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ukb_rare_burden in example_data/run.sh #6

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heiman106 opened this issue Oct 28, 2024 · 0 comments
Open

ukb_rare_burden in example_data/run.sh #6

heiman106 opened this issue Oct 28, 2024 · 0 comments

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@heiman106
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Hi,

I have been working with the example data and successfully executed make_synthetic_datasets.py, common.py, and rvPRS. However, I encountered issues with the ukb_rare_burden script. I understand from the documentation that this script is not included in the example folder, but I have been unable to locate it in any other directories.

Additionally, I attempted to run test_ukb_phenotype_for_association.py. However, I noticed that the parameters differ from those provided in run.sh, and the required phenotype format (pickle) is not compatible with the phenotype format generated by make_synthetic_datasets.py.

Any guidance on locating the ukb_rare_burden script would be greatly appreciated. Thank you!

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