n",
+              "34855                                 DCM:111744     Brightfield illumination   \n",
+              "34898                                 DCM:111744     Brightfield illumination   \n",
+              "35199                                 DCM:111744     Brightfield illumination   \n",
+              "\n",
+              "      admittingDiagnosis_code_designator_value_str  \\\n",
+              "14816                                         None   \n",
+              "15019                                         None   \n",
+              "15090                                         None   \n",
+              "15096                                         None   \n",
+              "15171                                         None   \n",
+              "15197                                         None   \n",
+              "15302                                         None   \n",
+              "15335                                         None   \n",
+              "15345                                         None   \n",
+              "15691                                         None   \n",
+              "15704                                         None   \n",
+              "15865                                         None   \n",
+              "16123                                         None   \n",
+              "16445                                         None   \n",
+              "16945                                         None   \n",
+              "17038                                         None   \n",
+              "17290                                         None   \n",
+              "17319                                         None   \n",
+              "17383                                         None   \n",
+              "17435                                         None   \n",
+              "17515                                         None   \n",
+              "17660                                         None   \n",
+              "17941                                         None   \n",
+              "18153                                         None   \n",
+              "18330                                         None   \n",
+              "18580                                         None   \n",
+              "18595                                         None   \n",
+              "18631                                         None   \n",
+              "18771                                         None   \n",
+              "19185                                         None   \n",
+              "19190                                         None   \n",
+              "20105                                         None   \n",
+              "20408                                         None   \n",
+              "31350                                         None   \n",
+              "31412                                         None   \n",
+              "31670                                         None   \n",
+              "31703                                         None   \n",
+              "31864                                         None   \n",
+              "32593                                         None   \n",
+              "32729                                         None   \n",
+              "32742                                         None   \n",
+              "32898                                         None   \n",
+              "34027                                         None   \n",
+              "34406                                         None   \n",
+              "34646                                         None   \n",
+              "34855                                         None   \n",
+              "34898                                         None   \n",
+              "35199                                         None   \n",
+              "\n",
+              "      admittingDiagnosis_CodeMeaning  \n",
+              "14816                           None  \n",
+              "15019                           None  \n",
+              "15090                           None  \n",
+              "15096                           None  \n",
+              "15171                           None  \n",
+              "15197                           None  \n",
+              "15302                           None  \n",
+              "15335                           None  \n",
+              "15345                           None  \n",
+              "15691                           None  \n",
+              "15704                           None  \n",
+              "15865                           None  \n",
+              "16123                           None  \n",
+              "16445                           None  \n",
+              "16945                           None  \n",
+              "17038                           None  \n",
+              "17290                           None  \n",
+              "17319                           None  \n",
+              "17383                           None  \n",
+              "17435                           None  \n",
+              "17515                           None  \n",
+              "17660                           None  \n",
+              "17941                           None  \n",
+              "18153                           None  \n",
+              "18330                           None  \n",
+              "18580                           None  \n",
+              "18595                           None  \n",
+              "18631                           None  \n",
+              "18771                           None  \n",
+              "19185                           None  \n",
+              "19190                           None  \n",
+              "20105                           None  \n",
+              "20408                           None  \n",
+              "31350                           None  \n",
+              "31412                           None  \n",
+              "31670                           None  \n",
+              "31703                           None  \n",
+              "31864                           None  \n",
+              "32593                           None  \n",
+              "32729                           None  \n",
+              "32742                           None  \n",
+              "32898                           None  \n",
+              "34027                           None  \n",
+              "34406                           None  \n",
+              "34646                           None  \n",
+              "34855                           None  \n",
+              "34898                           None  \n",
+              "35199                           None  "
             ],
             "text/html": [
               "\n",
-              "  <div id=\"df-99d08784-8529-4343-ba1f-ccb09927dfe3\" class=\"colab-df-container\">\n",
+              "  <div id=\"df-59f863ad-b838-49c9-ac2a-e1982ef3f25f\" class=\"colab-df-container\">\n",
               "    <div>\n",
               "<style scoped>\n",
               "    .dataframe tbody tr th:only-of-type {\n",
@@ -1494,21 +1649,23 @@
               "      <th>primaryAnatomicStructureModifier_CodeMeaning</th>\n",
               "      <th>illuminationType_code_designator_value_str</th>\n",
               "      <th>illuminationType_CodeMeaning</th>\n",
+              "      <th>admittingDiagnosis_code_designator_value_str</th>\n",
+              "      <th>admittingDiagnosis_CodeMeaning</th>\n",
               "    </tr>\n",
               "  </thead>\n",
               "  <tbody>\n",
               "    <tr>\n",
-              "      <th>14642</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1158178852.2126151068.16...</td>\n",
+              "      <th>14816</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1154860174.1213132183.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>10287</td>\n",
-              "      <td>3969</td>\n",
+              "      <td>12626</td>\n",
+              "      <td>4118</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1516,10 +1673,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>14648</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1406625625.143062310.163...</td>\n",
+              "      <th>15019</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1455286618.17992965.1637...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1527,8 +1686,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7014</td>\n",
-              "      <td>4359</td>\n",
+              "      <td>7949</td>\n",
+              "      <td>4621</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1536,10 +1695,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>14755</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1444154427.1890375747.16...</td>\n",
+              "      <th>15090</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1151740798.1819749829.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1547,8 +1708,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7949</td>\n",
-              "      <td>8641</td>\n",
+              "      <td>4676</td>\n",
+              "      <td>4912</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1556,19 +1717,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>14855</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1457224429.1516501177.16...</td>\n",
+              "      <th>15096</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1135751984.1874101819.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>9352</td>\n",
-              "      <td>4472</td>\n",
+              "      <td>5143</td>\n",
+              "      <td>5491</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1576,10 +1739,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15005</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1138367295.641551403.163...</td>\n",
+              "      <th>15171</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1143767850.1263497533.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1587,8 +1752,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>5143</td>\n",
-              "      <td>5523</td>\n",
+              "      <td>4676</td>\n",
+              "      <td>5106</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1596,10 +1761,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15206</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1456907365.1074542557.16...</td>\n",
+              "      <th>15197</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1128237937.1740342290.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1607,8 +1774,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>4208</td>\n",
-              "      <td>8737</td>\n",
+              "      <td>13093</td>\n",
+              "      <td>4248</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1616,10 +1783,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15680</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1444087361.1178802190.16...</td>\n",
+              "      <th>15302</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1463920700.1096033372.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1627,8 +1796,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7014</td>\n",
-              "      <td>4390</td>\n",
+              "      <td>3741</td>\n",
+              "      <td>4490</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1636,19 +1805,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15874</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1417610265.99830249.1637...</td>\n",
+              "      <th>15335</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1154103263.946760015.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>9352</td>\n",
-              "      <td>7152</td>\n",
+              "      <td>10755</td>\n",
+              "      <td>4134</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1656,19 +1827,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15906</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1146638441.2120788688.16...</td>\n",
+              "      <th>15345</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1141705909.1572591725.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>9352</td>\n",
-              "      <td>4666</td>\n",
+              "      <td>5611</td>\n",
+              "      <td>5238</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1676,10 +1849,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>15950</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1161772215.1881002667.16...</td>\n",
+              "      <th>15691</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1145378496.1299693586.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1687,8 +1862,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11223</td>\n",
-              "      <td>6210</td>\n",
+              "      <td>5143</td>\n",
+              "      <td>5393</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1696,10 +1871,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16175</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1144967520.122742132.163...</td>\n",
+              "      <th>15704</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1141305866.208947980.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1707,8 +1884,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>4676</td>\n",
-              "      <td>5103</td>\n",
+              "      <td>12626</td>\n",
