diff --git a/libpyneurosim/Makefile.am b/libpyneurosim/Makefile.am
index 1a32bb0..a115c16 100644
--- a/libpyneurosim/Makefile.am
+++ b/libpyneurosim/Makefile.am
@@ -13,8 +13,8 @@ libpy3neurosim_la_SOURCES = \
 libpy3neurosim_la_HEADERS = \
   pyneurosim.h
 
-libpy3neurosim_la_CXXFLAGS = -I@PYTHON_INCLUDE@ -I$(srcdir)/../libneurosim/conngen
-libpy3neurosim_la_LDFLAGS = $(top_builddir)/libneurosim/libneurosim.la
+libpy3neurosim_la_CXXFLAGS = -I@PYTHON_INCLUDE@ -I$(srcdir)/../neurosim/conngen
+libpy3neurosim_la_LDFLAGS = $(top_builddir)/neurosim/libneurosim.la
 libpy3neurosim_ladir = $(includedir)/neurosim
 else
 lib_LTLIBRARIES += libpy2neurosim.la libpyneurosim.la
@@ -25,8 +25,8 @@ libpy2neurosim_la_SOURCES = \
 libpy2neurosim_la_HEADERS = \
   pyneurosim.h
 
-libpy2neurosim_la_CXXFLAGS = -I@PYTHON_INCLUDE@ -I$(srcdir)/../libneurosim/conngen
-libpy2neurosim_la_LDFLAGS = $(top_builddir)/libneurosim/libneurosim.la
+libpy2neurosim_la_CXXFLAGS = -I@PYTHON_INCLUDE@ -I$(srcdir)/../neurosim/conngen
+libpy2neurosim_la_LDFLAGS = $(top_builddir)/neurosim/libneurosim.la
 libpy2neurosim_ladir = $(includedir)/neurosim
 # generate versionless version for backwards compatibility
 libpyneurosim_la_SOURCES = \