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bestScore > 0 failed #64

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mccafj02 opened this issue Jun 19, 2024 · 0 comments
Open

bestScore > 0 failed #64

mccafj02 opened this issue Jun 19, 2024 · 0 comments

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@mccafj02
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mccafj02 commented Jun 19, 2024

I've encountered this error message on a few samples. Has anyone seen this before? Is there an option to adjust the bestScore Assertion?

dragen-os -r reference/dragen_reference -b inputs/sample1_unmapped.bam --interleaved=1 --num-threads 10
decompHashTableCtxInit...
0.547 seconds
decompHashTableHeader...
0.001 seconds
decompHashTableLiterals...
1.550 seconds
decompHashTableExtIndex...
0.023 seconds
decompHashTableAutoHits...
48.632 seconds
decompHashTableSetFlags...
4.245 seconds
finished decompress
Running fastq workflow on 10 threads. System supports 48 threads.
0 249 0 0 0 0 10000 1 40000 1 1000 0 0 0 6
0 250 0 0 0 0 10000 1 40000 1 1000 0 0 0 5
0 251 0 0 0 0 10000 1 40000 1 1000 0 0 0 4
0 252 0 0 0 0 10000 1 40000 1 1000 0 0 0 3
0 253 0 0 0 0 10000 1 40000 1 1000 0 0 0 2
0 254 0 0 0 0 10000 1 40000 1 1000 0 0 0 1
0 0 121 143 173 148.862 34.0137 1 329 1 329 52333 52799 0 0
Initial paired-end statistics detected for read group all, based on 52333 high quality pairs for FR orientation
Quartiles (25 50 75) = 121 143 173
Mean = 148.862
Standard deviation = 34.0137
Rescue radius = 300
Effective rescue sigmas = 8.81997
Boundaries for mean and standard deviation: low = 17, high = 277
Boundaries for proper pairs: low = 1, high = 329
NOTE: DRAGEN's insert estimates include corrections for clipping (so they are not identical to TLEN)
dragen-os: /usr/gitc/temp/DRAGMAP-1.2.1/src/lib/align/Aligner.cpp:256: int dragenos::align::Aligner::initializeUngappedAlignmentScores(const Read&, bool, size_t, dragenos::align::Aligner::Alignment&): Assertion `bestScore > 0' failed.
Aborted (core dumped)

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