+              "      <td>2971</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1716,19 +1893,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16191</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1143764909.1848068707.16...</td>\n",
+              "      <th>15865</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1461636227.453932127.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>4676</td>\n",
-              "      <td>5199</td>\n",
+              "      <td>6546</td>\n",
+              "      <td>10221</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1736,10 +1915,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16232</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1126803882.1132778094.16...</td>\n",
+              "      <th>16123</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1145282546.1908230261.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1747,8 +1928,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>10287</td>\n",
-              "      <td>4387</td>\n",
+              "      <td>11690</td>\n",
+              "      <td>5450</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1756,10 +1937,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16335</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1141705909.1572591725.16...</td>\n",
+              "      <th>16445</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1137743941.2014985547.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1767,8 +1950,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>5611</td>\n",
-              "      <td>5238</td>\n",
+              "      <td>5143</td>\n",
+              "      <td>5491</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1776,10 +1959,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16345</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1143767850.1263497533.16...</td>\n",
+              "      <th>16945</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1146651654.710261411.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1787,8 +1972,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>4676</td>\n",
-              "      <td>5106</td>\n",
+              "      <td>4208</td>\n",
+              "      <td>5260</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1796,19 +1981,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16381</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1154860174.1213132183.16...</td>\n",
+              "      <th>17038</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1147694984.1297962989.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>12626</td>\n",
-              "      <td>4118</td>\n",
+              "      <td>11223</td>\n",
+              "      <td>5668</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1816,19 +2003,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16406</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1135751984.1874101819.16...</td>\n",
+              "      <th>17290</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1126803882.1132778094.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>5143</td>\n",
-              "      <td>5491</td>\n",
+              "      <td>10287</td>\n",
+              "      <td>4387</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1836,10 +2025,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16735</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1151740798.1819749829.16...</td>\n",
+              "      <th>17319</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1161772215.1881002667.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1847,8 +2038,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>4676</td>\n",
-              "      <td>4912</td>\n",
+              "      <td>11223</td>\n",
+              "      <td>6210</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1856,19 +2047,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16766</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1154103263.946760015.163...</td>\n",
+              "      <th>17383</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1444087361.1178802190.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>10755</td>\n",
-              "      <td>4134</td>\n",
+              "      <td>7014</td>\n",
+              "      <td>4390</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1876,10 +2069,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16945</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1455286618.17992965.1637...</td>\n",
+              "      <th>17435</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1143764909.1848068707.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1887,8 +2082,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7949</td>\n",
-              "      <td>4621</td>\n",
+              "      <td>4676</td>\n",
+              "      <td>5199</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1896,19 +2091,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>16963</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1128237937.1740342290.16...</td>\n",
+              "      <th>17515</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1417610265.99830249.1637...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>13093</td>\n",
-              "      <td>4248</td>\n",
+              "      <td>9352</td>\n",
+              "      <td>7152</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1916,10 +2113,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>17176</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1463920700.1096033372.16...</td>\n",
+              "      <th>17660</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1144967520.122742132.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1927,8 +2126,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>3741</td>\n",
-              "      <td>4490</td>\n",
+              "      <td>4676</td>\n",
+              "      <td>5103</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1936,19 +2135,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>17503</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1147694984.1297962989.16...</td>\n",
+              "      <th>17941</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1146638441.2120788688.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11223</td>\n",
-              "      <td>5668</td>\n",
+              "      <td>9352</td>\n",
+              "      <td>4666</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1956,10 +2157,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>17580</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1146651654.710261411.163...</td>\n",
+              "      <th>18153</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1456907365.1074542557.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1968,7 +2171,7 @@
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
               "      <td>4208</td>\n",
-              "      <td>5260</td>\n",
+              "      <td>8737</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1976,10 +2179,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>18091</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1137743941.2014985547.16...</td>\n",
+              "      <th>18330</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1406625625.143062310.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -1987,8 +2192,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>5143</td>\n",
-              "      <td>5491</td>\n",
+              "      <td>7014</td>\n",
+              "      <td>4359</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -1996,10 +2201,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>18360</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1461636227.453932127.163...</td>\n",
+              "      <th>18580</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1457224429.1516501177.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2007,8 +2214,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>6546</td>\n",
-              "      <td>10221</td>\n",
+              "      <td>9352</td>\n",
+              "      <td>4472</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -2016,10 +2223,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>18434</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1145282546.1908230261.16...</td>\n",
+              "      <th>18595</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1444154427.1890375747.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2027,8 +2236,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11690</td>\n",
-              "      <td>5450</td>\n",
+              "      <td>7949</td>\n",
+              "      <td>8641</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -2036,10 +2245,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>18444</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1141305866.208947980.163...</td>\n",
+              "      <th>18631</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1158178852.2126151068.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2047,8 +2258,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>12626</td>\n",
-              "      <td>2971</td>\n",
+              "      <td>10287</td>\n",
+              "      <td>3969</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -2056,19 +2267,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>18538</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1145378496.1299693586.16...</td>\n",
+              "      <th>18771</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1138367295.641551403.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
               "      <td>5143</td>\n",
-              "      <td>5393</td>\n",
+              "      <td>5523</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:12738006</td>\n",
               "      <td>Brain</td>\n",
@@ -2076,19 +2289,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>19462</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3228422447.1812252898.16...</td>\n",
+              "      <th>19185</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3233469531.389116694.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7014</td>\n",
-              "      <td>4485</td>\n",
+              "      <td>11690</td>\n",
+              "      <td>7873</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:71854001</td>\n",
               "      <td>Colon</td>\n",
@@ -2096,9 +2311,11 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>19765</th>\n",
+              "      <th>19190</th>\n",
               "      <td>1.3.6.1.4.1.5962.99.1.3234417202.1975326478.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
@@ -2116,19 +2333,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>19949</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3233469531.389116694.163...</td>\n",
+              "      <th>20105</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3228705008.1410236738.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11690</td>\n",
-              "      <td>7873</td>\n",
+              "      <td>7014</td>\n",
+              "      <td>5156</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:71854001</td>\n",
               "      <td>Colon</td>\n",
@@ -2136,10 +2355,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>20411</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3228705008.1410236738.16...</td>\n",
+              "      <th>20408</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3228422447.1812252898.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2148,7 +2369,7 @@
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
               "      <td>7014</td>\n",
-              "      <td>5156</td>\n",
+              "      <td>4485</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:71854001</td>\n",
               "      <td>Colon</td>\n",
@@ -2156,19 +2377,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>31526</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1867920242.174776288.163...</td>\n",
+              "      <th>31350</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1863242716.389284359.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7014</td>\n",
-              "      <td>6335</td>\n",
+              "      <td>6546</td>\n",
+              "      <td>7127</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2176,19 +2399,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>31614</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1823402096.1162981339.16...</td>\n",
+              "      <th>31412</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1844771749.1538825151.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>6546</td>\n",
-              "      <td>7225</td>\n",
+              "      <td>10287</td>\n",
+              "      <td>6552</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2196,19 +2421,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>31811</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1885027049.1410054045.16...</td>\n",
+              "      <th>31670</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1840857857.447664210.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11223</td>\n",
-              "      <td>10262</td>\n",
+              "      <td>7949</td>\n",
+              "      <td>7843</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2216,10 +2443,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>31947</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1882880394.960879536.163...</td>\n",
+              "      <th>31703</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3417255448.454220613.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2227,19 +2456,21 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>6079</td>\n",
-              "      <td>6902</td>\n",
+              "      <td>8417</td>\n",
+              "      <td>6602</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
-              "      <td>SCT:17621005</td>\n",
-              "      <td>Normal</td>\n",
+              "      <td>SCT:86049000</td>\n",
+              "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>31971</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1872189692.1253427047.16...</td>\n",
+              "      <th>31864</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3437257475.1853292570.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2247,8 +2478,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>11690</td>\n",
-              "      <td>10266</td>\n",
+              "      <td>8417</td>\n",
+              "      <td>6569</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2256,10 +2487,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>32186</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1855349546.1988692817.16...</td>\n",
+              "      <th>32593</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1836880888.275485325.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2267,8 +2500,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>10287</td>\n",
-              "      <td>7222</td>\n",
+              "      <td>10755</td>\n",
+              "      <td>6942</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2276,19 +2509,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>32909</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3417255448.454220613.163...</td>\n",
+              "      <th>32729</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1822830854.365548153.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>8417</td>\n",
-              "      <td>6602</td>\n",
+              "      <td>8885</td>\n",
+              "      <td>8265</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2296,39 +2531,43 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>33086</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1863242716.389284359.163...</td>\n",
+              "      <th>32742</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1846763795.2013686380.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>6546</td>\n",
-              "      <td>7127</td>\n",
+              "      <td>7949</td>\n",
+              "      <td>7489</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
-              "      <td>SCT:86049000</td>\n",
-              "      <td>Neoplasm, Primary</td>\n",
+              "      <td>SCT:17621005</td>\n",
+              "      <td>Normal</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>33133</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1840857857.447664210.163...</td>\n",
+              "      <th>32898</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1864362873.507169178.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7949</td>\n",
-              "      <td>7843</td>\n",
+              "      <td>9352</td>\n",
+              "      <td>8139</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2336,10 +2575,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>33552</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1844771749.1538825151.16...</td>\n",
+              "      <th>34027</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1855349546.1988692817.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2348,7 +2589,7 @@
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
               "      <td>10287</td>\n",
-              "      <td>6552</td>\n",
+              "      <td>7222</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2356,19 +2597,21 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>33557</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.3437257475.1853292570.16...</td>\n",
+              "      <th>34406</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1885027049.1410054045.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>8417</td>\n",
-              "      <td>6569</td>\n",
+              "      <td>11223</td>\n",
+              "      <td>10262</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2376,10 +2619,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>33939</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1864362873.507169178.163...</td>\n",
+              "      <th>34646</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1882880394.960879536.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2387,19 +2632,21 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>9352</td>\n",
-              "      <td>8139</td>\n",
+              "      <td>6079</td>\n",
+              "      <td>6902</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
-              "      <td>SCT:86049000</td>\n",
-              "      <td>Neoplasm, Primary</td>\n",
+              "      <td>SCT:17621005</td>\n",
+              "      <td>Normal</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>34622</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1836880888.275485325.163...</td>\n",
+              "      <th>34855</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1872189692.1253427047.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2407,8 +2654,8 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>10755</td>\n",
-              "      <td>6942</td>\n",
+              "      <td>11690</td>\n",
+              "      <td>10266</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2416,10 +2663,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>35011</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1822830854.365548153.163...</td>\n",
+              "      <th>34898</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1867920242.174776288.163...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2427,8 +2676,8 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>8885</td>\n",
-              "      <td>8265</td>\n",
+              "      <td>7014</td>\n",
+              "      <td>6335</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
@@ -2436,10 +2685,12 @@
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
-              "      <th>35084</th>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1846763795.2013686380.16...</td>\n",
+              "      <th>35199</th>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1823402096.1162981339.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
@@ -2447,15 +2698,17 @@
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.002</td>\n",
-              "      <td>7949</td>\n",
-              "      <td>7489</td>\n",
+              "      <td>6546</td>\n",
+              "      <td>7225</td>\n",
               "      <td>5</td>\n",
               "      <td>SCT:64033007</td>\n",
               "      <td>Kidney</td>\n",
-              "      <td>SCT:17621005</td>\n",
-              "      <td>Normal</td>\n",
+              "      <td>SCT:86049000</td>\n",
+              "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "  </tbody>\n",
               "</table>\n",
@@ -2463,7 +2716,7 @@
               "    <div class=\"colab-df-buttons\">\n",
               "\n",
               "  <div class=\"colab-df-container\">\n",
-              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-99d08784-8529-4343-ba1f-ccb09927dfe3')\"\n",
+              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-59f863ad-b838-49c9-ac2a-e1982ef3f25f')\"\n",
               "            title=\"Convert this dataframe to an interactive table.\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -2515,12 +2768,12 @@
               "\n",
               "    <script>\n",
               "      const buttonEl =\n",
-              "        document.querySelector('#df-99d08784-8529-4343-ba1f-ccb09927dfe3 button.colab-df-convert');\n",
+              "        document.querySelector('#df-59f863ad-b838-49c9-ac2a-e1982ef3f25f button.colab-df-convert');\n",
               "      buttonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "\n",
               "      async function convertToInteractive(key) {\n",
-              "        const element = document.querySelector('#df-99d08784-8529-4343-ba1f-ccb09927dfe3');\n",
+              "        const element = document.querySelector('#df-59f863ad-b838-49c9-ac2a-e1982ef3f25f');\n",
               "        const dataTable =\n",
               "          await google.colab.kernel.invokeFunction('convertToInteractive',\n",
               "                                                    [key], {});\n",
@@ -2540,8 +2793,8 @@
               "  </div>\n",
               "\n",
               "\n",
-              "<div id=\"df-c3c61fc7-ee5e-4ce7-b677-1441a467e84a\">\n",
-              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-c3c61fc7-ee5e-4ce7-b677-1441a467e84a')\"\n",
+              "<div id=\"df-d3f6de5f-5ab9-4d15-ad7e-ac0f69fec227\">\n",
+              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-d3f6de5f-5ab9-4d15-ad7e-ac0f69fec227')\"\n",
               "            title=\"Suggest charts\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -2660,14 +2913,14 @@
               "    }\n",
               "    (() => {\n",
               "      let quickchartButtonEl =\n",
-              "        document.querySelector('#df-c3c61fc7-ee5e-4ce7-b677-1441a467e84a button');\n",
+              "        document.querySelector('#df-d3f6de5f-5ab9-4d15-ad7e-ac0f69fec227 button');\n",
               "      quickchartButtonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "    })();\n",
               "  </script>\n",
               "</div>\n",
               "\n",
-              "  <div id=\"id_cfe8bca7-e409-411c-a9c9-6fcc6fb9a38f\">\n",
+              "  <div id=\"id_95916753-5829-4b93-a74a-57b228e28c8b\">\n",
               "    <style>\n",
               "      .colab-df-generate {\n",
               "        background-color: #E8F0FE;\n",
@@ -2711,7 +2964,7 @@
               "    <script>\n",
               "      (() => {\n",
               "      const buttonEl =\n",
-              "        document.querySelector('#id_cfe8bca7-e409-411c-a9c9-6fcc6fb9a38f button.colab-df-generate');\n",
+              "        document.querySelector('#id_95916753-5829-4b93-a74a-57b228e28c8b button.colab-df-generate');\n",
               "      buttonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "\n",
@@ -2728,11 +2981,11 @@
             "application/vnd.google.colaboratory.intrinsic+json": {
               "type": "dataframe",
               "variable_name": "slides_5x",
-              "summary": "{\n  \"name\": \"slides_5x\",\n  \"rows\": 48,\n  \"fields\": [\n    {\n      \"column\": \"SeriesInstanceUID\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 48,\n        \"samples\": [\n          \"1.3.6.1.4.1.5962.99.1.1141305866.208947980.1637523878410.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1863242716.389284359.1638245815260.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1145282546.1908230261.1637527855090.2.0\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"min_PixelSpacing_2sf\",\n      \"properties\": {\n        \"dtype\": \"number\",\n        \"std\": 0.0,\n        \"min\": 0.002,\n        \"max\": 0.002,\n        \"num_unique_values\": 1,\n        \"samples\": [\n          0.002\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixColumns\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 18,\n        \"samples\": [\n          10287\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixRows\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 47,\n        \"samples\": [\n          5393\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"ObjectiveLensPower\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          5\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 3,\n        \"samples\": [\n          \"SCT:12738006\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 3,\n        \"samples\": [\n          \"Brain\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"SCT:17621005\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"Normal\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          \"DCM:111744\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          \"Brightfield illumination\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    }\n  ]\n}"
+              "repr_error": "0"
             }
           },
           "metadata": {},
-          "execution_count": 8
+          "execution_count": 6
         }
       ]
     },
@@ -2781,7 +3034,7 @@
         "id": "jZal1sO0JDpm",
         "outputId": "4de6cf22-1d04-431b-f8f3-43c098226e8c"
       },
-      "execution_count": 9,
+      "execution_count": null,
       "outputs": [
         {
           "output_type": "display_data",
@@ -2800,7 +3053,7 @@
       "source": [
         "## Combining microscopy metadata with other metadata\n",
         "\n",
-        "`sm_index` table of `idc-index` contains metadata specific to slide microscopy. `idc-index` also contains the main index, which is installed by default, and can be accessed as follows. To learn more about this index, check out [this introductory tutorial](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/getting_started/part2_searching_basics.ipynb)."
+        "`sm_index` table of `idc-index` contains metadata specific to slide microscopy. `idc-index` also contains the main index, which is installed by default, and can be accessed as follows. To learn more about this index, check out [this introductory tutorial](https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/getting_started/part2_searching_basics.ipynb) and this documentation page: https://idc-index.readthedocs.io/en/latest/column_descriptions.html."
       ],
       "metadata": {
         "id": "koLCFPGiCXSG"
@@ -2818,7 +3071,7 @@
         "id": "7yECBg9ODWgi",
         "outputId": "03e37139-02b5-458e-d12e-ccf9b42c5829"
       },
-      "execution_count": 10,
+      "execution_count": null,
       "outputs": [
         {
           "output_type": "stream",
@@ -2865,7 +3118,7 @@
         "id": "Tv7NFyhoGRkB",
         "outputId": "7c445628-2147-4e45-ab82-5a771680176c"
       },
-      "execution_count": 13,
+      "execution_count": null,
       "outputs": [
         {
           "output_type": "execute_result",
@@ -3337,97 +3590,104 @@
       "metadata": {
         "colab": {
           "base_uri": "https://localhost:8080/",
-          "height": 344
+          "height": 226
         },
         "id": "hzSpy1huEMGO",
-        "outputId": "a8be648c-2951-4c09-ba9d-01c9086ccae9"
+        "outputId": "79315e04-e42f-408e-c13c-6ba53aeb123a"
       },
-      "execution_count": null,
+      "execution_count": 8,
       "outputs": [
         {
           "output_type": "execute_result",
           "data": {
             "text/plain": [
               "  collection_id                                  SeriesInstanceUID  \\\n",
-              "0     tcga_lihc  1.3.6.1.4.1.5962.99.1.1963588793.523070908.163...   \n",
-              "1     tcga_stad  1.3.6.1.4.1.5962.99.1.2858915099.29247698.1639...   \n",
-              "2     tcga_thca  1.3.6.1.4.1.5962.99.1.2950318422.196487595.163...   \n",
-              "3      ccdi_mci  1.3.6.1.4.1.5962.99.1.1871665583.510918967.171...   \n",
-              "4      tcga_lgg  1.3.6.1.4.1.5962.99.1.1427138516.1107516783.16...   \n",
+              "0     tcga_blca  1.3.6.1.4.1.5962.99.1.1686961227.2030231607.16...   \n",
+              "1     tcga_lihc  1.3.6.1.4.1.5962.99.1.1947806573.1609278958.16...   \n",
+              "2       tcga_ov  1.3.6.1.4.1.5962.99.1.2029466355.1366491828.16...   \n",
+              "3     tcga_thca  1.3.6.1.4.1.5962.99.1.3010542255.856304460.163...   \n",
+              "4     tcga_skcm  1.3.6.1.4.1.5962.99.1.3320366892.2140220197.16...   \n",
               "\n",
               "  embeddingMedium_CodeMeaning embeddingMedium_code_designator_value_str  \\\n",
               "0    [Tissue freezing medium]                           [SCT:433469005]   \n",
               "1              [Paraffin wax]                           [SCT:311731000]   \n",
               "2              [Paraffin wax]                           [SCT:311731000]   \n",
-              "3              [Paraffin wax]                           [SCT:311731000]   \n",
-              "4    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "3    [Tissue freezing medium]                           [SCT:433469005]   \n",
+              "4              [Paraffin wax]                           [SCT:311731000]   \n",
               "\n",
               "  tissueFixative_CodeMeaning tissueFixative_code_designator_value_str  \\\n",
               "0                         []                                       []   \n",
               "1                 [Formalin]                          [SCT:431510009]   \n",
               "2                 [Formalin]                          [SCT:431510009]   \n",
-              "3                 [Formalin]                          [SCT:431510009]   \n",
-              "4                         []                                       []   \n",
+              "3                         []                                       []   \n",
+              "4                 [Formalin]                          [SCT:431510009]   \n",
               "\n",
               "              staining_usingSubstance_CodeMeaning  \\\n",
-              "0  [hematoxylin stain, water soluble eosin stain]   \n",
+              "0  [water soluble eosin stain, hematoxylin stain]   \n",
               "1  [water soluble eosin stain, hematoxylin stain]   \n",
               "2  [water soluble eosin stain, hematoxylin stain]   \n",
               "3  [hematoxylin stain, water soluble eosin stain]   \n",
-              "4  [water soluble eosin stain, hematoxylin stain]   \n",
+              "4  [hematoxylin stain, water soluble eosin stain]   \n",
               "\n",
               "  staining_usingSubstance_code_designator_value_str  min_PixelSpacing_2sf  \\\n",
-              "0                      [SCT:12710003, SCT:36879007]               0.00025   \n",
+              "0                      [SCT:36879007, SCT:12710003]               0.00025   \n",
               "1                      [SCT:36879007, SCT:12710003]               0.00025   \n",
               "2                      [SCT:36879007, SCT:12710003]               0.00025   \n",
-              "3                      [SCT:12710003, SCT:36879007]               0.00026   \n",
-              "4                      [SCT:36879007, SCT:12710003]               0.00025   \n",
+              "3                      [SCT:12710003, SCT:36879007]               0.00025   \n",
+              "4                      [SCT:12710003, SCT:36879007]               0.00025   \n",
               "\n",
               "   max_TotalPixelMatrixColumns  max_TotalPixelMatrixRows  ObjectiveLensPower  \\\n",
-              "0                       117527                     40825                  40   \n",
-              "1                        96152                     80940                  40   \n",
-              "2                        46711                     46797                  40   \n",
-              "3                       119845                     85479                  40   \n",
-              "4                        83776                     26737                  40   \n",
+              "0                        85655                     26276                  40   \n",
+              "1                       120903                     63020                  40   \n",
+              "2                        31655                     42254                  40   \n",
+              "3                       121935                     28675                  40   \n",
+              "4                        87647                     70983                  40   \n",
               "\n",
               "  primaryAnatomicStructure_code_designator_value_str  \\\n",
-              "0                                       SCT:10200004   \n",
-              "1                                       SCT:69695003   \n",
-              "2                                       SCT:69748006   \n",
-              "3                                       SCT:81745001   \n",
-              "4                                       SCT:12738006   \n",
+              "0                                       SCT:89837001   \n",
+              "1                                       SCT:10200004   \n",
+              "2                                       SCT:15497006   \n",
+              "3                                       SCT:69748006   \n",
+              "4                                       SCT:39937001   \n",
               "\n",
               "  primaryAnatomicStructure_CodeMeaning  \\\n",
-              "0                                Liver   \n",
-              "1                              Stomach   \n",
-              "2                              Thyroid   \n",
-              "3                                  Eye   \n",
-              "4                                Brain   \n",
+              "0                              Bladder   \n",
+              "1                                Liver   \n",
+              "2                                Ovary   \n",
+              "3                              Thyroid   \n",
+              "4                                 Skin   \n",
               "\n",
               "  primaryAnatomicStructureModifier_code_designator_value_str  \\\n",
               "0                                       SCT:86049000           \n",
               "1                                       SCT:86049000           \n",
               "2                                       SCT:86049000           \n",
-              "3                                      SCT:108369006           \n",
+              "3                                       SCT:86049000           \n",
               "4                                       SCT:86049000           \n",
               "\n",
               "  primaryAnatomicStructureModifier_CodeMeaning  \\\n",
               "0                            Neoplasm, Primary   \n",
               "1                            Neoplasm, Primary   \n",
               "2                            Neoplasm, Primary   \n",
-              "3                                        Tumor   \n",
+              "3                            Neoplasm, Primary   \n",
               "4                            Neoplasm, Primary   \n",
               "\n",
-              "  illuminationType_code_designator_value_str illuminationType_CodeMeaning  \n",
-              "0                                 DCM:111744     Brightfield illumination  \n",
-              "1                                 DCM:111744     Brightfield illumination  \n",
-              "2                                 DCM:111744     Brightfield illumination  \n",
-              "3                                 DCM:111744     Brightfield illumination  \n",
-              "4                                 DCM:111744     Brightfield illumination  "
+              "  illuminationType_code_designator_value_str illuminationType_CodeMeaning  \\\n",
+              "0                                 DCM:111744     Brightfield illumination   \n",
+              "1                                 DCM:111744     Brightfield illumination   \n",
+              "2                                 DCM:111744     Brightfield illumination   \n",
+              "3                                 DCM:111744     Brightfield illumination   \n",
+              "4                                 DCM:111744     Brightfield illumination   \n",
+              "\n",
+              "  admittingDiagnosis_code_designator_value_str admittingDiagnosis_CodeMeaning  \n",
+              "0                                         None                           None  \n",
+              "1                                         None                           None  \n",
+              "2                                         None                           None  \n",
+              "3                                         None                           None  \n",
+              "4                                         None                           None  "
             ],
             "text/html": [
               "\n",
-              "  <div id=\"df-3a830950-36bc-4752-b385-570ec738c2a7\" class=\"colab-df-container\">\n",
+              "  <div id=\"df-d1662ae8-22c9-4e74-8026-a5d6c09be83b\" class=\"colab-df-container\">\n",
               "    <div>\n",
               "<style scoped>\n",
               "    .dataframe tbody tr th:only-of-type {\n",
@@ -3464,34 +3724,38 @@
               "      <th>primaryAnatomicStructureModifier_CodeMeaning</th>\n",
               "      <th>illuminationType_code_designator_value_str</th>\n",
               "      <th>illuminationType_CodeMeaning</th>\n",
+              "      <th>admittingDiagnosis_code_designator_value_str</th>\n",
+              "      <th>admittingDiagnosis_CodeMeaning</th>\n",
               "    </tr>\n",
               "  </thead>\n",
               "  <tbody>\n",
               "    <tr>\n",
               "      <th>0</th>\n",
-              "      <td>tcga_lihc</td>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1963588793.523070908.163...</td>\n",
+              "      <td>tcga_blca</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1686961227.2030231607.16...</td>\n",
               "      <td>[Tissue freezing medium]</td>\n",
               "      <td>[SCT:433469005]</td>\n",
               "      <td>[]</td>\n",
               "      <td>[]</td>\n",
-              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
-              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
+              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
+              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00025</td>\n",
-              "      <td>117527</td>\n",
-              "      <td>40825</td>\n",
+              "      <td>85655</td>\n",
+              "      <td>26276</td>\n",
               "      <td>40</td>\n",
-              "      <td>SCT:10200004</td>\n",
-              "      <td>Liver</td>\n",
+              "      <td>SCT:89837001</td>\n",
+              "      <td>Bladder</td>\n",
               "      <td>SCT:86049000</td>\n",
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>1</th>\n",
-              "      <td>tcga_stad</td>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2858915099.29247698.1639...</td>\n",
+              "      <td>tcga_lihc</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.1947806573.1609278958.16...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[Formalin]</td>\n",
@@ -3499,20 +3763,22 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00025</td>\n",
-              "      <td>96152</td>\n",
-              "      <td>80940</td>\n",
+              "      <td>120903</td>\n",
+              "      <td>63020</td>\n",
               "      <td>40</td>\n",
-              "      <td>SCT:69695003</td>\n",
-              "      <td>Stomach</td>\n",
+              "      <td>SCT:10200004</td>\n",
+              "      <td>Liver</td>\n",
               "      <td>SCT:86049000</td>\n",
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>2</th>\n",
-              "      <td>tcga_thca</td>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.2950318422.196487595.163...</td>\n",
+              "      <td>tcga_ov</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.2029466355.1366491828.16...</td>\n",
               "      <td>[Paraffin wax]</td>\n",
               "      <td>[SCT:311731000]</td>\n",
               "      <td>[Formalin]</td>\n",
@@ -3520,57 +3786,63 @@
               "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
               "      <td>[SCT:36879007, SCT:12710003]</td>\n",
               "      <td>0.00025</td>\n",
-              "      <td>46711</td>\n",
-              "      <td>46797</td>\n",
+              "      <td>31655</td>\n",
+              "      <td>42254</td>\n",
               "      <td>40</td>\n",
-              "      <td>SCT:69748006</td>\n",
-              "      <td>Thyroid</td>\n",
+              "      <td>SCT:15497006</td>\n",
+              "      <td>Ovary</td>\n",
               "      <td>SCT:86049000</td>\n",
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>3</th>\n",
-              "      <td>ccdi_mci</td>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1871665583.510918967.171...</td>\n",
-              "      <td>[Paraffin wax]</td>\n",
-              "      <td>[SCT:311731000]</td>\n",
-              "      <td>[Formalin]</td>\n",
-              "      <td>[SCT:431510009]</td>\n",
+              "      <td>tcga_thca</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3010542255.856304460.163...</td>\n",
+              "      <td>[Tissue freezing medium]</td>\n",
+              "      <td>[SCT:433469005]</td>\n",
+              "      <td>[]</td>\n",
+              "      <td>[]</td>\n",
               "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
               "      <td>[SCT:12710003, SCT:36879007]</td>\n",
-              "      <td>0.00026</td>\n",
-              "      <td>119845</td>\n",
-              "      <td>85479</td>\n",
+              "      <td>0.00025</td>\n",
+              "      <td>121935</td>\n",
+              "      <td>28675</td>\n",
               "      <td>40</td>\n",
-              "      <td>SCT:81745001</td>\n",
-              "      <td>Eye</td>\n",
-              "      <td>SCT:108369006</td>\n",
-              "      <td>Tumor</td>\n",
+              "      <td>SCT:69748006</td>\n",
+              "      <td>Thyroid</td>\n",
+              "      <td>SCT:86049000</td>\n",
+              "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "    <tr>\n",
               "      <th>4</th>\n",
-              "      <td>tcga_lgg</td>\n",
-              "      <td>1.3.6.1.4.1.5962.99.1.1427138516.1107516783.16...</td>\n",
-              "      <td>[Tissue freezing medium]</td>\n",
-              "      <td>[SCT:433469005]</td>\n",
-              "      <td>[]</td>\n",
-              "      <td>[]</td>\n",
-              "      <td>[water soluble eosin stain, hematoxylin stain]</td>\n",
-              "      <td>[SCT:36879007, SCT:12710003]</td>\n",
+              "      <td>tcga_skcm</td>\n",
+              "      <td>1.3.6.1.4.1.5962.99.1.3320366892.2140220197.16...</td>\n",
+              "      <td>[Paraffin wax]</td>\n",
+              "      <td>[SCT:311731000]</td>\n",
+              "      <td>[Formalin]</td>\n",
+              "      <td>[SCT:431510009]</td>\n",
+              "      <td>[hematoxylin stain, water soluble eosin stain]</td>\n",
+              "      <td>[SCT:12710003, SCT:36879007]</td>\n",
               "      <td>0.00025</td>\n",
-              "      <td>83776</td>\n",
-              "      <td>26737</td>\n",
+              "      <td>87647</td>\n",
+              "      <td>70983</td>\n",
               "      <td>40</td>\n",
-              "      <td>SCT:12738006</td>\n",
-              "      <td>Brain</td>\n",
+              "      <td>SCT:39937001</td>\n",
+              "      <td>Skin</td>\n",
               "      <td>SCT:86049000</td>\n",
               "      <td>Neoplasm, Primary</td>\n",
               "      <td>DCM:111744</td>\n",
               "      <td>Brightfield illumination</td>\n",
+              "      <td>None</td>\n",
+              "      <td>None</td>\n",
               "    </tr>\n",
               "  </tbody>\n",
               "</table>\n",
@@ -3578,7 +3850,7 @@
               "    <div class=\"colab-df-buttons\">\n",
               "\n",
               "  <div class=\"colab-df-container\">\n",
-              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-3a830950-36bc-4752-b385-570ec738c2a7')\"\n",
+              "    <button class=\"colab-df-convert\" onclick=\"convertToInteractive('df-d1662ae8-22c9-4e74-8026-a5d6c09be83b')\"\n",
               "            title=\"Convert this dataframe to an interactive table.\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -3630,12 +3902,12 @@
               "\n",
               "    <script>\n",
               "      const buttonEl =\n",
-              "        document.querySelector('#df-3a830950-36bc-4752-b385-570ec738c2a7 button.colab-df-convert');\n",
+              "        document.querySelector('#df-d1662ae8-22c9-4e74-8026-a5d6c09be83b button.colab-df-convert');\n",
               "      buttonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "\n",
               "      async function convertToInteractive(key) {\n",
-              "        const element = document.querySelector('#df-3a830950-36bc-4752-b385-570ec738c2a7');\n",
+              "        const element = document.querySelector('#df-d1662ae8-22c9-4e74-8026-a5d6c09be83b');\n",
               "        const dataTable =\n",
               "          await google.colab.kernel.invokeFunction('convertToInteractive',\n",
               "                                                    [key], {});\n",
@@ -3655,8 +3927,8 @@
               "  </div>\n",
               "\n",
               "\n",
-              "<div id=\"df-f69c8623-c77e-44bc-88a5-0103d066645d\">\n",
-              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-f69c8623-c77e-44bc-88a5-0103d066645d')\"\n",
+              "<div id=\"df-b23c9553-4f28-46e2-9334-8fe063267311\">\n",
+              "  <button class=\"colab-df-quickchart\" onclick=\"quickchart('df-b23c9553-4f28-46e2-9334-8fe063267311')\"\n",
               "            title=\"Suggest charts\"\n",
               "            style=\"display:none;\">\n",
               "\n",
@@ -3775,7 +4047,7 @@
               "    }\n",
               "    (() => {\n",
               "      let quickchartButtonEl =\n",
-              "        document.querySelector('#df-f69c8623-c77e-44bc-88a5-0103d066645d button');\n",
+              "        document.querySelector('#df-b23c9553-4f28-46e2-9334-8fe063267311 button');\n",
               "      quickchartButtonEl.style.display =\n",
               "        google.colab.kernel.accessAllowed ? 'block' : 'none';\n",
               "    })();\n",
@@ -3787,11 +4059,12 @@
             ],
             "application/vnd.google.colaboratory.intrinsic+json": {
               "type": "dataframe",
-              "summary": "{\n  \"name\": \"# in the result all of the columns from sm_index and collecton_id column from index\",\n  \"rows\": 5,\n  \"fields\": [\n    {\n      \"column\": \"collection_id\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          \"tcga_stad\",\n          \"tcga_lgg\",\n          \"tcga_thca\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"SeriesInstanceUID\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          \"1.3.6.1.4.1.5962.99.1.2858915099.29247698.1639241487643.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1427138516.1107516783.1637809711060.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.2950318422.196487595.1639332890966.2.0\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"min_PixelSpacing_2sf\",\n      \"properties\": {\n        \"dtype\": \"number\",\n        \"std\": 4.472135954999566e-06,\n        \"min\": 0.00025,\n        \"max\": 0.00026,\n        \"num_unique_values\": 2,\n        \"samples\": [\n          0.00026,\n          0.00025\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixColumns\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          96152,\n          83776\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixRows\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          80940,\n          26737\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"ObjectiveLensPower\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          40\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          \"SCT:69695003\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 5,\n        \"samples\": [\n          \"Stomach\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"SCT:108369006\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"Tumor\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          \"DCM:111744\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 1,\n        \"samples\": [\n          \"Brightfield illumination\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    }\n  ]\n}"
+              "variable_name": "sm_with_main",
+              "summary": "{\n  \"name\": \"sm_with_main\",\n  \"rows\": 66001,\n  \"fields\": [\n    {\n      \"column\": \"collection_id\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 61,\n        \"samples\": [\n          \"tcga_blca\",\n          \"tcga_kirc\",\n          \"htan_wustl\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"SeriesInstanceUID\",\n      \"properties\": {\n        \"dtype\": \"string\",\n        \"num_unique_values\": 66001,\n        \"samples\": [\n          \"1.3.6.1.4.1.5962.99.1.274791798.129843005.1640952331638.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.1142586220.580203888.1637525158764.2.0\",\n          \"1.3.6.1.4.1.5962.99.1.226336330.1425791324.1640903876170.2.0\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"embeddingMedium_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"tissueFixative_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"staining_usingSubstance_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"object\",\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"min_PixelSpacing_2sf\",\n      \"properties\": {\n        \"dtype\": \"number\",\n        \"std\": 0.02942873712017821,\n        \"min\": 0.00011,\n        \"max\": 1.6,\n        \"num_unique_values\": 57,\n        \"samples\": [\n          0.00025,\n          0.00032,\n          0.27\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixColumns\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3276,\n        \"samples\": [\n          30005,\n          90207,\n          130944\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"max_TotalPixelMatrixRows\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 37821,\n        \"samples\": [\n          40411,\n          16278,\n          93931\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"ObjectiveLensPower\",\n      \"properties\": {\n        \"dtype\": \"Int64\",\n        \"num_unique_values\": 3,\n        \"samples\": [\n          40,\n          20,\n          5\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 172,\n        \"samples\": [\n          \"SCT:76784001\",\n          \"SCT:66754008\",\n          \"SCT:50403003\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructure_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 173,\n        \"samples\": [\n          \"Skin of suprapubic region\",\n          \"Cerebral ventricle\",\n          \"Urinary bladder\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"SCT:87784001\",\n          \"SCT:25173007\",\n          \"SCT:86049000\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"primaryAnatomicStructureModifier_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 14,\n        \"samples\": [\n          \"Soft tissue\",\n          \"Recurrent tumor\",\n          \"Neoplasm, Primary\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"DCM:111743\",\n          \"DCM:111744\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"illuminationType_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 2,\n        \"samples\": [\n          \"Epifluorescence illumination\",\n          \"Brightfield illumination\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"admittingDiagnosis_code_designator_value_str\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 103,\n        \"samples\": [\n          \"ICDO3:9510/3\",\n          \"ICDO3:8001/1\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    },\n    {\n      \"column\": \"admittingDiagnosis_CodeMeaning\",\n      \"properties\": {\n        \"dtype\": \"category\",\n        \"num_unique_values\": 103,\n        \"samples\": [\n          \"Retinoblastoma, NOS\",\n          \"Tumor cells, uncertain whether benign or malignant\"\n        ],\n        \"semantic_type\": \"\",\n        \"description\": \"\"\n      }\n    }\n  ]\n}"
             }
           },
           "metadata": {},
-          "execution_count": 30
+          "execution_count": 8
         }
       ]
     },
@@ -3849,6 +4122,124 @@
         }
       ]
     },
+    {
+      "cell_type": "markdown",
+      "source": [
+        "## Learning more about slide provenance\n",
+        "\n",
+        "DICOM data model includes attributes that can be used to describe what anatomic region the tissue in the slide is coming from, what is the morphology of this tissue, and what diagnosis was assigned to the patient at the time the slide was collected.\n",
+        "\n",
+        "DICOM is strict about using defined terms from terminologies to describe the concepts we will be referring to here. This means that instead of free text each of those attributes contains a code tuple. DICOM code tuples consist of:\n",
+        "* `CodingSchemeDesignator`: defines the terminology where code is defined (e.g., \"SCT\" stands for [SNOMED International](http://www.snomed.org/) CT codes, and \"ICDO3\" is for \"International Classification of Diseases for Oncology, 3rd Edition\")\n",
+        "* `CodeValue`: string of text that refers to the specific code within the terminology\n",
+        "* `CodeMeaning`: human-readable meaning of the code\n",
+        "\n",
+        "`sm_index` includes the following coded attributes:\n",
+        "* `primaryAnatomicStructure`: anatomic location from where the imaged specimen was collected\n",
+        "* `primaryAnatomicStructureModifier`: this column may contain additional characteristics of the specimen, such as whether it is a tumor or normal tissue\n",
+        "* `admittingDiagnosis`: diagnosis of the patient, if available\n",
+        "\n",
+        "Each of the above are prefixes of the colums: these attributes exist with suffix `_code_designator_value_str` and `_CodeMeaning`, which indicates whether the column contains CodeSchemeDesignator and CodeValue, or CodeMeaning."
+      ],
+      "metadata": {
+        "id": "7glyFD1KbFRA"
+      }
+    },
+    {
+      "cell_type": "markdown",
+      "source": [
+        "## Example: summarizing sample anatomy and admitting diagnosis for the `mci_ccdi` collection\n",
+        "\n",
+        "Enough theory!\n",
+        "\n",
+        "To illustrate how these attributes can help you navigate IDC data, in the following cell we will make an interactive scatter plot that breaks down the slides available in the [CCDI-MCI collection](https://doi.org/10.5281/zenodo.11099086) of IDC by the anatomic region and admitting diagnosis.\n",
+        "\n",
+        "We will again combine SM-specific metadata and the attributes included in the main index to access `collection_id` attribute for the individual slides."
+      ],
+      "metadata": {
+        "id": "65a7lMYIgNz2"
+      }
+    },
+    {
+      "cell_type": "code",
+      "source": [
+        "import plotly.express as px\n",
+        "\n",
+        "# join idc_client.sm_index and idc_client.index on SeriesInstanceUID, including\n",
+        "# in the result all of the columns from sm_index and collecton_id column from index\n",
+        "sm_with_main = pd.merge(idc_client.index[['collection_id','SeriesInstanceUID']], idc_client.sm_index, on='SeriesInstanceUID')\n",
+        "\n",
+        "counts = sm_with_main[sm_with_main['collection_id']=='ccdi_mci'].groupby(\n",
+        "    ['primaryAnatomicStructure_CodeMeaning',\n",
+        "     'admittingDiagnosis_CodeMeaning']).size().reset_index(name='count')\n",
+        "\n",
+        "fig = px.scatter(counts, x='primaryAnatomicStructure_CodeMeaning', y='admittingDiagnosis_CodeMeaning', size='count',\n",
+        "                 hover_data=['count'], color='count',\n",
+        "                 labels={'primaryAnatomicStructure_CodeMeaning': 'Primary Anatomic Structure',\n",
+        "                         'admittingDiagnosis_CodeMeaning': 'Admitting Diagnosis',\n",
+        "                         'count': 'Count'},\n",
+        "                 title='Scatter Plot of Primary Anatomic Structure vs. Admitting Diagnosis for the CCDI-MCI Collection')\n",
+        "\n",
+        "fig.update_traces(marker=dict(sizemin=5))\n",
+        "fig.update_layout(\n",
+        "    xaxis_title='Primary Anatomic Structure',\n",
+        "    yaxis_title='Admitting Diagnosis',\n",
+        "    xaxis_tickangle=-45\n",
+        ")\n",
+        "\n",
+        "fig.show()"
+      ],
+      "metadata": {
+        "id": "-2vqJMv5g-8f",
+        "outputId": "49d2766e-070f-4f31-a170-4933d53e1531",
+        "colab": {
+          "base_uri": "https://localhost:8080/",
+          "height": 542
+        }
+      },
+      "execution_count": 9,
+      "outputs": [
+        {
+          "output_type": "display_data",
+          "data": {
+            "text/html": [
+              "<html>\n",
+              "<head><meta charset=\"utf-8\" /></head>\n",
+              "<body>\n",
+              "    <div>            <script src=\"https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-AMS-MML_SVG\"></script><script type=\"text/javascript\">if (window.MathJax && window.MathJax.Hub && window.MathJax.Hub.Config) {window.MathJax.Hub.Config({SVG: {font: \"STIX-Web\"}});}</script>                <script type=\"text/javascript\">window.PlotlyConfig = {MathJaxConfig: 'local'};</script>\n",
+              "        <script charset=\"utf-8\" src=\"https://cdn.plot.ly/plotly-2.35.2.min.js\"></script>                <div id=\"03d82e79-4131-481d-8b18-fb59afabaaf3\" class=\"plotly-graph-div\" style=\"height:525px; width:100%;\"></div>            <script type=\"text/javascript\">                                    window.PLOTLYENV=window.PLOTLYENV || {};                                    if (document.getElementById(\"03d82e79-4131-481d-8b18-fb59afabaaf3\")) {                    Plotly.newPlot(                        \"03d82e79-4131-481d-8b18-fb59afabaaf3\",                        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uteri\",\"Cranial and\\u002for facial bone\",\"Cranial and\\u002for facial bone\",\"Endocervix\",\"Endocervix\",\"Ethmoid sinus\",\"Eye\",\"Eye\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Frontal lobe\",\"Gastrointestinal tract\",\"Head and neck\",\"Head and neck\",\"Head and neck\",\"Head and neck\",\"Head and neck\",\"Head and neck lymph node\",\"Head and neck lymph node\",\"Innominate bone and\\u002for sacrum and\\u002for coccyx\",\"Kidney\",\"Larynx\",\"Liver\",\"Liver\",\"Liver\",\"Long bone of lower limb\",\"Long bone of lower limb\",\"Lower limb\",\"Lower limb\",\"Lower lobe of lung\",\"Maxillary sinus\",\"Mediastinum\",\"Mediastinum\",\"Mediastinum\",\"Middle ear\",\"Nasal cavity\",\"Nasopharynx\",\"Nasopharynx\",\"Nasopharynx\",\"Neoplasm of unknown origin\",\"Orbit\",\"Orbit\",\"Orbit\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Ovary\",\"Pancreas\",\"Parietal lobe\",\"Parietal lobe\",\"Parietal lobe\",\"Parietal lobe\",\"Parietal lobe\",\"Pelvis\",\"Pelvis\",\"Pelvis\",\"Pelvis\",\"Pharynx\",\"Pineal gland\",\"Pineal gland\",\"Pituitary gland\",\"Pleura\",\"Retroperitoneum\",\"Rib, sternum and\\u002for clavicle\",\"Scrotum\",\"Skin\",\"Skin of lower limb\",\"Skin of lower limb\",\"Small intestine\",\"Soft tissue\",\"Soft tissue\",\"Soft tissue\",\"Soft tissue\",\"Soft tissue\",\"Soft tissue of abdomen\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of lower extremity\",\"Soft tissue of pelvis\",\"Soft tissue of thorax\",\"Soft tissue of thorax\",\"Soft tissue of trunk\",\"Soft tissue of trunk\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissue of upper extremity\",\"Soft tissues of head and neck\",\"Soft tissues of head and neck\",\"Soft tissues of head and neck\",\"Soft tissues of head and neck\",\"Spinal cord\",\"Spinal cord\",\"Spinal cord\",\"Spinal cord\",\"Spinal cord\",\"Spinal cord\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Temporal lobe\",\"Testis\",\"Testis\",\"Testis\",\"Testis\",\"Thorax\",\"Thorax\",\"Thorax\",\"Thorax\",\"Thyroid\",\"Thyroid\",\"Thyroid\",\"Thyroid\",\"Tongue\",\"Upper limb\",\"Upper limb\",\"Upper limb\",\"Upper limb\",\"Urachus\",\"Urinary bladder\",\"Urinary bladder\",\"Urinary bladder\",\"Urinary bladder\",\"Vagina\"],\"xaxis\":\"x\",\"y\":[\"Abdominal fibromatosis\",\"Desmoplastic small round cell tumor\",\"Embryonal rhabdomyosarcoma, NOS\",\"Gastrointestinal stromal tumor\",\"Neoplasm, uncertain whether benign or malignant\",\"Rhabdomyosarcoma, NOS\",\"Adrenal cortical carcinoma\",\"Pheochromocytoma, NOS\",\"Rhabdoid tumor, NOS\",\"Astrocytoma, NOS\",\"Atypical choroid plexus papilloma\",\"Atypical teratoid\\u002frhabdoid tumor\",\"CNS embryonal tumor, NOS\",\"Choroid plexus carcinoma\",\"Choroid plexus papilloma, NOS\",\"Clear cell meningioma\",\"Craniopharyngioma, NOS\",\"Craniopharyngioma, adamantinomatous\",\"Desmoplastic nodular medulloblastoma\",\"Dysembryoplastic neuroepithelial tumor\",\"Ependymoma, NOS\",\"Fibrillary astrocytoma\",\"Ganglioglioma, NOS\",\"Germinoma\",\"Glioblastoma, NOS\",\"Glioma, malignant\",\"Hemangioblastoma\",\"Medulloblastoma, NOS\",\"Mixed germ cell tumor\",\"Neoplasm, benign\",\"Neoplasm, malignant\",\"Neoplasm, uncertain whether benign or malignant\",\"Neuroma, NOS\",\"Oligoastrocytoma, NOS\",\"Pilocytic astrocytoma\",\"Pineoblastoma\",\"Sarcoma, NOS\",\"Schwannoma, NOS\",\"Tumor cells, malignant\",\"Tumor cells, uncertain whether benign or malignant\",\"Craniopharyngioma, NOS\",\"Ependymoma, NOS\",\"Germinoma\",\"Glioma, malignant\",\"Medulloblastoma, NOS\",\"Pilocytic astrocytoma\",\"Rhabdomyosarcoma, NOS\",\"Myofibroblastic tumor, NOS\",\"Glioma, malignant\",\"Medulloblastoma, NOS\",\"Astrocytoma, NOS\",\"Atypical teratoid\\u002frhabdoid tumor\",\"Desmoplastic nodular medulloblastoma\",\"Ependymoma, NOS\",\"Ganglioglioma, NOS\",\"Glioblastoma, NOS\",\"Glioma, malignant\",\"Hemangioblastoma\",\"Large cell medulloblastoma\",\"Medulloblastoma, NOS\",\"Neoplasm, uncertain whether benign or malignant\",\"Pilocytic astrocytoma\",\"Atypical choroid plexus papilloma\",\"Atypical teratoid\\u002frhabdoid tumor\",\"Choroid plexus carcinoma\",\"Choroid plexus papilloma, NOS\",\"Ependymoma, NOS\",\"Ependymoma, anaplastic\",\"Glioma, malignant\",\"Medulloblastoma, NOS\",\"Neoplasm, malignant\",\"Neoplasm, uncertain whether benign or malignant\",\"Pilocytic astrocytoma\",\"Choroid plexus carcinoma\",\"Glioma, malignant\",\"Embryonal rhabdomyosarcoma, NOS\",\"Myofibroma\",\"Undifferentiated sarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Undifferentiated sarcoma\",\"Rhabdomyosarcoma, NOS\",\"Neoplasm, uncertain whether benign or malignant\",\"Retinoblastoma, NOS\",\"Astrocytoma, NOS\",\"CNS embryonal tumor, NOS\",\"Ependymoma, NOS\",\"Ganglioglioma, NOS\",\"Glioma, malignant\",\"Mesenchymal chondrosarcoma\",\"Neuroblastoma, NOS\",\"Neuroepithelioma, NOS\",\"Oligoastrocytoma, NOS\",\"Pilocytic astrocytoma\",\"Pleomorphic xanthoastrocytoma, NOS\",\"Gastrointestinal stromal tumor\",\"Alveolar rhabdomyosarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Myofibroblastic tumor, NOS\",\"Neoplasm, uncertain whether benign or malignant\",\"Rhabdomyosarcoma, NOS\",\"Malignant lymphoma, non-Hodgkin, NOS\",\"Squamous cell carcinoma, metastatic, NOS\",\"Chordoma, NOS\",\"Ewing sarcoma\",\"Rhabdomyosarcoma, NOS\",\"Desmoplastic small round cell tumor\",\"Embryonal sarcoma\",\"Spindle cell rhabdomyosarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Neoplasm, malignant\",\"Dermatofibrosarcoma protuberans, NOS\",\"Spindle cell sarcoma\",\"Pleuropulmonary blastoma\",\"Spindle cell sarcoma\",\"Aggressive fibromatosis\",\"Malignant peripheral nerve sheath tumor, NOS\",\"Neoplasm, malignant\",\"Rhabdomyosarcoma, NOS\",\"Rhabdomyosarcoma, NOS\",\"Neoplasm, uncertain whether benign or malignant\",\"Rhabdomyosarcoma, NOS\",\"Squamous cell carcinoma, small cell, nonkeratinizing\",\"Neuroblastoma, NOS\",\"Embryonal rhabdomyosarcoma, NOS\",\"Rhabdomyosarcoma, NOS\",\"Spindle cell rhabdomyosarcoma\",\"Adult granulosa cell tumor of ovary\",\"Embryonal rhabdomyosarcoma, NOS\",\"Endometrioid adenocarcinoma, NOS\",\"Neoplasm, malignant\",\"Sclerosing stromal tumor\",\"Sertoli cell tumor, NOS\",\"Sertoli-Leydig cell tumor, mod diff, with heterologous elements\",\"Sertoli-Leydig cell tumor, poorly differentiated\",\"Sex cord-gonadal stromal tumor, NOS\",\"Sex cord-gonadal stromal tumor, incompletely differentiated\",\"Solid pseudopapillary tumor of ovary\",\"CNS embryonal tumor, NOS\",\"Ependymoma, NOS\",\"Glioma, malignant\",\"Neoplasm, malignant\",\"Neoplasm, uncertain whether benign or malignant\",\"Alveolar rhabdomyosarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Epithelioid sarcoma, NOS\",\"Rhabdomyosarcoma, NOS\",\"Embryonal rhabdomyosarcoma, NOS\",\"Germinoma\",\"Pineoblastoma\",\"Pituitary adenoma, NOS\",\"Desmoplastic fibroma\",\"Rhabdomyosarcoma, NOS\",\"Rhabdomyosarcoma, NOS\",\"Embryonal rhabdomyosarcoma, NOS\",\"Malignant melanoma, NOS\",\"Malignant melanoma, NOS\",\"Myxofibrosarcoma\",\"Signet ring cell carcinoma\",\"Aggressive fibromatosis\",\"Alveolar rhabdomyosarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Myxoid liposarcoma\",\"Rhabdomyosarcoma, NOS\",\"Gastrointestinal stromal tumor\",\"Alveolar rhabdomyosarcoma\",\"Clear cell sarcoma, NOS\",\"Myxoid liposarcoma\",\"Pigmented dermatofibrosarcoma protuberans\",\"Rhabdomyosarcoma, NOS\",\"Spindle cell sarcoma\",\"Synovial sarcoma, NOS\",\"Synovial sarcoma, spindle cell\",\"Undifferentiated sarcoma\",\"Aggressive fibromatosis\",\"Sarcoma, NOS\",\"Spindle cell sarcoma\",\"Ewing sarcoma\",\"Undifferentiated sarcoma\",\"Alveolar rhabdomyosarcoma\",\"Desmoplastic fibroma\",\"Desmoplastic small round cell tumor\",\"Embryonal rhabdomyosarcoma, NOS\",\"Ewing sarcoma\",\"Myofibroblastic tumor, NOS\",\"Neoplasm, malignant\",\"Neoplasm, uncertain whether benign or malignant\",\"Neuroblastoma, NOS\",\"Sarcoma, NOS\",\"Aggressive fibromatosis\",\"Alveolar rhabdomyosarcoma\",\"Embryonal rhabdomyosarcoma, NOS\",\"Rhabdomyosarcoma, NOS\",\"Atypical teratoid\\u002frhabdoid tumor\",\"Glioma, 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+              "                            \n",
+              "var gd = document.getElementById('03d82e79-4131-481d-8b18-fb59afabaaf3');\n",
+              "var x = new MutationObserver(function (mutations, observer) {{\n",
+              "        var display = window.getComputedStyle(gd).display;\n",
+              "        if (!display || display === 'none') {{\n",
+              "            console.log([gd, 'removed!']);\n",
+              "            Plotly.purge(gd);\n",
+              "            observer.disconnect();\n",
+              "        }}\n",
+              "}});\n",
+              "\n",
+              "// Listen for the removal of the full notebook cells\n",
+              "var notebookContainer = gd.closest('#notebook-container');\n",
+              "if (notebookContainer) {{\n",
+              "    x.observe(notebookContainer, {childList: true});\n",
+              "}}\n",
+              "\n",
+              "// Listen for the clearing of the current output cell\n",
+              "var outputEl = gd.closest('.output');\n",
+              "if (outputEl) {{\n",
+              "    x.observe(outputEl, {childList: true});\n",
+              "}}\n",
+              "\n",
+              "                        })                };                            </script>        </div>\n",
+              "</body>\n",
+              "</html>"
+            ]
+          },
+          "metadata": {}
+        }
+      ]
+    },
     {
       "cell_type": "markdown",
       "source": [
@@ -3893,6 +4284,54 @@
         }
       ]
     },
+    {
+      "cell_type": "markdown",
+      "source": [
+        "If you prefer to download the selected slides programmatically from python, you can pass the list of `SeriesInstanceUID`s to the `download_from_selection()` function of `IDCClient`. As an example, in the below we will download all slides from the `ccdi_mci` collection that contain tissue where `PrimaryAnatomicStructure_CodeMeaning` is `Abdomen`, and `admittingDiagnosis_CodeMeaning` is `Abdominal fibromatosis`."
+      ],
+      "metadata": {
+        "id": "el_sD238kXx5"
+      }
+    },
+    {
+      "cell_type": "code",
+      "source": [
+        "subset = sm_with_main[(sm_with_main['collection_id']=='ccdi_mci') &\n",
+        "                      (sm_with_main['primaryAnatomicStructure_CodeMeaning']=='Abdomen') &\n",
+        "                      (sm_with_main['admittingDiagnosis_CodeMeaning']=='Abdominal fibromatosis')]\n",
+        "\n",
+        "idc_client.download_from_selection(seriesInstanceUID=list(subset['SeriesInstanceUID'].values),\n",
+        "                                   downloadDir=\".\")"
+      ],
+      "metadata": {
+        "id": "pD87mpTMk8v7",
+        "outputId": "c6d5947d-9a59-485b-db7c-770b8cd19fc8",
+        "colab": {
+          "base_uri": "https://localhost:8080/"
+        }
+      },
+      "execution_count": 15,
+      "outputs": [
+        {
+          "output_type": "stream",
+          "name": "stderr",
+          "text": [
+            "Downloading data: 100%|██████████| 527M/527M [00:08<00:00, 61.5MB/s]\n"
+          ]
+        },
+        {
+          "output_type": "execute_result",
+          "data": {
+            "text/plain": [
+              "array(['1.3.6.1.4.1.5962.99.1.1871434885.1562068995.1719858386053.4.0'],\n",
+              "      dtype=object)"
+            ]
+          },
+          "metadata": {},
+          "execution_count": 15
+        }
+      ]
+    },
     {
       "cell_type": "markdown",
       "source": [
@@ -3909,4 +4348,4 @@
       }
     }
   ]
-}
+}
\ No newline at end of file